Clone BO11696 Report

Search the DGRC for BO11696

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:116
Well:96
Vector:pDNR-Dual
Associated Gene/TranscriptTsp42Ei-RA
Protein status:BO11696.pep:
Sequenced Size:721

Clone Sequence Records

BO11696.5prime Sequence

719 bp (711 high quality bases) assembled on 2006-04-19

> BO11696.5prime
GAAGTTATCAGTCGACATGGGTCTGGGCGCCACTACAGTGAAGCATGTGC
TGCTTTTGCTGAACTTTGTGTTTTCCGTGCTCGGGCTGGCGCTGATCGCC
TTCGGAATTTTCTTTTTGATCTCCGCCGCTGAGAATGCAGTCAGCATTGG
GAAAAATGTGGCCGGGGGCCTAATCATCGCCTTGGGCGTTGTCATCCTCA
TCATTGCGATCTTCGGCTGCCTGGCTGCCATCCATGAGGCTCCTGTGAGG
CTCCTCATATATGTGGGAGCCGTGGTGCTGCTGATCCTCGCCCAGCTAAT
TTTTCTCGGCATGTCCTCACACGGCACCAAGGATGGAATCTCGGGCAGCA
TCAACGAGGGATTCGACCGTCTCTGGGAATCGGAGCGCAACCAAACAGGC
GCCTTGAGCTACTACGAGTCCTGGCTGCAGTGCTGCGGGGTCAACAGTTC
CGAGGACTACTGGATCATCCATCATGGCATTCCGTCCAGCTGTTGTCCAG
AAAGCAAGTGCATGGACACTCCGAGCAGGGTCTTCAAGACGGGCTGCAAG
GCCGCATTCGTGAAGTATCTGGACGATAAGTTACTGGTGTTCAAAATCGT
CTGCTGGTTGCTTGTCATCGGAGAGGCTGTGGGAGCTGTTTTCGGTTGGC
TGCTCTACAGCAGCGTAAAGAACCAAAGCCGCCGCAACAATGCCGTCTGG
ATGGCAAGCTTTCTAGACC

BO11696.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:28:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG12843-PA 690 Tsp42Ei-RA 1..687 17..703 3435 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:30:52
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42Ei-RB 1140 CG12843-RB 211..898 16..703 3440 100 Plus
Tsp42Ei-RA 1304 CG12843-RA 211..898 16..703 3440 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:30:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7036043..7036409 260..626 1835 100 Plus
2R 25286936 2R 7035470..7035652 77..259 915 100 Plus
2R 25286936 2R 7036464..7036543 624..703 400 100 Plus
2R 25286936 2R 7035335..7035398 16..79 320 100 Plus
Blast to na_te.dros performed on 2015-02-12 17:30:51 has no hits.

BO11696.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:14:01 Download gff for BO11696.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12843-PA 1..690 17..706 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:40:39 Download gff for BO11696.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12843-PA 1..690 17..706 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 18:32:12 Download gff for BO11696.5prime
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ei-RA 204..898 9..703 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:32:47 Download gff for BO11696.5prime
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ei-RA 204..898 9..703 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:32:47 Download gff for BO11696.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7035328..7035395 9..76 95 -> Plus
2R 7035470..7035652 77..259 100 -> Plus
2R 7036043..7036408 260..625 100 -> Plus
2R 7036466..7036543 626..703 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 18:32:12 Download gff for BO11696.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2922833..2922900 9..76 95 -> Plus
arm_2R 2922975..2923157 77..259 100 -> Plus
arm_2R 2923548..2923913 260..625 100 -> Plus
arm_2R 2923971..2924048 626..703 100   Plus

BO11696.complete Sequence

721 bp assembled on 2008-01-16

GenBank Submission: FJ632160

> BO11696.complete
GAAGTTATCAGTCGACATGGGTCTGGGCGCCACTACAGTGAAGCATGTGC
TGCTTTTGCTGAACTTTGTGTTTTCCGTGCTCGGGCTGGCGCTGATCGCC
TTCGGAATTTTCTTTTTGATCTCCGCCGCTGAGAATGCAGTCAGCATTGG
GAAAAATGTGGCCGGGGGCCTAATCATCGCCTTGGGCGTTGTCATCCTCA
TCATTGCGATCTTCGGCTGCCTGGCTGCCATCCATGAGGCTCCTGTGAGG
CTCCTCATATATGTGGGAGCCGTGGTGCTGCTGATCCTCGCCCAGCTAAT
TTTTCTCGGCATGTCCTCACACGGCACCAAGGATGGAATCTCGGGCAGCA
TCAACGAGGGATTCGACCGTCTCTGGGAATCGGAGCGCAACCAAACAGGC
GCCTTGAGCTACTACGAGTCCTGGCTGCAGTGCTGCGGGGTCAACAGTTC
CGAGGACTACTGGATCATCCATCATGGCATTCCGTCCAGCTGTTGTCCAG
AAAGCAAGTGCATGGACACTCCGAGCAGGGTCTTCAAGACGGGCTGCAAG
GCCGCATTCGTGAAGTATCTGGACGATAAGTTACTGGTGTTCAAAATCGT
CTGCTGGTTGCTTGTCATCGGAGAGGCTGTGGGAGCTGTTTTCGGTTGGC
TGCTCTACAGCAGCGTAAAGAACCAAAGCCGCCGCAACAATGCCGTCTGG
ATGGCAAGCTTTCTAGACCAT

BO11696.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:03:44
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42Ei-RB 690 CG12843-PB 1..687 17..703 3435 100 Plus
Tsp42Ei-RA 690 CG12843-PA 1..687 17..703 3435 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:03:45
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42Ei-RB 1140 CG12843-RB 211..898 16..703 3440 100 Plus
Tsp42Ei-RA 1304 CG12843-RA 211..898 16..703 3440 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:03:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7036043..7036409 260..626 1835 100 Plus
2R 25286936 2R 7035470..7035652 77..259 915 100 Plus
2R 25286936 2R 7036464..7036543 624..703 400 100 Plus
2R 25286936 2R 7035335..7035398 16..79 320 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:03:43 has no hits.

BO11696.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:58:56 Download gff for BO11696.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ei-RA 1..690 17..706 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:31:40 Download gff for BO11696.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ei-RA 210..896 17..705 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:25 Download gff for BO11696.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ei-RA 212..898 17..705 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:58:56 Download gff for BO11696.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ei-RA 202..896 9..703 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:09:25 Download gff for BO11696.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ei-RA 212..898 17..705 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:09:25 Download gff for BO11696.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7035336..7035395 17..76 100 -> Plus
2R 7035470..7035652 77..259 100 -> Plus
2R 7036043..7036408 260..625 100 -> Plus
2R 7036466..7036543 626..705 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:25 Download gff for BO11696.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2922841..2922900 17..76 100 -> Plus
arm_2R 2922975..2923157 77..259 100 -> Plus
arm_2R 2923548..2923913 260..625 100 -> Plus
arm_2R 2923971..2924048 626..705 97   Plus

BO11696.pep Sequence

Translation from 16 to 721

> BO11696.pep
MGLGATTVKHVLLLLNFVFSVLGLALIAFGIFFLISAAENAVSIGKNVAG
GLIIALGVVILIIAIFGCLAAIHEAPVRLLIYVGAVVLLILAQLIFLGMS
SHGTKDGISGSINEGFDRLWESERNQTGALSYYESWLQCCGVNSSEDYWI
IHHGIPSSCCPESKCMDTPSRVFKTGCKAAFVKYLDDKLLVFKIVCWLLV
IGEAVGAVFGWLLYSSVKNQSRRNNAVWMASFLDH

BO11696.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:41:25
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42Ei-PB 229 CG12843-PB 1..229 1..229 1185 100 Plus
Tsp42Ei-PA 229 CG12843-PA 1..229 1..229 1185 100 Plus
Tsp42Eh-PB 231 CG12844-PB 8..226 8..223 323 31.8 Plus
Tsp42Ef-PA 220 CG12845-PA 5..218 6..224 266 29 Plus
Tsp42El-PA 217 CG12840-PA 1..216 1..225 239 28.1 Plus