Clone Sequence Records
BO11712.3prime Sequence
632 bp (631 high quality bases) assembled on 2006-04-19
> BO11712.3prime
ATGGTCTAGAAAGCTTGCAAGACTTCTCTGCTTTCGGGGTCTTGGAGGAT
TGAAGGAAACATGTGTGTTGTCGGTAATGGAAACGATGTTCAGCCCACCC
ATTTGCAGTCCTTTGATGGCCGACATTCTTCCAGGGCCAAGACCACGAAC
CTTTACTCGCACTGTCTTCCAGCCCAATTCAATGGCTTTTCCACTAATGG
TAACCGCTGTAGCTTGAGCTGCTATGTTGGTTCCCTTGCGAGTGTTTTTG
AATCCCTCAATTCCACAGGATCGTATCAGCCGGAGGACTCCTTTGTGATC
CGTGACGGAAATAATTGTGTTGTTGGGTGAAACGCGAATGTTGCAGATGG
GCAGCTCGTTGAAGGGTATTCCATTGAATAACGTGTTGGCGGTGCTGGCA
TCCGGGAAAAACTTAGCCTTGCGGTTGATAAGTGTGTCGATGTCCACGGT
CTTTTCGCCCACGGTTCCTTCGTCTTTGGCCGGTAAAGATGCCAGCATTT
CCTTGCGGTCCTCCGCCTTCCGCCAGCAAGCGCTCGTGTGTATCCTAGAA
GTCTGGAGCGGCACAGCGGGCATAGTAATACTCCGAAGAGCACTTAGAAA
TACACTTTTCAGTGACATGTCGACTGATAACT
BO11712.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:28:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5184-PA | 603 | mRpS11-RA | 1..600 | 618..19 | 3000 | 100 | Minus |
CG5184-PB | 276 | mRpS11-RB | 1..198 | 618..421 | 990 | 100 | Minus |
CG5184-PB | 276 | mRpS11-RB | 197..276 | 355..276 | 400 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 03:45:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS11-RA | 729 | CG5184-RA | 67..666 | 618..19 | 3000 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 03:45:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17072798..17072994 | 618..422 | 985 | 100 | Minus |
3R | 32079331 | 3R | 17073052..17073184 | 422..290 | 665 | 100 | Minus |
3R | 32079331 | 3R | 17073627..17073732 | 124..19 | 530 | 100 | Minus |
3R | 32079331 | 3R | 17073236..17073338 | 292..190 | 515 | 100 | Minus |
3R | 32079331 | 3R | 17073502..17073567 | 189..124 | 330 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 03:45:05 has no hits.
BO11712.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:14:24 Download gff for
BO11712.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5184-PA | 1..603 | 15..618 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:41:08 Download gff for
BO11712.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5184-PA | 1..603 | 15..618 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 07:57:58 Download gff for
BO11712.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS11-RA | 67..669 | 15..618 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 05:28:48 Download gff for
BO11712.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS11-RA | 67..669 | 15..618 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 05:28:48 Download gff for
BO11712.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17073238..17073338 | 190..290 | 100 | -> | Minus |
3R | 17073502..17073567 | 124..189 | 100 | -> | Minus |
3R | 17072798..17072994 | 422..618 | 100 | -> | Minus |
3R | 17073053..17073183 | 291..421 | 100 | -> | Minus |
3R | 17073628..17073735 | 15..123 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 07:57:58 Download gff for
BO11712.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12898520..12898716 | 422..618 | 100 | -> | Minus |
arm_3R | 12898775..12898905 | 291..421 | 100 | -> | Minus |
arm_3R | 12898960..12899060 | 190..290 | 100 | -> | Minus |
arm_3R | 12899224..12899289 | 124..189 | 100 | -> | Minus |
arm_3R | 12899350..12899457 | 15..123 | 98 | | Minus |
BO11712.5prime Sequence
632 bp (631 high quality bases) assembled on 2006-04-19
> BO11712.5prime
GAAGTTATCAGTCGACATGTCACTGAAAAGTGTATTTCTAAGTGCTCTTC
GGAGTATTACTATGCCCGCTGTGCCGCTCCAGACTTCTAGGATACACACG
AGCGCTTGCTGGCGGAAGGCGGAGGACCGCAAGGAAATGCTGGCATCTTT
ACCGGCCAAAGACGAAGGAACCGTGGGCGAAAAGACCGTGGACATCGACA
CACTTATCAACCGCAAGGCTAAGTTTTTCCCGGATGCCAGCACCGCCAAC
ACGTTATTCAATGGAATACCCTTCAACGAGCTGCCCATCTGCAACATTCG
CGTTTCACCCAACAACACAATTATTTCCGTCACGGATCACAAAGGAGTCC
TCCGGCTGATACGATCCTGTGGAATTGAGGGATTCAAAAACACTCGCAAG
GGAACCAACATAGCAGCTCAAGCTACAGCGGTTACCATTAGTGGAAAAGC
CATTGAATTGGGCTGGAAGACAGTGCGAGTAAAGGTTCGTGGTCTTGGCC
CTGGAAGAATGTCGGCCATCAAAGGACTGCAAATGGGTGGGCTGAACATC
GTTTCCATTACCGACAACACACATGTTTCCTTCAATCCTCCAAGACCCCG
AAAGCAGAGAAGTCTTGCAAGCTTTCTAGACC
BO11712.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:28:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5184-PA | 603 | mRpS11-RA | 1..600 | 17..616 | 3000 | 100 | Plus |
CG5184-PB | 276 | mRpS11-RB | 1..198 | 17..214 | 990 | 100 | Plus |
CG5184-PB | 276 | mRpS11-RB | 197..276 | 280..359 | 400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:26:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS11-RA | 729 | CG5184-RA | 67..666 | 17..616 | 3000 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:26:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17072798..17072994 | 17..213 | 985 | 100 | Plus |
3R | 32079331 | 3R | 17073052..17073184 | 213..345 | 665 | 100 | Plus |
3R | 32079331 | 3R | 17073627..17073732 | 511..616 | 530 | 100 | Plus |
3R | 32079331 | 3R | 17073236..17073338 | 343..445 | 515 | 100 | Plus |
3R | 32079331 | 3R | 17073502..17073567 | 446..511 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 13:26:18 has no hits.
BO11712.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:14:25 Download gff for
BO11712.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5184-PA | 1..603 | 17..620 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:41:09 Download gff for
BO11712.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5184-PA | 1..603 | 17..620 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:26:46 Download gff for
BO11712.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS11-RA | 67..669 | 17..620 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:19:29 Download gff for
BO11712.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS11-RA | 67..669 | 17..620 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 17:19:29 Download gff for
BO11712.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17072798..17072994 | 17..213 | 100 | -> | Plus |
3R | 17073053..17073183 | 214..344 | 100 | -> | Plus |
3R | 17073238..17073338 | 345..445 | 100 | -> | Plus |
3R | 17073502..17073567 | 446..511 | 100 | -> | Plus |
3R | 17073628..17073735 | 512..620 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:26:46 Download gff for
BO11712.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12898960..12899060 | 345..445 | 100 | -> | Plus |
arm_3R | 12899224..12899289 | 446..511 | 100 | -> | Plus |
arm_3R | 12899350..12899457 | 512..620 | 98 | | Plus |
arm_3R | 12898520..12898716 | 17..213 | 100 | -> | Plus |
arm_3R | 12898775..12898905 | 214..344 | 100 | -> | Plus |
BO11712.complete Sequence
634 bp assembled on 2006-10-11
GenBank Submission: FJ632162
> BO11712.complete
GAAGTTATCAGTCGACATGTCACTGAAAAGTGTATTTCTAAGTGCTCTTC
GGAGTATTACTATGCCCGCTGTGCCGCTCCAGACTTCTAGGATACACACG
AGCGCTTGCTGGCGGAAGGCGGAGGACCGCAAGGAAATGCTGGCATCTTT
ACCGGCCAAAGACGAAGGAACCGTGGGCGAAAAGACCGTGGACATCGACA
CACTTATCAACCGCAAGGCTAAGTTTTTCCCGGATGCCAGCACCGCCAAC
ACGTTATTCAATGGAATACCCTTCAACGAGCTGCCCATCTGCAACATTCG
CGTTTCACCCAACAACACAATTATTTCCGTCACGGATCACAAAGGAGTCC
TCCGGCTGATACGATCCTGTGGAATTGAGGGATTCAAAAACACTCGCAAG
GGAACCAACATAGCAGCTCAAGCTACAGCGGTTACCATTAGTGGAAAAGC
CATTGAATTGGGCTGGAAGACAGTGCGAGTAAAGGTTCGTGGTCTTGGCC
CTGGAAGAATGTCGGCCATCAAAGGACTGCAAATGGGTGGGCTGAACATC
GTTTCCATTACCGACAACACACATGTTTCCTTCAATCCTCCAAGACCCCG
AAAGCAGAGAAGTCTTGCAAGCTTTCTAGACCAT
BO11712.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:56:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS11-RA | 603 | CG5184-PA | 1..600 | 17..616 | 3000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:56:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS11-RA | 729 | CG5184-RA | 67..666 | 17..616 | 3000 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:55:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17072798..17072994 | 17..213 | 985 | 100 | Plus |
3R | 32079331 | 3R | 17073052..17073184 | 213..345 | 665 | 100 | Plus |
3R | 32079331 | 3R | 17073627..17073732 | 511..616 | 530 | 100 | Plus |
3R | 32079331 | 3R | 17073236..17073338 | 343..445 | 515 | 100 | Plus |
3R | 32079331 | 3R | 17073502..17073567 | 446..511 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:56:00 has no hits.
BO11712.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:44:46 Download gff for
BO11712.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS11-RA | 1..603 | 17..620 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:03:55 Download gff for
BO11712.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS11-RA | 68..670 | 17..620 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:05:16 Download gff for
BO11712.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS11-RA | 67..666 | 17..618 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:44:46 Download gff for
BO11712.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS11-RA | 68..670 | 17..620 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:34:33 Download gff for
BO11712.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS11-RA | 67..666 | 17..618 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:34:33 Download gff for
BO11712.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17072798..17072994 | 17..213 | 100 | -> | Plus |
3R | 17073053..17073183 | 214..344 | 100 | -> | Plus |
3R | 17073238..17073338 | 345..445 | 100 | -> | Plus |
3R | 17073502..17073567 | 446..511 | 100 | -> | Plus |
3R | 17073628..17073732 | 512..618 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:05:16 Download gff for
BO11712.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12898520..12898716 | 17..213 | 100 | -> | Plus |
arm_3R | 12898775..12898905 | 214..344 | 100 | -> | Plus |
arm_3R | 12898960..12899060 | 345..445 | 100 | -> | Plus |
arm_3R | 12899224..12899289 | 446..511 | 100 | -> | Plus |
arm_3R | 12899350..12899454 | 512..618 | 98 | | Plus |
BO11712.pep Sequence
Translation from 16 to 634
> BO11712.pep
MSLKSVFLSALRSITMPAVPLQTSRIHTSACWRKAEDRKEMLASLPAKDE
GTVGEKTVDIDTLINRKAKFFPDASTANTLFNGIPFNELPICNIRVSPNN
TIISVTDHKGVLRLIRSCGIEGFKNTRKGTNIAAQATAVTISGKAIELGW
KTVRVKVRGLGPGRMSAIKGLQMGGLNIVSITDNTHVSFNPPRPRKQRSL
ASFLDH
BO11712.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:36:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS11-PA | 200 | CG5184-PA | 1..200 | 1..200 | 1019 | 100 | Plus |