Clone Sequence Records
BO11687.3prime Sequence
847 bp (806 high quality bases) assembled on 2006-04-19
> BO11687.3prime
ATGGTCTAGAAAGCTTGCTACTGAATATGTTTGGCACATTTGGTTAATAC
TATTCTTCTGCACAGCGTGAAACAGCGGCGTGCTGCGGATGACGCCCGAC
AGCTCCTTGGAGTTCTTGCTTTGGTGATAGTTTCTACTCGGCATCGGCGA
CAACGGTTCGCCCCAGAACTTGAGCAGCGCAAAGATCTTGTAGTAGGCCA
CTCTGTAGTTGCGATTGCTGGCCGCATAGATGATCGGGTTAATGACACTG
GAAGCCCAGGCCATCACGGAGGCGATGATGTGCAGCCAGGGGTACGAGGT
ATTGCGCTCGTCGTCCACCACATTGGCCAGCATTAGCGGCAGGAAGCAGA
CGAGGAAGCACAGAAAGATGGTGACCATCATGACGGTCAGTCGATTGTCT
TCGCGCGCCTTGCGCGTGCATGTGGTGGTCATGTAGGATCCGCCGCCGGA
CGACGAGGAGCCCTTGGCCGCTGCGATCTGGAAGTTATCGTGGTTGCGAA
TCTTCTTTTTCTGGTGCAGCACCGTAATGTAGATGCACGAGTACGAAACG
ATGATCACCAGGCAAGGCAGCAGGAAGCCGATCACGAACAGCGTCTTCTT
GATCGATCGCCCCTCCTTCTTGAGTATTGTGCAGGAGAAGGTGGCCTCGT
CCAGGCCCATCTCGCCCCAGATGCCCAATATGGGCGGCAGCAACAGCAGA
AAGGAGACGGCCCAAACGAACAACAGCTGCAGGGTTATGAACTTAGGCTT
ATATATCTGCGAGTAGCGGCTGTGGCAAGCGATGAGTATATATCTGTTCA
GGGTGATGCCCACCATGCTGAGGAGTGAAACAGCCACATTGCCATAG
BO11687.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:28:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3171-PA | 1179 | Tre1-RA | 348..1176 | 847..19 | 4145 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 17:38:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tre1-RB | 1499 | CG3171-RB | 532..1360 | 847..19 | 4145 | 100 | Minus |
Tre1-RA | 1634 | CG3171-RA | 667..1495 | 847..19 | 4145 | 100 | Minus |
Tre1-RC | 1655 | CG3171-RC | 667..1516 | 847..19 | 3925 | 97.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 17:37:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5674222..5674710 | 203..691 | 2445 | 100 | Plus |
X | 23542271 | X | 5673969..5674155 | 19..205 | 935 | 100 | Plus |
X | 23542271 | X | 5674771..5674876 | 691..796 | 530 | 100 | Plus |
X | 23542271 | X | 5674940..5674993 | 794..847 | 270 | 100 | Plus |
Blast to na_te.dros performed 2015-02-03 17:38:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
invader3 | 5484 | invader3 INVADER3 5484bp | 19..69 | 331..381 | 129 | 72.5 | Plus |
invader3 | 5484 | invader3 INVADER3 5484bp | 5205..5255 | 331..381 | 129 | 72.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2786..2831 | 687..732 | 121 | 78.7 | Plus |
BO11687.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:13:43 Download gff for
BO11687.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tre1-PA | 348..1179 | 16..847 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:40:14 Download gff for
BO11687.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3171-PA | 348..1179 | 16..847 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:36:38 Download gff for
BO11687.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tre1-RA | 667..1505 | 12..847 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 19:03:14 Download gff for
BO11687.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tre1-RA | 667..1505 | 12..847 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 19:03:14 Download gff for
BO11687.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5673959..5674152 | 12..202 | 97 | <- | Plus |
X | 5674222..5674709 | 203..690 | 100 | <- | Plus |
X | 5674771..5674873 | 691..793 | 100 | <- | Plus |
X | 5674940..5674993 | 794..847 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:36:38 Download gff for
BO11687.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5567992..5568185 | 12..202 | 97 | <- | Plus |
arm_X | 5568255..5568742 | 203..690 | 100 | <- | Plus |
arm_X | 5568804..5568906 | 691..793 | 100 | <- | Plus |
arm_X | 5568973..5569026 | 794..847 | 100 | | Plus |
BO11687.5prime Sequence
752 bp (716 high quality bases) assembled on 2006-04-19
> BO11687.5prime
GAAGTTATCAGTCGACATGGATCAGGACATGGGCATGGCAACGGGCTACT
TTCAGGACGCAGACATGCAGATGGATGAACCGGCGGCCGCCACGCAATCG
ATCTACCCGCATTCGGCGACATTATTCGCGGCCATTAGTGCCTGTGTCTT
TGTGACGATCGGCGTTCTTGGCAACCTGATTACCCTGCTGGCGCTGCTCA
AGAGCCCCACGATACGGGAGCATGCCACAACCGCCTTCGTCATTTCGCTA
AGCATCTCCGACCTGCTCTTCTGCTCCTTCAGCCTGCCACTGACCGCAGT
GCGATTCTTCCAGGAGAGCTGGACTTTTGGTACCACATTGTGCAAGATCT
TTCCGGTGATCTTCTATGGCAATGTGGCTGTTTCACTCCTCAGCATGGTG
GGCATCACCCTGAACAGATATATACTCATCGCTTGCCACAGCCGCTACTC
GCAGATATATAAGCCTAAGTTCATAACCCTGCAGCTGTTGTTCGTTTGGG
CCGTCTCCTTTCTGCTGTTGCTGCCGCCCATATTGGGCATCTGGGGCGAG
ATGGGCCTGGACGAGGCCACCTTCTCCTGCACAATACTCAAGAAGGAGGG
GCGATCGATCAAGAAGACGCTGTTCGTGATCGGCTTCCTGCTGCCTTGCC
TGGTGATCATCGTTTCGTACTCGTGCATCTACATTACGGTGCTGCACCAG
AAAAAGAAGATTCGCAACCCATACTTCAGATCCACGCCAGGCTCTCGCGT
CG
BO11687.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:28:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3171-PA | 1179 | Tre1-RA | 1..703 | 17..719 | 3515 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:58:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tre1-RB | 1499 | CG3171-RB | 185..887 | 17..719 | 3515 | 100 | Plus |
Tre1-RC | 1655 | CG3171-RC | 320..1022 | 17..719 | 3515 | 100 | Plus |
Tre1-RA | 1634 | CG3171-RA | 320..1022 | 17..719 | 3515 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:58:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5674511..5674710 | 719..520 | 1000 | 100 | Minus |
X | 23542271 | X | 5675329..5675483 | 171..17 | 775 | 100 | Minus |
X | 23542271 | X | 5675112..5675258 | 316..170 | 735 | 100 | Minus |
X | 23542271 | X | 5674771..5674876 | 520..415 | 530 | 100 | Minus |
X | 23542271 | X | 5674940..5675042 | 417..315 | 515 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 00:58:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2786..2831 | 524..479 | 121 | 78.7 | Minus |
BO11687.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:13:44 Download gff for
BO11687.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tre1-PA | 1..720 | 17..732 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:40:15 Download gff for
BO11687.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3171-PA | 1..720 | 17..732 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:17:50 Download gff for
BO11687.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tre1-RA | 318..1039 | 14..732 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:39:27 Download gff for
BO11687.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tre1-RA | 318..1039 | 14..732 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:39:27 Download gff for
BO11687.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5674494..5674709 | 521..732 | 98 | <- | Minus |
X | 5674771..5674873 | 418..520 | 100 | <- | Minus |
X | 5674940..5675040 | 317..417 | 100 | <- | Minus |
X | 5675112..5675257 | 171..316 | 100 | <- | Minus |
X | 5675330..5675485 | 14..170 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:17:50 Download gff for
BO11687.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5569145..5569290 | 171..316 | 100 | <- | Minus |
arm_X | 5569363..5569518 | 14..170 | 99 | | Minus |
arm_X | 5568527..5568742 | 521..732 | 98 | <- | Minus |
arm_X | 5568804..5568906 | 418..520 | 100 | <- | Minus |
arm_X | 5568973..5569073 | 317..417 | 100 | <- | Minus |
BO11687.complete Sequence
1210 bp assembled on 2006-10-11
GenBank Submission: FJ632158
> BO11687.complete
GAAGTTATCAGTCGACATGGATCAGGACATGGGCATGGCAACGGGCTACT
TTCAGGACGCAGACATGCAGATGGATGAACCGGCGGCCGCCACGCAATCG
ATCTACCCGCATTCGGCGACATTATTCGCGGCCATTAGTGCCTGTGTCTT
TGTGACGATCGGCGTTCTTGGCAACCTGATTACCCTGCTGGCGCTGCTCA
AGAGCCCCACGATACGGGAGCATGCCACAACCGCCTTCGTCATTTCGCTA
AGCATCTCCGACCTGCTCTTCTGCTCCTTCAGCCTGCCACTGACCGCAGT
GCGATTCTTCCAGGAGAGCTGGACTTTTGGTACCACATTGTGCAAGATCT
TTCCGGTGATCTTCTATGGCAATGTGGCTGTTTCACTCCTCAGCATGGTG
GGCATCACCCTGAACAGATATATACTCATCGCTTGCCACAGCCGCTACTC
GCAGATATATAAGCCTAAGTTCATAACCCTGCAGCTGTTGTTCGTTTGGG
CCGTCTCCTTTCTGCTGTTGCTGCCGCCCATATTGGGCATCTGGGGCGAG
ATGGGCCTGGACGAGGCCACCTTCTCCTGCACAATACTCAAGAAGGAGGG
GCGATCGATCAAGAAGACGCTGTTCGTGATCGGCTTCCTGCTGCCTTGCC
TGGTGATCATCGTTTCGTACTCGTGCATCTACATTACGGTGCTGCACCAG
AAAAAGAAGATTCGCAACCACGATAACTTCCAGATCGCAGCGGCCAAGGG
CTCCTCGTCGTCCGGCGGCGGATCCTACATGACCACCACATGCACGCGCA
AGGCGCGCGAAGACAATCGACTGACCGTCATGATGGTCACCATCTTTCTG
TGCTTCCTCGTCTGCTTCCTGCCGCTAATGCTGGCCAATGTGGTGGACGA
CGAGCGCAATACCTCGTACCCCTGGCTGCACATCATCGCCTCCGTGATGG
CCTGGGCTTCCAGTGTCATTAACCCGATCATCTATGCGGCCAGCAATCGC
AACTACAGAGTGGCCTACTACAAGATCTTTGCGCTGCTCAAGTTCTGGGG
CGAACCGTTGTCGCCGATGCCGAGTAGAAACTATCACCAAAGCAAGAACT
CCAAGGAGCTGTCGGGCGTCATCCGCAGCACGCCGCTGTTTCACGCTGTG
CAGAAGAATAGTATTAACCAAATGTGCCAAACATATTCAGTAGCAAGCTT
TCTAGACCAT
BO11687.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:00:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tre1-RB | 1179 | CG3171-PB | 1..1176 | 17..1192 | 5880 | 100 | Plus |
Tre1-RA | 1179 | CG3171-PA | 1..1176 | 17..1192 | 5880 | 100 | Plus |
Tre1-RC | 1200 | CG3171-PC | 1..1197 | 17..1192 | 5635 | 98.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:00:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tre1-RB | 1499 | CG3171-RB | 185..1360 | 17..1192 | 5880 | 100 | Plus |
Tre1-RA | 1634 | CG3171-RA | 320..1495 | 17..1192 | 5880 | 100 | Plus |
Tre1-RC | 1655 | CG3171-RC | 320..1516 | 17..1192 | 5635 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:00:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5674222..5674710 | 1008..520 | 2445 | 100 | Minus |
X | 23542271 | X | 5673969..5674155 | 1192..1006 | 935 | 100 | Minus |
X | 23542271 | X | 5675329..5675483 | 171..17 | 775 | 100 | Minus |
X | 23542271 | X | 5675112..5675258 | 316..170 | 735 | 100 | Minus |
X | 23542271 | X | 5674771..5674876 | 520..415 | 530 | 100 | Minus |
X | 23542271 | X | 5674940..5675042 | 417..315 | 515 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 15:00:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
invader3 | 5484 | invader3 INVADER3 5484bp | 19..69 | 880..830 | 129 | 72.5 | Minus |
invader3 | 5484 | invader3 INVADER3 5484bp | 5205..5255 | 880..830 | 129 | 72.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2786..2831 | 524..479 | 121 | 78.7 | Minus |
BO11687.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:40:38 Download gff for
BO11687.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tre1-RA | 1..1179 | 17..1195 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:03:28 Download gff for
BO11687.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tre1-RA | 316..1503 | 14..1199 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:46:43 Download gff for
BO11687.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tre1-RA | 320..1495 | 17..1194 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:40:39 Download gff for
BO11687.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tre1-RA | 316..1503 | 14..1199 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:04:29 Download gff for
BO11687.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tre1-RA | 320..1495 | 17..1194 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:04:29 Download gff for
BO11687.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5675112..5675257 | 171..316 | 100 | <- | Minus |
X | 5675330..5675483 | 17..170 | 100 | | Minus |
X | 5673966..5674152 | 1009..1194 | 98 | <- | Minus |
X | 5674222..5674709 | 521..1008 | 100 | <- | Minus |
X | 5674771..5674873 | 418..520 | 100 | <- | Minus |
X | 5674940..5675040 | 317..417 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:46:43 Download gff for
BO11687.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5569145..5569290 | 171..316 | 100 | <- | Minus |
arm_X | 5569363..5569516 | 17..170 | 100 | | Minus |
arm_X | 5567999..5568185 | 1009..1194 | 98 | <- | Minus |
arm_X | 5568255..5568742 | 521..1008 | 100 | <- | Minus |
arm_X | 5568804..5568906 | 418..520 | 100 | <- | Minus |
arm_X | 5568973..5569073 | 317..417 | 100 | <- | Minus |
BO11687.pep Sequence
Translation from 16 to 1210
> BO11687.pep
MDQDMGMATGYFQDADMQMDEPAAATQSIYPHSATLFAAISACVFVTIGV
LGNLITLLALLKSPTIREHATTAFVISLSISDLLFCSFSLPLTAVRFFQE
SWTFGTTLCKIFPVIFYGNVAVSLLSMVGITLNRYILIACHSRYSQIYKP
KFITLQLLFVWAVSFLLLLPPILGIWGEMGLDEATFSCTILKKEGRSIKK
TLFVIGFLLPCLVIIVSYSCIYITVLHQKKKIRNHDNFQIAAAKGSSSSG
GGSYMTTTCTRKAREDNRLTVMMVTIFLCFLVCFLPLMLANVVDDERNTS
YPWLHIIASVMAWASSVINPIIYAASNRNYRVAYYKIFALLKFWGEPLSP
MPSRNYHQSKNSKELSGVIRSTPLFHAVQKNSINQMCQTYSVASFLDH
BO11687.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:52:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tre1-PB | 392 | CG3171-PB | 1..392 | 1..392 | 2025 | 100 | Plus |
Tre1-PA | 392 | CG3171-PA | 1..392 | 1..392 | 2025 | 100 | Plus |
Tre1-PC | 399 | CG3171-PC | 1..399 | 1..392 | 2007 | 98.2 | Plus |
moody-PD | 633 | CG4322-PD | 22..374 | 19..334 | 571 | 36.3 | Plus |
moody-PC | 633 | CG4322-PC | 22..374 | 19..334 | 571 | 36.3 | Plus |