Clone Sequence Records
BO11696.5prime Sequence
719 bp (711 high quality bases) assembled on 2006-04-19
> BO11696.5prime
GAAGTTATCAGTCGACATGGGTCTGGGCGCCACTACAGTGAAGCATGTGC
TGCTTTTGCTGAACTTTGTGTTTTCCGTGCTCGGGCTGGCGCTGATCGCC
TTCGGAATTTTCTTTTTGATCTCCGCCGCTGAGAATGCAGTCAGCATTGG
GAAAAATGTGGCCGGGGGCCTAATCATCGCCTTGGGCGTTGTCATCCTCA
TCATTGCGATCTTCGGCTGCCTGGCTGCCATCCATGAGGCTCCTGTGAGG
CTCCTCATATATGTGGGAGCCGTGGTGCTGCTGATCCTCGCCCAGCTAAT
TTTTCTCGGCATGTCCTCACACGGCACCAAGGATGGAATCTCGGGCAGCA
TCAACGAGGGATTCGACCGTCTCTGGGAATCGGAGCGCAACCAAACAGGC
GCCTTGAGCTACTACGAGTCCTGGCTGCAGTGCTGCGGGGTCAACAGTTC
CGAGGACTACTGGATCATCCATCATGGCATTCCGTCCAGCTGTTGTCCAG
AAAGCAAGTGCATGGACACTCCGAGCAGGGTCTTCAAGACGGGCTGCAAG
GCCGCATTCGTGAAGTATCTGGACGATAAGTTACTGGTGTTCAAAATCGT
CTGCTGGTTGCTTGTCATCGGAGAGGCTGTGGGAGCTGTTTTCGGTTGGC
TGCTCTACAGCAGCGTAAAGAACCAAAGCCGCCGCAACAATGCCGTCTGG
ATGGCAAGCTTTCTAGACC
BO11696.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:28:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12843-PA | 690 | Tsp42Ei-RA | 1..687 | 17..703 | 3435 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:30:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42Ei-RB | 1140 | CG12843-RB | 211..898 | 16..703 | 3440 | 100 | Plus |
Tsp42Ei-RA | 1304 | CG12843-RA | 211..898 | 16..703 | 3440 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:30:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7036043..7036409 | 260..626 | 1835 | 100 | Plus |
2R | 25286936 | 2R | 7035470..7035652 | 77..259 | 915 | 100 | Plus |
2R | 25286936 | 2R | 7036464..7036543 | 624..703 | 400 | 100 | Plus |
2R | 25286936 | 2R | 7035335..7035398 | 16..79 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:30:51 has no hits.
BO11696.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:14:01 Download gff for
BO11696.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12843-PA | 1..690 | 17..706 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:40:39 Download gff for
BO11696.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12843-PA | 1..690 | 17..706 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 18:32:12 Download gff for
BO11696.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ei-RA | 204..898 | 9..703 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:32:47 Download gff for
BO11696.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ei-RA | 204..898 | 9..703 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:32:47 Download gff for
BO11696.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7035328..7035395 | 9..76 | 95 | -> | Plus |
2R | 7035470..7035652 | 77..259 | 100 | -> | Plus |
2R | 7036043..7036408 | 260..625 | 100 | -> | Plus |
2R | 7036466..7036543 | 626..703 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 18:32:12 Download gff for
BO11696.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2922833..2922900 | 9..76 | 95 | -> | Plus |
arm_2R | 2922975..2923157 | 77..259 | 100 | -> | Plus |
arm_2R | 2923548..2923913 | 260..625 | 100 | -> | Plus |
arm_2R | 2923971..2924048 | 626..703 | 100 | | Plus |
BO11696.complete Sequence
721 bp assembled on 2008-01-16
GenBank Submission: FJ632160
> BO11696.complete
GAAGTTATCAGTCGACATGGGTCTGGGCGCCACTACAGTGAAGCATGTGC
TGCTTTTGCTGAACTTTGTGTTTTCCGTGCTCGGGCTGGCGCTGATCGCC
TTCGGAATTTTCTTTTTGATCTCCGCCGCTGAGAATGCAGTCAGCATTGG
GAAAAATGTGGCCGGGGGCCTAATCATCGCCTTGGGCGTTGTCATCCTCA
TCATTGCGATCTTCGGCTGCCTGGCTGCCATCCATGAGGCTCCTGTGAGG
CTCCTCATATATGTGGGAGCCGTGGTGCTGCTGATCCTCGCCCAGCTAAT
TTTTCTCGGCATGTCCTCACACGGCACCAAGGATGGAATCTCGGGCAGCA
TCAACGAGGGATTCGACCGTCTCTGGGAATCGGAGCGCAACCAAACAGGC
GCCTTGAGCTACTACGAGTCCTGGCTGCAGTGCTGCGGGGTCAACAGTTC
CGAGGACTACTGGATCATCCATCATGGCATTCCGTCCAGCTGTTGTCCAG
AAAGCAAGTGCATGGACACTCCGAGCAGGGTCTTCAAGACGGGCTGCAAG
GCCGCATTCGTGAAGTATCTGGACGATAAGTTACTGGTGTTCAAAATCGT
CTGCTGGTTGCTTGTCATCGGAGAGGCTGTGGGAGCTGTTTTCGGTTGGC
TGCTCTACAGCAGCGTAAAGAACCAAAGCCGCCGCAACAATGCCGTCTGG
ATGGCAAGCTTTCTAGACCAT
BO11696.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:03:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42Ei-RB | 690 | CG12843-PB | 1..687 | 17..703 | 3435 | 100 | Plus |
Tsp42Ei-RA | 690 | CG12843-PA | 1..687 | 17..703 | 3435 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:03:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42Ei-RB | 1140 | CG12843-RB | 211..898 | 16..703 | 3440 | 100 | Plus |
Tsp42Ei-RA | 1304 | CG12843-RA | 211..898 | 16..703 | 3440 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:03:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7036043..7036409 | 260..626 | 1835 | 100 | Plus |
2R | 25286936 | 2R | 7035470..7035652 | 77..259 | 915 | 100 | Plus |
2R | 25286936 | 2R | 7036464..7036543 | 624..703 | 400 | 100 | Plus |
2R | 25286936 | 2R | 7035335..7035398 | 16..79 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:03:43 has no hits.
BO11696.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:58:56 Download gff for
BO11696.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ei-RA | 1..690 | 17..706 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:31:40 Download gff for
BO11696.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ei-RA | 210..896 | 17..705 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:25 Download gff for
BO11696.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ei-RA | 212..898 | 17..705 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:58:56 Download gff for
BO11696.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ei-RA | 202..896 | 9..703 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:09:25 Download gff for
BO11696.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ei-RA | 212..898 | 17..705 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:09:25 Download gff for
BO11696.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7035336..7035395 | 17..76 | 100 | -> | Plus |
2R | 7035470..7035652 | 77..259 | 100 | -> | Plus |
2R | 7036043..7036408 | 260..625 | 100 | -> | Plus |
2R | 7036466..7036543 | 626..705 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:25 Download gff for
BO11696.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2922841..2922900 | 17..76 | 100 | -> | Plus |
arm_2R | 2922975..2923157 | 77..259 | 100 | -> | Plus |
arm_2R | 2923548..2923913 | 260..625 | 100 | -> | Plus |
arm_2R | 2923971..2924048 | 626..705 | 97 | | Plus |
BO11696.pep Sequence
Translation from 16 to 721
> BO11696.pep
MGLGATTVKHVLLLLNFVFSVLGLALIAFGIFFLISAAENAVSIGKNVAG
GLIIALGVVILIIAIFGCLAAIHEAPVRLLIYVGAVVLLILAQLIFLGMS
SHGTKDGISGSINEGFDRLWESERNQTGALSYYESWLQCCGVNSSEDYWI
IHHGIPSSCCPESKCMDTPSRVFKTGCKAAFVKYLDDKLLVFKIVCWLLV
IGEAVGAVFGWLLYSSVKNQSRRNNAVWMASFLDH
BO11696.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:41:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42Ei-PB | 229 | CG12843-PB | 1..229 | 1..229 | 1185 | 100 | Plus |
Tsp42Ei-PA | 229 | CG12843-PA | 1..229 | 1..229 | 1185 | 100 | Plus |
Tsp42Eh-PB | 231 | CG12844-PB | 8..226 | 8..223 | 323 | 31.8 | Plus |
Tsp42Ef-PA | 220 | CG12845-PA | 5..218 | 6..224 | 266 | 29 | Plus |
Tsp42El-PA | 217 | CG12840-PA | 1..216 | 1..225 | 239 | 28.1 | Plus |