Clone BO11688 Report

Search the DGRC for BO11688

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:116
Well:88
Vector:pDNR-Dual
Associated Gene/Transcriptalpha-Est4-RA
Protein status:BO11688.pep: validated full length
Sequenced Size:1657

Clone Sequence Records

BO11688.3prime Sequence

796 bp (793 high quality bases) assembled on 2006-04-19

> BO11688.3prime
ATGGTCTAGAAAGCTTGCGAATAAGGGTACTCCAGCCATTTCGTATAGGC
GATCGAAAAACTTCAACTTCGGCATTTCTGGCTGCGGAATAAACTTCAAT
TCCTCGCTTATATTTAGGACCATCCGTTTTCCGAATCGAGTTACGGGCTT
CCAATCCACCAGAGATTTAGTGAGTGGAGCATTTGGGTCCGAGGTGGCGG
CGAATTGGACAAACATGGCCACCAATCGGCGAATGGCTGTGAACTCTGGT
CGAGACTTGTCCAATTTGAAGGTAGCTGGCAGCTTGAAAATGTATCCCAG
TTCATCCACGTGTCCAACTCCCCGCTGTTCCTTGCCCATAAAGCGAATTC
GGTAGAAATTAAAATCCGGCGAGTCGAAGTCAAATCGATAAAGGTAAGTG
GGCGCCTGGCCGTAAGTCAGTCTGGATTGGATTAGTCGGTCCATAGCGTG
CACAAAGCCGTGAGTGAAGAGCTCCACCAATCCGTTTGTGTGATCTACAG
TCAACTCATGGCCGTGCGCCTCGCAGAAGTGATGGATCAATGCTTGACCC
AGTTGGCGCCGCTGTCCAGGATCACAGCGATTTCTCAGGGTCCAAGGCAG
CACCCGCTCCGGGTTGCATTGAAATTCCTTTAGCCACGAGGGGTTCATTT
TTACGAAGCTAAAAATCGACATCCCCTCGCCACTGTTGGCGCCTAAGATG
ATGGGAATACGATTGCTCCACGTGGTTCGCTGGAGGTCAATAGGCTCGGC
AAGGAGCACTGCATTGGGCGTGGAGTAGCTTTCAATGCTGGGCTTG

BO11688.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:28:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG1082-PA 1626 alpha-Est4-RA 846..1623 796..19 3890 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:26:28
Subject Length Description Subject Range Query Range Score Percent Strand
alpha-Est4-RA 1749 CG1082-RA 904..1681 796..19 3890 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:26:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7536755..7537532 19..796 3890 100 Plus
3R 32079331 3R 7527941..7528034 281..188 215 81.9 Minus
Blast to na_te.dros performed on 2015-02-11 12:26:27 has no hits.

BO11688.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:13:45 Download gff for BO11688.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1082-PA 846..1626 15..796 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:40:17 Download gff for BO11688.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1082-PA 846..1626 15..796 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 23:28:32 Download gff for BO11688.3prime
Subject Subject Range Query Range Percent Splice Strand
alpha-Est4-RA 904..1684 15..796 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:52:26 Download gff for BO11688.3prime
Subject Subject Range Query Range Percent Splice Strand
alpha-Est4-RA 904..1684 15..796 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:52:26 Download gff for BO11688.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 7536751..7537532 15..796 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 23:28:32 Download gff for BO11688.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3362473..3363254 15..796 99   Plus

BO11688.5prime Sequence

741 bp (667 high quality bases) assembled on 2006-04-19

> BO11688.5prime
GAAGTTATCAGTCGACATGTCGGACGACTACAACGAAGATGCCCCCGTGG
TGCAGACAACACATGGAAAAGTGAGGGGAATCCTGCTTAAGTCCCTATAT
GACGAACAGTTTTACGCTTTTGATGGCATCCCCTATGCGGTTCCTCCGCT
GGGAACCCTGCGCTTCAAGGAGCCCCATGACCTTAAACCATGGCACGGGA
TTCGCGATTGCTCCAAGCCGCTCAGCAAGTGCCTGCAAGTGAGCACATTA
ACCAAGGAGGTGGAAGGCTCCGAGGATTGCCTTTACCTGAACATATCAGT
AAAAACTCTAAACGGTGATCCCATGCCTGTGATGGTCTACATCCATGGAG
GCGCTTTTAAGGGCGGAGATTCTTCGAGACGCGCCTGGGGTCCCGACTAT
TTTATGAAGGAAAACGTTGTGTACATAAGCATTGGTCATCGACTGGGACC
CTTAGGTTTCCTCAGTCTCAATGATCCCGATCTTGAAGTTCCTGGCAATG
CTGGATTGAAAGACGTTATCTTGGCCCTCCGTTGGATCAGGGCAAACGCG
GCCAACTTCAATGGTGACCCCGAGAGAATAACCATCTTTGGTCACAGCTC
TGGCAGCATGACCGTTCAACTGTTGCTGGCAAGTCCACAATCAGAAGGAC
TCTTCCATAGGGCCATACTATTGGCAGGATTCTCAATGGAGCTGAATCGC
CTGCCCCAAATGGAGTACCGTCTGGCCAAGCATTTGGGCTA

BO11688.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:28:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG1082-PA 1626 alpha-Est4-RA 1..725 17..741 3625 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:16:31
Subject Length Description Subject Range Query Range Score Percent Strand
alpha-Est4-RA 1749 CG1082-RA 59..783 17..741 3625 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:16:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7537653..7537940 741..454 1440 100 Minus
3R 32079331 3R 7538205..7538485 311..31 1390 99.6 Minus
3R 32079331 3R 7537999..7538148 457..308 750 100 Minus
3R 32079331 3R 7526464..7526735 42..306 290 74.6 Plus
3R 32079331 3R 7527121..7527334 472..685 275 75.2 Plus
3R 32079331 3R 7526849..7526966 332..449 215 78.8 Plus
Blast to na_te.dros performed 2015-02-11 15:16:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\BuT4 1447 Dbuz\BuT4 BUT4 1447bp 564..614 391..436 109 72.5 Plus

BO11688.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:13:46 Download gff for BO11688.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1082-PA 1..724 17..740 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:40:18 Download gff for BO11688.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1082-PA 1..724 17..740 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:19:25 Download gff for BO11688.5prime
Subject Subject Range Query Range Percent Splice Strand
alpha-Est4-RA 53..782 8..740 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:08:31 Download gff for BO11688.5prime
Subject Subject Range Query Range Percent Splice Strand
alpha-Est4-RA 53..782 8..740 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:08:31 Download gff for BO11688.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 7538209..7538485 31..307 100 <- Minus
3R 7537654..7537938 456..740 100 <- Minus
3R 7538001..7538148 308..455 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:19:25 Download gff for BO11688.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3363723..3363870 308..455 100 <- Minus
arm_3R 3363376..3363660 456..740 100 <- Minus
arm_3R 3363931..3364207 31..307 100 <- Minus

BO11688.complete Sequence

1657 bp assembled on 2007-10-31

GenBank Submission: FJ632159

> BO11688.complete
GAAGTTATCAGTCGACATGTCGGACGACTACAACGAAGATGCCCCCGTGG
TGCAGACAACACATGGAAAAGTGAGGGGAATCCTGCTTAAGTCCCTATAT
GACGAACAGTTTTACGCTTTTGATGGCATCCCCTATGCGGTTCCTCCGCT
GGGAACCCTGCGCTTCAAGGAGCCCCATGACCTTAAACCATGGCACGGGA
TTCGCGATTGCTCCAAGCCGCTCAGCAAGTGCCTGCAAGTGAGCACATTA
ACCAAGGAGGTGGAAGGCTCCGAGGATTGCCTTTACCTGAACATATCAGT
AAAAACTCTAAACGGTGATCCCATGCCTGTGATGGTCTACATCCATGGAG
GCGCTTTTAAGGGCGGAGATTCTTCGAGACGCGCCTGGGGTCCCGACTAT
TTTATGAAGGAAAACGTTGTGTACATAAGCATTGGTCATCGACTGGGACC
CTTAGGTTTCCTCAGTCTCAATGATCCCGATCTTGAAGTTCCTGGCAATG
CTGGATTGAAAGACGTTATCTTGGCCCTCCGTTGGATCAGGGCAAACGCG
GCCAACTTCAATGGTGACCCCGAGAGAATAACCATCTTTGGTCACAGCTC
TGGCAGCATGACCGTTCAACTGTTGCTGGCAAGTCCACAATCAGAAGGAC
TCTTCCATAGGGCCATACTATTGGCAGGATTCTCAATGGAGCTGAATCGC
CTGCCCCAAATGGAGTACCGTCTGGCCAAGCATTTGGGCTACGAAGGAGA
TAATGTCGATAGCCAGGTCTTGGAGTTCCTCTTGAAGGCAGATCCGGCTC
TAATCGTCTCTGCGGACTTTTTCACTCCACTGGAGAAGAGACAGGGTCAC
AATATGCCCTTCAAGCCCAGCATTGAAAGCTACTCCACGCCCAATGCAGT
GCTCCTTGCCGAGCCTATTGACCTCCAGCGAACCACGTGGAGCAATCGTA
TTCCCATCATCTTAGGCGCCAACAGTGGCGAGGGGATGTCGATTTTTAGC
TTCGTAAAAATGAACCCCTCGTGGCTAAAGGAATTTCAATGCAACCCGGA
GCGGGTGCTGCCTTGGACCCTGAGAAATCGCTGTGATCCTGGACAGCGGC
GCCAACTGGGTCAAGCATTGATCCATCACTTCTGCGAGGCGCACGGCCAT
GAGTTGACTGTAGATCACACAAACGGATTGGTGGAGCTCTTCACTCACGG
CTTTGTGCACGCTATGGACCGACTAATCCAATCCAGACTGACTTACGGCC
AGGCGCCCACTTACCTTTATCGATTTGACTTCGACTCGCCGGATTTTAAT
TTCTACCGAATTCGCTTTATGGGCAAGGAACAGCGGGGAGTTGGACACGT
GGATGAACTGGGATACATTTTCAAGCTGCCAGCTACCTTCAAATTGGACA
AGTCTCGACCAGAGTTCACAGCCATTCGCCGATTGGTGGCCATGTTTGTC
CAATTCGCCGCCACCTCGGACCCAAATGCTCCACTCACTAAATCTCTGGT
GGATTGGAAGCCCGTAACTCGATTCGGAAAACGGATGGTCCTAAATATAA
GCGAGGAATTGAAGTTTATTCCGCAGCCAGAAATGCCGAAGTTGAAGTTT
TTCGATCGCCTATACGAAATGGCTGGAGTACCCTTATTCGCAAGCTTTCT
AGACCAT

BO11688.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:51:24
Subject Length Description Subject Range Query Range Score Percent Strand
alpha-Est4-RA 1626 CG1082-PA 1..1623 17..1639 8100 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:51:25
Subject Length Description Subject Range Query Range Score Percent Strand
alpha-Est4-RA 1749 CG1082-RA 59..1681 17..1639 8100 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:51:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7536755..7537940 1639..454 5915 99.9 Minus
3R 32079331 3R 7538205..7538485 311..31 1390 99.6 Minus
3R 32079331 3R 7537999..7538148 457..308 750 100 Minus
3R 32079331 3R 7527121..7527470 472..838 330 73.3 Plus
3R 32079331 3R 7526464..7526735 42..306 290 74.6 Plus
3R 32079331 3R 7526849..7526966 332..449 215 78.8 Plus
3R 32079331 3R 7527941..7528034 1377..1470 215 81.9 Plus
Blast to na_te.dros performed on 2014-11-26 16:51:23 has no hits.

BO11688.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:58:55 Download gff for BO11688.complete
Subject Subject Range Query Range Percent Splice Strand
alpha-Est4-RA 1..1626 17..1643 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:10:36 Download gff for BO11688.complete
Subject Subject Range Query Range Percent Splice Strand
alpha-Est4-RA 29..1660 8..1643 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:11:30 Download gff for BO11688.complete
Subject Subject Range Query Range Percent Splice Strand
alpha-Est4-RA 59..1681 17..1641 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:39:49 Download gff for BO11688.complete
Subject Subject Range Query Range Percent Splice Strand
alpha-Est4-RA 35..1657 17..1641 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:29:01 Download gff for BO11688.complete
Subject Subject Range Query Range Percent Splice Strand
alpha-Est4-RA 59..1681 17..1641 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:29:01 Download gff for BO11688.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7538209..7538485 31..307 100 <- Minus
3R 7536753..7537938 456..1641 99 <- Minus
3R 7538001..7538148 308..455 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:11:30 Download gff for BO11688.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3362475..3363660 456..1641 99 <- Minus
arm_3R 3363723..3363870 308..455 100 <- Minus
arm_3R 3363931..3364207 31..307 100 <- Minus

BO11688.pep Sequence

Translation from 16 to 1657

> BO11688.pep
MSDDYNEDAPVVQTTHGKVRGILLKSLYDEQFYAFDGIPYAVPPLGTLRF
KEPHDLKPWHGIRDCSKPLSKCLQVSTLTKEVEGSEDCLYLNISVKTLNG
DPMPVMVYIHGGAFKGGDSSRRAWGPDYFMKENVVYISIGHRLGPLGFLS
LNDPDLEVPGNAGLKDVILALRWIRANAANFNGDPERITIFGHSSGSMTV
QLLLASPQSEGLFHRAILLAGFSMELNRLPQMEYRLAKHLGYEGDNVDSQ
VLEFLLKADPALIVSADFFTPLEKRQGHNMPFKPSIESYSTPNAVLLAEP
IDLQRTTWSNRIPIILGANSGEGMSIFSFVKMNPSWLKEFQCNPERVLPW
TLRNRCDPGQRRQLGQALIHHFCEAHGHELTVDHTNGLVELFTHGFVHAM
DRLIQSRLTYGQAPTYLYRFDFDSPDFNFYRIRFMGKEQRGVGHVDELGY
IFKLPATFKLDKSRPEFTAIRRLVAMFVQFAATSDPNAPLTKSLVDWKPV
TRFGKRMVLNISEELKFIPQPEMPKLKFFDRLYEMAGVPLFASFLDH

BO11688.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:59:18
Subject Length Description Subject Range Query Range Score Percent Strand
alpha-Est4-PA 541 CG1082-PA 1..541 1..541 2878 100 Plus
alpha-Est5-PA 542 CG1089-PA 17..537 17..534 1071 40.3 Plus
alpha-Est5-PB 543 CG1089-PB 18..538 17..534 1071 40.3 Plus
alpha-Est3-PD 543 CG1257-PD 6..543 12..537 990 39 Plus
alpha-Est3-PB 543 CG1257-PB 6..543 12..537 990 39 Plus