Clone BO11712 Report

Search the DGRC for BO11712

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:117
Well:12
Vector:pDNR-Dual
Associated Gene/TranscriptmRpS11-RA
Protein status:BO11712.pep: validated full length
Sequenced Size:634

Clone Sequence Records

BO11712.3prime Sequence

632 bp (631 high quality bases) assembled on 2006-04-19

> BO11712.3prime
ATGGTCTAGAAAGCTTGCAAGACTTCTCTGCTTTCGGGGTCTTGGAGGAT
TGAAGGAAACATGTGTGTTGTCGGTAATGGAAACGATGTTCAGCCCACCC
ATTTGCAGTCCTTTGATGGCCGACATTCTTCCAGGGCCAAGACCACGAAC
CTTTACTCGCACTGTCTTCCAGCCCAATTCAATGGCTTTTCCACTAATGG
TAACCGCTGTAGCTTGAGCTGCTATGTTGGTTCCCTTGCGAGTGTTTTTG
AATCCCTCAATTCCACAGGATCGTATCAGCCGGAGGACTCCTTTGTGATC
CGTGACGGAAATAATTGTGTTGTTGGGTGAAACGCGAATGTTGCAGATGG
GCAGCTCGTTGAAGGGTATTCCATTGAATAACGTGTTGGCGGTGCTGGCA
TCCGGGAAAAACTTAGCCTTGCGGTTGATAAGTGTGTCGATGTCCACGGT
CTTTTCGCCCACGGTTCCTTCGTCTTTGGCCGGTAAAGATGCCAGCATTT
CCTTGCGGTCCTCCGCCTTCCGCCAGCAAGCGCTCGTGTGTATCCTAGAA
GTCTGGAGCGGCACAGCGGGCATAGTAATACTCCGAAGAGCACTTAGAAA
TACACTTTTCAGTGACATGTCGACTGATAACT

BO11712.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:28:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG5184-PA 603 mRpS11-RA 1..600 618..19 3000 100 Minus
CG5184-PB 276 mRpS11-RB 1..198 618..421 990 100 Minus
CG5184-PB 276 mRpS11-RB 197..276 355..276 400 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 03:45:09
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS11-RA 729 CG5184-RA 67..666 618..19 3000 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 03:45:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17072798..17072994 618..422 985 100 Minus
3R 32079331 3R 17073052..17073184 422..290 665 100 Minus
3R 32079331 3R 17073627..17073732 124..19 530 100 Minus
3R 32079331 3R 17073236..17073338 292..190 515 100 Minus
3R 32079331 3R 17073502..17073567 189..124 330 100 Minus
Blast to na_te.dros performed on 2015-02-09 03:45:05 has no hits.

BO11712.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:14:24 Download gff for BO11712.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5184-PA 1..603 15..618 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:41:08 Download gff for BO11712.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5184-PA 1..603 15..618 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 07:57:58 Download gff for BO11712.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpS11-RA 67..669 15..618 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 05:28:48 Download gff for BO11712.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpS11-RA 67..669 15..618 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 05:28:48 Download gff for BO11712.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 17073238..17073338 190..290 100 -> Minus
3R 17073502..17073567 124..189 100 -> Minus
3R 17072798..17072994 422..618 100 -> Minus
3R 17073053..17073183 291..421 100 -> Minus
3R 17073628..17073735 15..123 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 07:57:58 Download gff for BO11712.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12898520..12898716 422..618 100 -> Minus
arm_3R 12898775..12898905 291..421 100 -> Minus
arm_3R 12898960..12899060 190..290 100 -> Minus
arm_3R 12899224..12899289 124..189 100 -> Minus
arm_3R 12899350..12899457 15..123 98   Minus

BO11712.5prime Sequence

632 bp (631 high quality bases) assembled on 2006-04-19

> BO11712.5prime
GAAGTTATCAGTCGACATGTCACTGAAAAGTGTATTTCTAAGTGCTCTTC
GGAGTATTACTATGCCCGCTGTGCCGCTCCAGACTTCTAGGATACACACG
AGCGCTTGCTGGCGGAAGGCGGAGGACCGCAAGGAAATGCTGGCATCTTT
ACCGGCCAAAGACGAAGGAACCGTGGGCGAAAAGACCGTGGACATCGACA
CACTTATCAACCGCAAGGCTAAGTTTTTCCCGGATGCCAGCACCGCCAAC
ACGTTATTCAATGGAATACCCTTCAACGAGCTGCCCATCTGCAACATTCG
CGTTTCACCCAACAACACAATTATTTCCGTCACGGATCACAAAGGAGTCC
TCCGGCTGATACGATCCTGTGGAATTGAGGGATTCAAAAACACTCGCAAG
GGAACCAACATAGCAGCTCAAGCTACAGCGGTTACCATTAGTGGAAAAGC
CATTGAATTGGGCTGGAAGACAGTGCGAGTAAAGGTTCGTGGTCTTGGCC
CTGGAAGAATGTCGGCCATCAAAGGACTGCAAATGGGTGGGCTGAACATC
GTTTCCATTACCGACAACACACATGTTTCCTTCAATCCTCCAAGACCCCG
AAAGCAGAGAAGTCTTGCAAGCTTTCTAGACC

BO11712.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:28:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG5184-PA 603 mRpS11-RA 1..600 17..616 3000 100 Plus
CG5184-PB 276 mRpS11-RB 1..198 17..214 990 100 Plus
CG5184-PB 276 mRpS11-RB 197..276 280..359 400 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:26:20
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS11-RA 729 CG5184-RA 67..666 17..616 3000 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:26:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17072798..17072994 17..213 985 100 Plus
3R 32079331 3R 17073052..17073184 213..345 665 100 Plus
3R 32079331 3R 17073627..17073732 511..616 530 100 Plus
3R 32079331 3R 17073236..17073338 343..445 515 100 Plus
3R 32079331 3R 17073502..17073567 446..511 330 100 Plus
Blast to na_te.dros performed on 2015-02-12 13:26:18 has no hits.

BO11712.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:14:25 Download gff for BO11712.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5184-PA 1..603 17..620 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:41:09 Download gff for BO11712.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5184-PA 1..603 17..620 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:26:46 Download gff for BO11712.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpS11-RA 67..669 17..620 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:19:29 Download gff for BO11712.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpS11-RA 67..669 17..620 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 17:19:29 Download gff for BO11712.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 17072798..17072994 17..213 100 -> Plus
3R 17073053..17073183 214..344 100 -> Plus
3R 17073238..17073338 345..445 100 -> Plus
3R 17073502..17073567 446..511 100 -> Plus
3R 17073628..17073735 512..620 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:26:46 Download gff for BO11712.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12898960..12899060 345..445 100 -> Plus
arm_3R 12899224..12899289 446..511 100 -> Plus
arm_3R 12899350..12899457 512..620 98   Plus
arm_3R 12898520..12898716 17..213 100 -> Plus
arm_3R 12898775..12898905 214..344 100 -> Plus

BO11712.complete Sequence

634 bp assembled on 2006-10-11

GenBank Submission: FJ632162

> BO11712.complete
GAAGTTATCAGTCGACATGTCACTGAAAAGTGTATTTCTAAGTGCTCTTC
GGAGTATTACTATGCCCGCTGTGCCGCTCCAGACTTCTAGGATACACACG
AGCGCTTGCTGGCGGAAGGCGGAGGACCGCAAGGAAATGCTGGCATCTTT
ACCGGCCAAAGACGAAGGAACCGTGGGCGAAAAGACCGTGGACATCGACA
CACTTATCAACCGCAAGGCTAAGTTTTTCCCGGATGCCAGCACCGCCAAC
ACGTTATTCAATGGAATACCCTTCAACGAGCTGCCCATCTGCAACATTCG
CGTTTCACCCAACAACACAATTATTTCCGTCACGGATCACAAAGGAGTCC
TCCGGCTGATACGATCCTGTGGAATTGAGGGATTCAAAAACACTCGCAAG
GGAACCAACATAGCAGCTCAAGCTACAGCGGTTACCATTAGTGGAAAAGC
CATTGAATTGGGCTGGAAGACAGTGCGAGTAAAGGTTCGTGGTCTTGGCC
CTGGAAGAATGTCGGCCATCAAAGGACTGCAAATGGGTGGGCTGAACATC
GTTTCCATTACCGACAACACACATGTTTCCTTCAATCCTCCAAGACCCCG
AAAGCAGAGAAGTCTTGCAAGCTTTCTAGACCAT

BO11712.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:56:01
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS11-RA 603 CG5184-PA 1..600 17..616 3000 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:56:02
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS11-RA 729 CG5184-RA 67..666 17..616 3000 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:55:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17072798..17072994 17..213 985 100 Plus
3R 32079331 3R 17073052..17073184 213..345 665 100 Plus
3R 32079331 3R 17073627..17073732 511..616 530 100 Plus
3R 32079331 3R 17073236..17073338 343..445 515 100 Plus
3R 32079331 3R 17073502..17073567 446..511 330 100 Plus
Blast to na_te.dros performed on 2014-11-27 01:56:00 has no hits.

BO11712.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:44:46 Download gff for BO11712.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS11-RA 1..603 17..620 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:03:55 Download gff for BO11712.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS11-RA 68..670 17..620 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:05:16 Download gff for BO11712.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS11-RA 67..666 17..618 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:44:46 Download gff for BO11712.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS11-RA 68..670 17..620 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:34:33 Download gff for BO11712.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS11-RA 67..666 17..618 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:34:33 Download gff for BO11712.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17072798..17072994 17..213 100 -> Plus
3R 17073053..17073183 214..344 100 -> Plus
3R 17073238..17073338 345..445 100 -> Plus
3R 17073502..17073567 446..511 100 -> Plus
3R 17073628..17073732 512..618 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:05:16 Download gff for BO11712.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12898520..12898716 17..213 100 -> Plus
arm_3R 12898775..12898905 214..344 100 -> Plus
arm_3R 12898960..12899060 345..445 100 -> Plus
arm_3R 12899224..12899289 446..511 100 -> Plus
arm_3R 12899350..12899454 512..618 98   Plus

BO11712.pep Sequence

Translation from 16 to 634

> BO11712.pep
MSLKSVFLSALRSITMPAVPLQTSRIHTSACWRKAEDRKEMLASLPAKDE
GTVGEKTVDIDTLINRKAKFFPDASTANTLFNGIPFNELPICNIRVSPNN
TIISVTDHKGVLRLIRSCGIEGFKNTRKGTNIAAQATAVTISGKAIELGW
KTVRVKVRGLGPGRMSAIKGLQMGGLNIVSITDNTHVSFNPPRPRKQRSL
ASFLDH

BO11712.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:36:09
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS11-PA 200 CG5184-PA 1..200 1..200 1019 100 Plus