Clone BO11702 Report

Search the DGRC for BO11702

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:117
Well:2
Vector:pDNR-Dual
Associated Gene/TranscriptCHIP-RA
Protein status:BO11702.pep: validated full length
Sequenced Size:901

Clone Sequence Records

BO11702.3prime Sequence

862 bp (802 high quality bases) assembled on 2006-04-19

> BO11702.3prime
ATGGTCTAGAAAGCTTGCATAATCTAAAGACCATTCATTCTCGGCAATAA
AAGAGTCAACCACTTCCTTCATTGAAAAATTTGGTATTAGTTGATCCTGA
GTGAGCTTAACGCGTGTCACAGGATCGAAATGTCCAACCCGCTGCAAGTG
TTCTTCTATATCTTTTCGTTCATACGTAATTCCAGATGGAGTTATCACAG
GGTCTGTTAATATTTCAAAACTTATTTTGCCACATAGAAAATCGGGAACT
TCACGTTTCTTTCGACGTTCGTCAACCTTAGAAAATATATTGTTAAGTTC
CTTAATATGGTCATCGCATTCTTGCTCAATTTCCTGTTGCTTGTCTTTCA
GCTGCTCATCGTGTACATTTCCATTCAGCTTTAAATTGGCCAAACGGCTT
TCCATGTCCCCTTTTATTAGACCATTTAAATAGCTTTGCAGCTCGATTTC
CTGCTGTATTCGCTTCTCCTCCATAACATTCCAGCGCTTTTTGCGAGCTA
GTCGCAACTGTAGTGTAATATCATCCCCAAAGTTTTGCTTCTGCTCCTTG
GACAGATCGTATGCCCGTTGAAGGTGCTTTATAGCCTCGTCAAAGTTGTC
GATTTCCATGAGTCCTTGGCCCAGGAAGAAGTGACCCTTCAACAGATTCC
CATCGATGTCGAGGGCGCGCCGACTATCCTGGCAGCACAGTTCCCATCTC
TTCAGTTTCAGGTTGCAGAGGGCTCGGTTTGTGAAGTATGTGGCGTTTGT
GGGGTTCTTTATGATGGCCTTTGAGTAGCAATTTATTGCGTCGTCATATT
TTCGGGCTGCAAACAAGCAGTTTCCCTGCTCCTTTAATTGCAGATCTGAT
AAATTGGGCGGG

BO11702.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:28:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG5203-PA 870 CHIP-RA 29..867 857..19 4195 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:20:39
Subject Length Description Subject Range Query Range Score Percent Strand
CHIP-RA 1277 CG5203-RA 320..1158 857..19 4195 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:20:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10438880..10439121 260..19 1210 100 Minus
2L 23513712 2L 10438041..10438239 762..564 995 100 Minus
2L 23513712 2L 10438300..10438442 564..422 715 100 Minus
2L 23513712 2L 10438590..10438697 422..315 540 100 Minus
2L 23513712 2L 10437867..10437961 857..763 475 100 Minus
2L 23513712 2L 10438756..10438812 315..259 285 100 Minus
Blast to na_te.dros performed on 2015-02-10 20:20:38 has no hits.

BO11702.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:14:04 Download gff for BO11702.3prime
Subject Subject Range Query Range Percent Splice Strand
CHIP-PA 23..870 15..862 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:40:42 Download gff for BO11702.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5203-PA 23..870 15..862 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 20:37:38 Download gff for BO11702.3prime
Subject Subject Range Query Range Percent Splice Strand
CHIP-RA 314..1167 8..862 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:12:38 Download gff for BO11702.3prime
Subject Subject Range Query Range Percent Splice Strand
CHIP-RA 314..1167 8..862 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:12:38 Download gff for BO11702.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10438756..10438812 259..315 100 -> Minus
2L 10438882..10439130 8..258 98   Minus
2L 10437861..10437961 763..862 98 -> Minus
2L 10438041..10438239 564..762 100 -> Minus
2L 10438301..10438442 422..563 100 -> Minus
2L 10438591..10438696 316..421 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 20:37:38 Download gff for BO11702.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10437861..10437961 763..862 98 -> Minus
arm_2L 10438041..10438239 564..762 100 -> Minus
arm_2L 10438301..10438442 422..563 100 -> Minus
arm_2L 10438591..10438696 316..421 100 -> Minus
arm_2L 10438756..10438812 259..315 100 -> Minus
arm_2L 10438882..10439130 8..258 98   Minus

BO11702.5prime Sequence

837 bp (809 high quality bases) assembled on 2006-04-19

> BO11702.5prime
GAAGTTATCAGTCGACATGACGACCAAGCACATCTATTCCACGACCAATT
TATCAGATCTGCAATTAAAGGAGCAGGGAAACTGCTTGTTTGCAGCCCGA
AAATATGACGACGCAATAAATTGCTACTCAAAGGCCATCATAAAGAACCC
CACAAACGCCACATACTTCACAAACCGAGCCCTCTGCAACCTGAAACTGA
AGAGATGGGAACTGTGCTGCCAGGATAGTCGGCGCGCCCTCGACATCGAT
GGGAATCTGTTGAAGGGTCACTTCTTCCTGGGCCAAGGACTCATGGAAAT
CGACAACTTTGACGAGGCTATAAAGCACCTTCAACGGGCATACGATCTGT
CCAAGGAGCAGAAGCAAAACTTTGGGGATGATATTACACTACAGTTGCGA
CTAGCTCGCAAAAAGCGCTGGAATGTTATGGAGGAGAAGCGAATACAGCA
GGAAATCGAGCTGCAAAGCTATTTAAATGGTCTAATAAAAGGGGACATGG
AAAGCCGTTTGGCCAATTTAAAGCTGAATGGAAATGTACACGATGAGCAG
CTGAAAGACAAGCAACAGGAAATTGAGCAAGAATGCGATGACCATATTAA
GGAACTTAACAATATATTTTCTAAGGTTGACGAACGTCGAAAGAAACGTG
AAGTTCCCGATTTTCTATGTGGCAAAATAAGTTTTGAAATATTAACAGAC
CCTGTGATAACTCCATCTGGAATTACGTATGAACGAAAAGATATAGAAGA
ACACTTGCAGCGGGTTGGACATTTCGATCCTGTGACACGCGTTAAGCTCA
CTCAGGATCACTAATACCAAATTTTTCAATGAAGGAA

BO11702.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:28:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG5203-PA 870 CHIP-RA 1..794 17..810 3970 100 Plus
CG5203-PA 870 CHIP-RA 795..822 810..837 140 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:02:06
Subject Length Description Subject Range Query Range Score Percent Strand
CHIP-RA 1277 CG5203-RA 292..1113 17..837 4085 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:02:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10438041..10438239 140..338 995 100 Plus
2L 23513712 2L 10438880..10439076 642..837 935 99.5 Plus
2L 23513712 2L 10438300..10438442 338..480 715 100 Plus
2L 23513712 2L 10437839..10437961 17..139 615 100 Plus
2L 23513712 2L 10438590..10438697 480..587 540 100 Plus
2L 23513712 2L 10438756..10438812 587..643 285 100 Plus
Blast to na_te.dros performed on 2015-02-12 20:02:05 has no hits.

BO11702.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:14:05 Download gff for BO11702.5prime
Subject Subject Range Query Range Percent Splice Strand
CHIP-PA 1..820 17..835 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:40:44 Download gff for BO11702.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5203-PA 1..820 17..835 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 11:53:10 Download gff for BO11702.5prime
Subject Subject Range Query Range Percent Splice Strand
CHIP-RA 284..1113 8..837 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:32:32 Download gff for BO11702.5prime
Subject Subject Range Query Range Percent Splice Strand
CHIP-RA 284..1113 8..837 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:32:32 Download gff for BO11702.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10438882..10439076 644..837 99   Plus
2L 10438041..10438239 140..338 100 -> Plus
2L 10438301..10438442 339..480 100 -> Plus
2L 10438591..10438696 481..586 100 -> Plus
2L 10438756..10438812 587..643 100 -> Plus
2L 10437831..10437961 8..139 96 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 11:53:10 Download gff for BO11702.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10437831..10437961 8..139 96 -> Plus
arm_2L 10438041..10438239 140..338 100 -> Plus
arm_2L 10438301..10438442 339..480 100 -> Plus
arm_2L 10438591..10438696 481..586 100 -> Plus
arm_2L 10438756..10438812 587..643 100 -> Plus
arm_2L 10438882..10439076 644..837 99   Plus

BO11702.complete Sequence

901 bp assembled on 2006-10-11

GenBank Submission: FJ632161

> BO11702.complete
GAAGTTATCAGTCGACATGACGACCAAGCACATCTATTCCACGACCAATT
TATCAGATCTGCAATTAAAGGAGCAGGGAAACTGCTTGTTTGCAGCCCGA
AAATATGACGACGCAATAAATTGCTACTCAAAGGCCATCATAAAGAACCC
CACAAACGCCACATACTTCACAAACCGAGCCCTCTGCAACCTGAAACTGA
AGAGATGGGAACTGTGCTGCCAGGATAGTCGGCGCGCCCTCGACATCGAT
GGGAATCTGTTGAAGGGTCACTTCTTCCTGGGCCAAGGACTCATGGAAAT
CGACAACTTTGACGAGGCTATAAAGCACCTTCAACGGGCATACGATCTGT
CCAAGGAGCAGAAGCAAAACTTTGGGGATGATATTACACTACAGTTGCGA
CTAGCTCGCAAAAAGCGCTGGAATGTTATGGAGGAGAAGCGAATACAGCA
GGAAATCGAGCTGCAAAGCTATTTAAATGGTCTAATAAAAGGGGACATGG
AAAGCCGTTTGGCCAATTTAAAGCTGAATGGAAATGTACACGATGAGCAG
CTGAAAGACAAGCAACAGGAAATTGAGCAAGAATGCGATGACCATATTAA
GGAACTTAACAATATATTTTCTAAGGTTGACGAACGTCGAAAGAAACGTG
AAGTTCCCGATTTTCTATGTGGCAAAATAAGTTTTGAAATATTAACAGAC
CCTGTGATAACTCCATCTGGAATTACGTATGAACGAAAAGATATAGAAGA
ACACTTGCAGCGGGTTGGACATTTCGATCCTGTGACACGCGTTAAGCTCA
CTCAGGATCAACTAATACCAAATTTTTCAATGAAGGAAGTGGTTGACTCT
TTTATTGCCGAGAATGAATGGTCTTTAGATTATGCAAGCTTTCTAGACCA
T

BO11702.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:28:32
Subject Length Description Subject Range Query Range Score Percent Strand
CHIP-RA 870 CG5203-PA 1..867 17..883 4335 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:28:33
Subject Length Description Subject Range Query Range Score Percent Strand
CHIP-RA 1277 CG5203-RA 292..1158 17..883 4335 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:28:30
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10438880..10439121 642..883 1210 100 Plus
2L 23513712 2L 10438041..10438239 140..338 995 100 Plus
2L 23513712 2L 10438300..10438442 338..480 715 100 Plus
2L 23513712 2L 10437839..10437961 17..139 615 100 Plus
2L 23513712 2L 10438590..10438697 480..587 540 100 Plus
2L 23513712 2L 10438756..10438812 587..643 285 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:28:31 has no hits.

BO11702.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:40:39 Download gff for BO11702.complete
Subject Subject Range Query Range Percent Splice Strand
CHIP-RA 1..870 17..887 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:03:30 Download gff for BO11702.complete
Subject Subject Range Query Range Percent Splice Strand
CHIP-RA 281..1164 8..894 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:59:18 Download gff for BO11702.complete
Subject Subject Range Query Range Percent Splice Strand
CHIP-RA 292..1158 17..885 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:40:40 Download gff for BO11702.complete
Subject Subject Range Query Range Percent Splice Strand
CHIP-RA 281..1164 8..894 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:19:43 Download gff for BO11702.complete
Subject Subject Range Query Range Percent Splice Strand
CHIP-RA 292..1158 17..885 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:19:43 Download gff for BO11702.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10438301..10438442 339..480 100 -> Plus
2L 10438591..10438696 481..586 100 -> Plus
2L 10438756..10438812 587..643 100 -> Plus
2L 10438882..10439121 644..885 99   Plus
2L 10437839..10437961 17..139 100 -> Plus
2L 10438041..10438239 140..338 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:59:18 Download gff for BO11702.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10437839..10437961 17..139 100 -> Plus
arm_2L 10438041..10438239 140..338 100 -> Plus
arm_2L 10438301..10438442 339..480 100 -> Plus
arm_2L 10438591..10438696 481..586 100 -> Plus
arm_2L 10438756..10438812 587..643 100 -> Plus
arm_2L 10438882..10439121 644..885 99   Plus

BO11702.pep Sequence

Translation from 16 to 901

> BO11702.pep
MTTKHIYSTTNLSDLQLKEQGNCLFAARKYDDAINCYSKAIIKNPTNATY
FTNRALCNLKLKRWELCCQDSRRALDIDGNLLKGHFFLGQGLMEIDNFDE
AIKHLQRAYDLSKEQKQNFGDDITLQLRLARKKRWNVMEEKRIQQEIELQ
SYLNGLIKGDMESRLANLKLNGNVHDEQLKDKQQEIEQECDDHIKELNNI
FSKVDERRKKREVPDFLCGKISFEILTDPVITPSGITYERKDIEEHLQRV
GHFDPVTRVKLTQDQLIPNFSMKEVVDSFIAENEWSLDYASFLDH

BO11702.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:52:00
Subject Length Description Subject Range Query Range Score Percent Strand
CHIP-PA 289 CG5203-PA 1..289 1..289 1519 100 Plus