Clone Sequence Records
BO11702.3prime Sequence
862 bp (802 high quality bases) assembled on 2006-04-19
> BO11702.3prime
ATGGTCTAGAAAGCTTGCATAATCTAAAGACCATTCATTCTCGGCAATAA
AAGAGTCAACCACTTCCTTCATTGAAAAATTTGGTATTAGTTGATCCTGA
GTGAGCTTAACGCGTGTCACAGGATCGAAATGTCCAACCCGCTGCAAGTG
TTCTTCTATATCTTTTCGTTCATACGTAATTCCAGATGGAGTTATCACAG
GGTCTGTTAATATTTCAAAACTTATTTTGCCACATAGAAAATCGGGAACT
TCACGTTTCTTTCGACGTTCGTCAACCTTAGAAAATATATTGTTAAGTTC
CTTAATATGGTCATCGCATTCTTGCTCAATTTCCTGTTGCTTGTCTTTCA
GCTGCTCATCGTGTACATTTCCATTCAGCTTTAAATTGGCCAAACGGCTT
TCCATGTCCCCTTTTATTAGACCATTTAAATAGCTTTGCAGCTCGATTTC
CTGCTGTATTCGCTTCTCCTCCATAACATTCCAGCGCTTTTTGCGAGCTA
GTCGCAACTGTAGTGTAATATCATCCCCAAAGTTTTGCTTCTGCTCCTTG
GACAGATCGTATGCCCGTTGAAGGTGCTTTATAGCCTCGTCAAAGTTGTC
GATTTCCATGAGTCCTTGGCCCAGGAAGAAGTGACCCTTCAACAGATTCC
CATCGATGTCGAGGGCGCGCCGACTATCCTGGCAGCACAGTTCCCATCTC
TTCAGTTTCAGGTTGCAGAGGGCTCGGTTTGTGAAGTATGTGGCGTTTGT
GGGGTTCTTTATGATGGCCTTTGAGTAGCAATTTATTGCGTCGTCATATT
TTCGGGCTGCAAACAAGCAGTTTCCCTGCTCCTTTAATTGCAGATCTGAT
AAATTGGGCGGG
BO11702.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:28:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5203-PA | 870 | CHIP-RA | 29..867 | 857..19 | 4195 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:20:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CHIP-RA | 1277 | CG5203-RA | 320..1158 | 857..19 | 4195 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:20:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10438880..10439121 | 260..19 | 1210 | 100 | Minus |
2L | 23513712 | 2L | 10438041..10438239 | 762..564 | 995 | 100 | Minus |
2L | 23513712 | 2L | 10438300..10438442 | 564..422 | 715 | 100 | Minus |
2L | 23513712 | 2L | 10438590..10438697 | 422..315 | 540 | 100 | Minus |
2L | 23513712 | 2L | 10437867..10437961 | 857..763 | 475 | 100 | Minus |
2L | 23513712 | 2L | 10438756..10438812 | 315..259 | 285 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:20:38 has no hits.
BO11702.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:14:04 Download gff for
BO11702.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHIP-PA | 23..870 | 15..862 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:40:42 Download gff for
BO11702.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5203-PA | 23..870 | 15..862 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 20:37:38 Download gff for
BO11702.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHIP-RA | 314..1167 | 8..862 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:12:38 Download gff for
BO11702.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHIP-RA | 314..1167 | 8..862 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:12:38 Download gff for
BO11702.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10438756..10438812 | 259..315 | 100 | -> | Minus |
2L | 10438882..10439130 | 8..258 | 98 | | Minus |
2L | 10437861..10437961 | 763..862 | 98 | -> | Minus |
2L | 10438041..10438239 | 564..762 | 100 | -> | Minus |
2L | 10438301..10438442 | 422..563 | 100 | -> | Minus |
2L | 10438591..10438696 | 316..421 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 20:37:38 Download gff for
BO11702.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10437861..10437961 | 763..862 | 98 | -> | Minus |
arm_2L | 10438041..10438239 | 564..762 | 100 | -> | Minus |
arm_2L | 10438301..10438442 | 422..563 | 100 | -> | Minus |
arm_2L | 10438591..10438696 | 316..421 | 100 | -> | Minus |
arm_2L | 10438756..10438812 | 259..315 | 100 | -> | Minus |
arm_2L | 10438882..10439130 | 8..258 | 98 | | Minus |
BO11702.5prime Sequence
837 bp (809 high quality bases) assembled on 2006-04-19
> BO11702.5prime
GAAGTTATCAGTCGACATGACGACCAAGCACATCTATTCCACGACCAATT
TATCAGATCTGCAATTAAAGGAGCAGGGAAACTGCTTGTTTGCAGCCCGA
AAATATGACGACGCAATAAATTGCTACTCAAAGGCCATCATAAAGAACCC
CACAAACGCCACATACTTCACAAACCGAGCCCTCTGCAACCTGAAACTGA
AGAGATGGGAACTGTGCTGCCAGGATAGTCGGCGCGCCCTCGACATCGAT
GGGAATCTGTTGAAGGGTCACTTCTTCCTGGGCCAAGGACTCATGGAAAT
CGACAACTTTGACGAGGCTATAAAGCACCTTCAACGGGCATACGATCTGT
CCAAGGAGCAGAAGCAAAACTTTGGGGATGATATTACACTACAGTTGCGA
CTAGCTCGCAAAAAGCGCTGGAATGTTATGGAGGAGAAGCGAATACAGCA
GGAAATCGAGCTGCAAAGCTATTTAAATGGTCTAATAAAAGGGGACATGG
AAAGCCGTTTGGCCAATTTAAAGCTGAATGGAAATGTACACGATGAGCAG
CTGAAAGACAAGCAACAGGAAATTGAGCAAGAATGCGATGACCATATTAA
GGAACTTAACAATATATTTTCTAAGGTTGACGAACGTCGAAAGAAACGTG
AAGTTCCCGATTTTCTATGTGGCAAAATAAGTTTTGAAATATTAACAGAC
CCTGTGATAACTCCATCTGGAATTACGTATGAACGAAAAGATATAGAAGA
ACACTTGCAGCGGGTTGGACATTTCGATCCTGTGACACGCGTTAAGCTCA
CTCAGGATCACTAATACCAAATTTTTCAATGAAGGAA
BO11702.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:28:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5203-PA | 870 | CHIP-RA | 1..794 | 17..810 | 3970 | 100 | Plus |
CG5203-PA | 870 | CHIP-RA | 795..822 | 810..837 | 140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:02:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CHIP-RA | 1277 | CG5203-RA | 292..1113 | 17..837 | 4085 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:02:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10438041..10438239 | 140..338 | 995 | 100 | Plus |
2L | 23513712 | 2L | 10438880..10439076 | 642..837 | 935 | 99.5 | Plus |
2L | 23513712 | 2L | 10438300..10438442 | 338..480 | 715 | 100 | Plus |
2L | 23513712 | 2L | 10437839..10437961 | 17..139 | 615 | 100 | Plus |
2L | 23513712 | 2L | 10438590..10438697 | 480..587 | 540 | 100 | Plus |
2L | 23513712 | 2L | 10438756..10438812 | 587..643 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 20:02:05 has no hits.
BO11702.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:14:05 Download gff for
BO11702.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHIP-PA | 1..820 | 17..835 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:40:44 Download gff for
BO11702.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5203-PA | 1..820 | 17..835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 11:53:10 Download gff for
BO11702.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHIP-RA | 284..1113 | 8..837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:32:32 Download gff for
BO11702.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHIP-RA | 284..1113 | 8..837 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:32:32 Download gff for
BO11702.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10438882..10439076 | 644..837 | 99 | | Plus |
2L | 10438041..10438239 | 140..338 | 100 | -> | Plus |
2L | 10438301..10438442 | 339..480 | 100 | -> | Plus |
2L | 10438591..10438696 | 481..586 | 100 | -> | Plus |
2L | 10438756..10438812 | 587..643 | 100 | -> | Plus |
2L | 10437831..10437961 | 8..139 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 11:53:10 Download gff for
BO11702.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10437831..10437961 | 8..139 | 96 | -> | Plus |
arm_2L | 10438041..10438239 | 140..338 | 100 | -> | Plus |
arm_2L | 10438301..10438442 | 339..480 | 100 | -> | Plus |
arm_2L | 10438591..10438696 | 481..586 | 100 | -> | Plus |
arm_2L | 10438756..10438812 | 587..643 | 100 | -> | Plus |
arm_2L | 10438882..10439076 | 644..837 | 99 | | Plus |
BO11702.complete Sequence
901 bp assembled on 2006-10-11
GenBank Submission: FJ632161
> BO11702.complete
GAAGTTATCAGTCGACATGACGACCAAGCACATCTATTCCACGACCAATT
TATCAGATCTGCAATTAAAGGAGCAGGGAAACTGCTTGTTTGCAGCCCGA
AAATATGACGACGCAATAAATTGCTACTCAAAGGCCATCATAAAGAACCC
CACAAACGCCACATACTTCACAAACCGAGCCCTCTGCAACCTGAAACTGA
AGAGATGGGAACTGTGCTGCCAGGATAGTCGGCGCGCCCTCGACATCGAT
GGGAATCTGTTGAAGGGTCACTTCTTCCTGGGCCAAGGACTCATGGAAAT
CGACAACTTTGACGAGGCTATAAAGCACCTTCAACGGGCATACGATCTGT
CCAAGGAGCAGAAGCAAAACTTTGGGGATGATATTACACTACAGTTGCGA
CTAGCTCGCAAAAAGCGCTGGAATGTTATGGAGGAGAAGCGAATACAGCA
GGAAATCGAGCTGCAAAGCTATTTAAATGGTCTAATAAAAGGGGACATGG
AAAGCCGTTTGGCCAATTTAAAGCTGAATGGAAATGTACACGATGAGCAG
CTGAAAGACAAGCAACAGGAAATTGAGCAAGAATGCGATGACCATATTAA
GGAACTTAACAATATATTTTCTAAGGTTGACGAACGTCGAAAGAAACGTG
AAGTTCCCGATTTTCTATGTGGCAAAATAAGTTTTGAAATATTAACAGAC
CCTGTGATAACTCCATCTGGAATTACGTATGAACGAAAAGATATAGAAGA
ACACTTGCAGCGGGTTGGACATTTCGATCCTGTGACACGCGTTAAGCTCA
CTCAGGATCAACTAATACCAAATTTTTCAATGAAGGAAGTGGTTGACTCT
TTTATTGCCGAGAATGAATGGTCTTTAGATTATGCAAGCTTTCTAGACCA
T
BO11702.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:28:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CHIP-RA | 870 | CG5203-PA | 1..867 | 17..883 | 4335 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:28:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CHIP-RA | 1277 | CG5203-RA | 292..1158 | 17..883 | 4335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:28:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10438880..10439121 | 642..883 | 1210 | 100 | Plus |
2L | 23513712 | 2L | 10438041..10438239 | 140..338 | 995 | 100 | Plus |
2L | 23513712 | 2L | 10438300..10438442 | 338..480 | 715 | 100 | Plus |
2L | 23513712 | 2L | 10437839..10437961 | 17..139 | 615 | 100 | Plus |
2L | 23513712 | 2L | 10438590..10438697 | 480..587 | 540 | 100 | Plus |
2L | 23513712 | 2L | 10438756..10438812 | 587..643 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:28:31 has no hits.
BO11702.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:40:39 Download gff for
BO11702.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHIP-RA | 1..870 | 17..887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:03:30 Download gff for
BO11702.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHIP-RA | 281..1164 | 8..894 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:59:18 Download gff for
BO11702.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHIP-RA | 292..1158 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:40:40 Download gff for
BO11702.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHIP-RA | 281..1164 | 8..894 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:19:43 Download gff for
BO11702.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHIP-RA | 292..1158 | 17..885 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:19:43 Download gff for
BO11702.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10438301..10438442 | 339..480 | 100 | -> | Plus |
2L | 10438591..10438696 | 481..586 | 100 | -> | Plus |
2L | 10438756..10438812 | 587..643 | 100 | -> | Plus |
2L | 10438882..10439121 | 644..885 | 99 | | Plus |
2L | 10437839..10437961 | 17..139 | 100 | -> | Plus |
2L | 10438041..10438239 | 140..338 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:59:18 Download gff for
BO11702.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10437839..10437961 | 17..139 | 100 | -> | Plus |
arm_2L | 10438041..10438239 | 140..338 | 100 | -> | Plus |
arm_2L | 10438301..10438442 | 339..480 | 100 | -> | Plus |
arm_2L | 10438591..10438696 | 481..586 | 100 | -> | Plus |
arm_2L | 10438756..10438812 | 587..643 | 100 | -> | Plus |
arm_2L | 10438882..10439121 | 644..885 | 99 | | Plus |
BO11702.pep Sequence
Translation from 16 to 901
> BO11702.pep
MTTKHIYSTTNLSDLQLKEQGNCLFAARKYDDAINCYSKAIIKNPTNATY
FTNRALCNLKLKRWELCCQDSRRALDIDGNLLKGHFFLGQGLMEIDNFDE
AIKHLQRAYDLSKEQKQNFGDDITLQLRLARKKRWNVMEEKRIQQEIELQ
SYLNGLIKGDMESRLANLKLNGNVHDEQLKDKQQEIEQECDDHIKELNNI
FSKVDERRKKREVPDFLCGKISFEILTDPVITPSGITYERKDIEEHLQRV
GHFDPVTRVKLTQDQLIPNFSMKEVVDSFIAENEWSLDYASFLDH
BO11702.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:52:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CHIP-PA | 289 | CG5203-PA | 1..289 | 1..289 | 1519 | 100 | Plus |