Clone BO11687 Report

Search the DGRC for BO11687

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:116
Well:87
Vector:pDNR-Dual
Associated Gene/TranscriptTre1-RA
Protein status:BO11687.pep: validated full length
Sequenced Size:1210

Clone Sequence Records

BO11687.3prime Sequence

847 bp (806 high quality bases) assembled on 2006-04-19

> BO11687.3prime
ATGGTCTAGAAAGCTTGCTACTGAATATGTTTGGCACATTTGGTTAATAC
TATTCTTCTGCACAGCGTGAAACAGCGGCGTGCTGCGGATGACGCCCGAC
AGCTCCTTGGAGTTCTTGCTTTGGTGATAGTTTCTACTCGGCATCGGCGA
CAACGGTTCGCCCCAGAACTTGAGCAGCGCAAAGATCTTGTAGTAGGCCA
CTCTGTAGTTGCGATTGCTGGCCGCATAGATGATCGGGTTAATGACACTG
GAAGCCCAGGCCATCACGGAGGCGATGATGTGCAGCCAGGGGTACGAGGT
ATTGCGCTCGTCGTCCACCACATTGGCCAGCATTAGCGGCAGGAAGCAGA
CGAGGAAGCACAGAAAGATGGTGACCATCATGACGGTCAGTCGATTGTCT
TCGCGCGCCTTGCGCGTGCATGTGGTGGTCATGTAGGATCCGCCGCCGGA
CGACGAGGAGCCCTTGGCCGCTGCGATCTGGAAGTTATCGTGGTTGCGAA
TCTTCTTTTTCTGGTGCAGCACCGTAATGTAGATGCACGAGTACGAAACG
ATGATCACCAGGCAAGGCAGCAGGAAGCCGATCACGAACAGCGTCTTCTT
GATCGATCGCCCCTCCTTCTTGAGTATTGTGCAGGAGAAGGTGGCCTCGT
CCAGGCCCATCTCGCCCCAGATGCCCAATATGGGCGGCAGCAACAGCAGA
AAGGAGACGGCCCAAACGAACAACAGCTGCAGGGTTATGAACTTAGGCTT
ATATATCTGCGAGTAGCGGCTGTGGCAAGCGATGAGTATATATCTGTTCA
GGGTGATGCCCACCATGCTGAGGAGTGAAACAGCCACATTGCCATAG

BO11687.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:28:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG3171-PA 1179 Tre1-RA 348..1176 847..19 4145 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 17:38:04
Subject Length Description Subject Range Query Range Score Percent Strand
Tre1-RB 1499 CG3171-RB 532..1360 847..19 4145 100 Minus
Tre1-RA 1634 CG3171-RA 667..1495 847..19 4145 100 Minus
Tre1-RC 1655 CG3171-RC 667..1516 847..19 3925 97.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 17:37:56
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5674222..5674710 203..691 2445 100 Plus
X 23542271 X 5673969..5674155 19..205 935 100 Plus
X 23542271 X 5674771..5674876 691..796 530 100 Plus
X 23542271 X 5674940..5674993 794..847 270 100 Plus
Blast to na_te.dros performed 2015-02-03 17:38:00
Subject Length Description Subject Range Query Range Score Percent Strand
invader3 5484 invader3 INVADER3 5484bp 19..69 331..381 129 72.5 Plus
invader3 5484 invader3 INVADER3 5484bp 5205..5255 331..381 129 72.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2786..2831 687..732 121 78.7 Plus

BO11687.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:13:43 Download gff for BO11687.3prime
Subject Subject Range Query Range Percent Splice Strand
Tre1-PA 348..1179 16..847 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:40:14 Download gff for BO11687.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3171-PA 348..1179 16..847 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:36:38 Download gff for BO11687.3prime
Subject Subject Range Query Range Percent Splice Strand
Tre1-RA 667..1505 12..847 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 19:03:14 Download gff for BO11687.3prime
Subject Subject Range Query Range Percent Splice Strand
Tre1-RA 667..1505 12..847 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 19:03:14 Download gff for BO11687.3prime
Subject Subject Range Query Range Percent Splice Strand
X 5673959..5674152 12..202 97 <- Plus
X 5674222..5674709 203..690 100 <- Plus
X 5674771..5674873 691..793 100 <- Plus
X 5674940..5674993 794..847 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:36:38 Download gff for BO11687.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5567992..5568185 12..202 97 <- Plus
arm_X 5568255..5568742 203..690 100 <- Plus
arm_X 5568804..5568906 691..793 100 <- Plus
arm_X 5568973..5569026 794..847 100   Plus

BO11687.5prime Sequence

752 bp (716 high quality bases) assembled on 2006-04-19

> BO11687.5prime
GAAGTTATCAGTCGACATGGATCAGGACATGGGCATGGCAACGGGCTACT
TTCAGGACGCAGACATGCAGATGGATGAACCGGCGGCCGCCACGCAATCG
ATCTACCCGCATTCGGCGACATTATTCGCGGCCATTAGTGCCTGTGTCTT
TGTGACGATCGGCGTTCTTGGCAACCTGATTACCCTGCTGGCGCTGCTCA
AGAGCCCCACGATACGGGAGCATGCCACAACCGCCTTCGTCATTTCGCTA
AGCATCTCCGACCTGCTCTTCTGCTCCTTCAGCCTGCCACTGACCGCAGT
GCGATTCTTCCAGGAGAGCTGGACTTTTGGTACCACATTGTGCAAGATCT
TTCCGGTGATCTTCTATGGCAATGTGGCTGTTTCACTCCTCAGCATGGTG
GGCATCACCCTGAACAGATATATACTCATCGCTTGCCACAGCCGCTACTC
GCAGATATATAAGCCTAAGTTCATAACCCTGCAGCTGTTGTTCGTTTGGG
CCGTCTCCTTTCTGCTGTTGCTGCCGCCCATATTGGGCATCTGGGGCGAG
ATGGGCCTGGACGAGGCCACCTTCTCCTGCACAATACTCAAGAAGGAGGG
GCGATCGATCAAGAAGACGCTGTTCGTGATCGGCTTCCTGCTGCCTTGCC
TGGTGATCATCGTTTCGTACTCGTGCATCTACATTACGGTGCTGCACCAG
AAAAAGAAGATTCGCAACCCATACTTCAGATCCACGCCAGGCTCTCGCGT
CG

BO11687.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:28:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG3171-PA 1179 Tre1-RA 1..703 17..719 3515 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:58:05
Subject Length Description Subject Range Query Range Score Percent Strand
Tre1-RB 1499 CG3171-RB 185..887 17..719 3515 100 Plus
Tre1-RC 1655 CG3171-RC 320..1022 17..719 3515 100 Plus
Tre1-RA 1634 CG3171-RA 320..1022 17..719 3515 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:58:00
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5674511..5674710 719..520 1000 100 Minus
X 23542271 X 5675329..5675483 171..17 775 100 Minus
X 23542271 X 5675112..5675258 316..170 735 100 Minus
X 23542271 X 5674771..5674876 520..415 530 100 Minus
X 23542271 X 5674940..5675042 417..315 515 100 Minus
Blast to na_te.dros performed 2015-02-12 00:58:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2786..2831 524..479 121 78.7 Minus

BO11687.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:13:44 Download gff for BO11687.5prime
Subject Subject Range Query Range Percent Splice Strand
Tre1-PA 1..720 17..732 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:40:15 Download gff for BO11687.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3171-PA 1..720 17..732 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:17:50 Download gff for BO11687.5prime
Subject Subject Range Query Range Percent Splice Strand
Tre1-RA 318..1039 14..732 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:39:27 Download gff for BO11687.5prime
Subject Subject Range Query Range Percent Splice Strand
Tre1-RA 318..1039 14..732 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:39:27 Download gff for BO11687.5prime
Subject Subject Range Query Range Percent Splice Strand
X 5674494..5674709 521..732 98 <- Minus
X 5674771..5674873 418..520 100 <- Minus
X 5674940..5675040 317..417 100 <- Minus
X 5675112..5675257 171..316 100 <- Minus
X 5675330..5675485 14..170 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:17:50 Download gff for BO11687.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5569145..5569290 171..316 100 <- Minus
arm_X 5569363..5569518 14..170 99   Minus
arm_X 5568527..5568742 521..732 98 <- Minus
arm_X 5568804..5568906 418..520 100 <- Minus
arm_X 5568973..5569073 317..417 100 <- Minus

BO11687.complete Sequence

1210 bp assembled on 2006-10-11

GenBank Submission: FJ632158

> BO11687.complete
GAAGTTATCAGTCGACATGGATCAGGACATGGGCATGGCAACGGGCTACT
TTCAGGACGCAGACATGCAGATGGATGAACCGGCGGCCGCCACGCAATCG
ATCTACCCGCATTCGGCGACATTATTCGCGGCCATTAGTGCCTGTGTCTT
TGTGACGATCGGCGTTCTTGGCAACCTGATTACCCTGCTGGCGCTGCTCA
AGAGCCCCACGATACGGGAGCATGCCACAACCGCCTTCGTCATTTCGCTA
AGCATCTCCGACCTGCTCTTCTGCTCCTTCAGCCTGCCACTGACCGCAGT
GCGATTCTTCCAGGAGAGCTGGACTTTTGGTACCACATTGTGCAAGATCT
TTCCGGTGATCTTCTATGGCAATGTGGCTGTTTCACTCCTCAGCATGGTG
GGCATCACCCTGAACAGATATATACTCATCGCTTGCCACAGCCGCTACTC
GCAGATATATAAGCCTAAGTTCATAACCCTGCAGCTGTTGTTCGTTTGGG
CCGTCTCCTTTCTGCTGTTGCTGCCGCCCATATTGGGCATCTGGGGCGAG
ATGGGCCTGGACGAGGCCACCTTCTCCTGCACAATACTCAAGAAGGAGGG
GCGATCGATCAAGAAGACGCTGTTCGTGATCGGCTTCCTGCTGCCTTGCC
TGGTGATCATCGTTTCGTACTCGTGCATCTACATTACGGTGCTGCACCAG
AAAAAGAAGATTCGCAACCACGATAACTTCCAGATCGCAGCGGCCAAGGG
CTCCTCGTCGTCCGGCGGCGGATCCTACATGACCACCACATGCACGCGCA
AGGCGCGCGAAGACAATCGACTGACCGTCATGATGGTCACCATCTTTCTG
TGCTTCCTCGTCTGCTTCCTGCCGCTAATGCTGGCCAATGTGGTGGACGA
CGAGCGCAATACCTCGTACCCCTGGCTGCACATCATCGCCTCCGTGATGG
CCTGGGCTTCCAGTGTCATTAACCCGATCATCTATGCGGCCAGCAATCGC
AACTACAGAGTGGCCTACTACAAGATCTTTGCGCTGCTCAAGTTCTGGGG
CGAACCGTTGTCGCCGATGCCGAGTAGAAACTATCACCAAAGCAAGAACT
CCAAGGAGCTGTCGGGCGTCATCCGCAGCACGCCGCTGTTTCACGCTGTG
CAGAAGAATAGTATTAACCAAATGTGCCAAACATATTCAGTAGCAAGCTT
TCTAGACCAT

BO11687.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:00:22
Subject Length Description Subject Range Query Range Score Percent Strand
Tre1-RB 1179 CG3171-PB 1..1176 17..1192 5880 100 Plus
Tre1-RA 1179 CG3171-PA 1..1176 17..1192 5880 100 Plus
Tre1-RC 1200 CG3171-PC 1..1197 17..1192 5635 98.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:00:24
Subject Length Description Subject Range Query Range Score Percent Strand
Tre1-RB 1499 CG3171-RB 185..1360 17..1192 5880 100 Plus
Tre1-RA 1634 CG3171-RA 320..1495 17..1192 5880 100 Plus
Tre1-RC 1655 CG3171-RC 320..1516 17..1192 5635 98.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:00:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5674222..5674710 1008..520 2445 100 Minus
X 23542271 X 5673969..5674155 1192..1006 935 100 Minus
X 23542271 X 5675329..5675483 171..17 775 100 Minus
X 23542271 X 5675112..5675258 316..170 735 100 Minus
X 23542271 X 5674771..5674876 520..415 530 100 Minus
X 23542271 X 5674940..5675042 417..315 515 100 Minus
Blast to na_te.dros performed 2014-11-26 15:00:21
Subject Length Description Subject Range Query Range Score Percent Strand
invader3 5484 invader3 INVADER3 5484bp 19..69 880..830 129 72.5 Minus
invader3 5484 invader3 INVADER3 5484bp 5205..5255 880..830 129 72.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2786..2831 524..479 121 78.7 Minus

BO11687.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:40:38 Download gff for BO11687.complete
Subject Subject Range Query Range Percent Splice Strand
Tre1-RA 1..1179 17..1195 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:03:28 Download gff for BO11687.complete
Subject Subject Range Query Range Percent Splice Strand
Tre1-RA 316..1503 14..1199 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:46:43 Download gff for BO11687.complete
Subject Subject Range Query Range Percent Splice Strand
Tre1-RA 320..1495 17..1194 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:40:39 Download gff for BO11687.complete
Subject Subject Range Query Range Percent Splice Strand
Tre1-RA 316..1503 14..1199 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:04:29 Download gff for BO11687.complete
Subject Subject Range Query Range Percent Splice Strand
Tre1-RA 320..1495 17..1194 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:04:29 Download gff for BO11687.complete
Subject Subject Range Query Range Percent Splice Strand
X 5675112..5675257 171..316 100 <- Minus
X 5675330..5675483 17..170 100   Minus
X 5673966..5674152 1009..1194 98 <- Minus
X 5674222..5674709 521..1008 100 <- Minus
X 5674771..5674873 418..520 100 <- Minus
X 5674940..5675040 317..417 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:46:43 Download gff for BO11687.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5569145..5569290 171..316 100 <- Minus
arm_X 5569363..5569516 17..170 100   Minus
arm_X 5567999..5568185 1009..1194 98 <- Minus
arm_X 5568255..5568742 521..1008 100 <- Minus
arm_X 5568804..5568906 418..520 100 <- Minus
arm_X 5568973..5569073 317..417 100 <- Minus

BO11687.pep Sequence

Translation from 16 to 1210

> BO11687.pep
MDQDMGMATGYFQDADMQMDEPAAATQSIYPHSATLFAAISACVFVTIGV
LGNLITLLALLKSPTIREHATTAFVISLSISDLLFCSFSLPLTAVRFFQE
SWTFGTTLCKIFPVIFYGNVAVSLLSMVGITLNRYILIACHSRYSQIYKP
KFITLQLLFVWAVSFLLLLPPILGIWGEMGLDEATFSCTILKKEGRSIKK
TLFVIGFLLPCLVIIVSYSCIYITVLHQKKKIRNHDNFQIAAAKGSSSSG
GGSYMTTTCTRKAREDNRLTVMMVTIFLCFLVCFLPLMLANVVDDERNTS
YPWLHIIASVMAWASSVINPIIYAASNRNYRVAYYKIFALLKFWGEPLSP
MPSRNYHQSKNSKELSGVIRSTPLFHAVQKNSINQMCQTYSVASFLDH

BO11687.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:52:01
Subject Length Description Subject Range Query Range Score Percent Strand
Tre1-PB 392 CG3171-PB 1..392 1..392 2025 100 Plus
Tre1-PA 392 CG3171-PA 1..392 1..392 2025 100 Plus
Tre1-PC 399 CG3171-PC 1..399 1..392 2007 98.2 Plus
moody-PD 633 CG4322-PD 22..374 19..334 571 36.3 Plus
moody-PC 633 CG4322-PC 22..374 19..334 571 36.3 Plus