Clone Sequence Records
BO11713.3prime Sequence
886 bp (772 high quality bases) assembled on 2006-04-19
> BO11713.3prime
ATGGTCTAGAAAGCTTGCGAAGGTAATGGGCTTGGTTTTCTCGAACACCT
CGCGTGCCAAACTCCTCATGACCTTGCCGTTGGCGTTCTTGGGGAACTTG
TCCACGAAGATGACTCCGGCATTCAGCTGCTTGTAGTCCACCACCACCCG
CTGGGCCACGTGGTCGATGACCTTCTGGTCGGCGATCTCGGCGCCCTCCT
TCTTGATGATCAGGGCTCCGGCGGCGTCACCGTATCTCGCATCCCGCACG
CCTACCACGCACACGTGCTCCACCTCCGGGAGCTCGGCGATGATCTGCTC
AATCTCGTTGGGCCAGTAGTGCTTGGACTTGTACTTCAGCAGGTCCTTCT
TGCGGTCCACCAAGTACAGGTTGTTGTCCTCGTCGAAGTAGCCCAGGTCG
CCCAGGTTGATCCATCCATCCTGGAGGGTGGTGGCCGTGTCCTCCGGGTT
CGAGAGGTAGCCCTCCCACTTCAGGCCGATGTCGATGAGCACCTCGCCCG
TCTGATTCACGCCCAGCTGCTGGCCATCCTCGCCTTGGATCTTGATCCTC
ATGCCGGGCGCCAGTCTGCCTACAGAGCACTCCAGACTGTGGTCGATGTT
GATGGTCACCACTCCCGTCTCCGTGGTTCCGTACGAGAACATCACGTAGG
TCTTGGGCAGCAGCTCCTGGGCCCGCCGCAGTAGTGCCAGGGATATCCAT
CCTCCAATCACGAAGGCTATCTTCAGGGACTCCAGTTGCTCGCTGGTGGC
CAGTGGACTGGTGAAGAGCTCGTAGGCCTGCCATGGCGCCATTGCCAGGC
AGGTGACCTTGTACTTGCTGACCAGGTAGAGAGCCGTCTCGGCGCTAAAT
GTCCTCCTGGATATGATGCGAGTGAAGCCACATGTG
BO11713.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:28:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4563-PA | 1614 | CG4563-RA | 744..1611 | 886..19 | 4340 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:15:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4563-RA | 1766 | CG4563-RA | 779..1646 | 886..19 | 4340 | 100 | Minus |
| CG4830-RA | 1861 | CG4830-RA | 1257..1423 | 422..256 | 220 | 75.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:15:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24451204..24452071 | 19..886 | 4340 | 100 | Plus |
| 3R | 32079331 | 3R | 12208597..12208763 | 256..422 | 220 | 75.4 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:15:16 has no hits.
BO11713.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:14:26 Download gff for
BO11713.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4563-PA | 744..1614 | 15..886 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:41:11 Download gff for
BO11713.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4563-PA | 744..1614 | 15..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:38:28 Download gff for
BO11713.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4563-RA | 779..1649 | 15..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:47:25 Download gff for
BO11713.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4563-RA | 779..1649 | 15..886 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:47:25 Download gff for
BO11713.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24451201..24452071 | 15..886 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:38:28 Download gff for
BO11713.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20338724..20339594 | 15..886 | 99 | | Plus |
BO11713.5prime Sequence
929 bp (787 high quality bases) assembled on 2006-04-19
> BO11713.5prime
GAAGTTATCAGTCGACATGCCGACAAAGGCGGTTTTCCCCACCTTCTTCA
ACAAGGAGACCCAGGTCTGGAGTGGCCCGCCACGGCCCACGGTCTACGAC
CACAACACCTCGGTCGGTCAGATCGTGTTCAACTCCCTGAGGTGCTGGCC
CACCAATGTGATTCAGATCACCGACGACGACGGCACCGTGCTGACCAACG
CCGACATGCTGGCCTACGCCACCCGGATTGCCCTATTCTTTAAGAGCGAG
GGCTTGACCCAGGAGGACCGCGTCGGGATCATCGCCAACTCGAGCACCTT
CGTGATCCCCGTGGCCACCGCCTGCTTCTTCCAGGCCACGCCCTTCCACG
CCGTCAACTACTCCAGGGAGCCGGCCATCGTACAGGGTCTCTACTCGGTG
ACCAAACCCAAGATCATGTTCATCGACGGTCCGGACTACGACCGCATCAA
GGAGATCACCAAGGAGTGGTCTCCCAAGCTGATCACGCTCACGGGTAAAG
TGGAGGGCGTTACTAGCATCGAGGACCTCGTAAAGCCCCATCCCGCCGAG
AAGATCTATGTACCTGCTTCCCTGGCCACTGGTGGCGACCAGATCGCCGT
GGTCCTGTGCTCCTCCGGCACTGCTGGCTTGCCCAAGGCAGTTGCCCTCT
CCCACCGCCACATTGCATCCACCAACTCGCTGTGCATCAGTACCGATGTG
CTGTACACCAGTGCCACCATCGACTGGATGACCGGATTCTCGATTACCGT
AATGAATCTCACATGTGGCTTCACTCGCATCATATCCAGGAGGACATTTA
GCGCCGAGACGGCTCTCTACCTGGTCAGCAAGTACAAGGTCACCTGCCTG
GCAATGGCGCCATGGCAGGGCTACGAGCTCTTCACCAGTCCACTGGCCAC
CAGCGAGCAACTGGAGTCCCTGAAGATAG
BO11713.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:28:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4563-PA | 1614 | CG4563-RA | 1..913 | 17..929 | 4540 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:45:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4563-RA | 1766 | CG4563-RA | 36..948 | 17..929 | 4550 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:45:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24452394..24452790 | 561..165 | 1985 | 100 | Minus |
| 2R | 25286936 | 2R | 24451902..24452152 | 929..679 | 1240 | 99.6 | Minus |
| 2R | 25286936 | 2R | 24452856..24453005 | 166..17 | 750 | 100 | Minus |
| 2R | 25286936 | 2R | 24452210..24452327 | 679..562 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:45:08 has no hits.
BO11713.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:14:27 Download gff for
BO11713.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4563-PA | 1..913 | 17..929 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:41:12 Download gff for
BO11713.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4563-PA | 1..913 | 17..929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 11:13:22 Download gff for
BO11713.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4563-RA | 30..948 | 10..929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:10:27 Download gff for
BO11713.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4563-RA | 30..948 | 10..929 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:10:27 Download gff for
BO11713.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24451902..24452152 | 679..929 | 99 | <- | Minus |
| 2R | 24452211..24452327 | 562..678 | 100 | <- | Minus |
| 2R | 24452394..24452788 | 167..561 | 100 | <- | Minus |
| 2R | 24452856..24453011 | 10..166 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 11:13:22 Download gff for
BO11713.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20339425..20339675 | 679..929 | 99 | <- | Minus |
| arm_2R | 20339734..20339850 | 562..678 | 100 | <- | Minus |
| arm_2R | 20339917..20340311 | 167..561 | 100 | <- | Minus |
| arm_2R | 20340379..20340534 | 10..166 | 98 | | Minus |
BO11713.complete Sequence
1645 bp assembled on 2007-06-22
GenBank Submission: FJ632163
> BO11713.complete
GAAGTTATCAGTCGACATGCCGACAAAGGCGGTTTTCCCCACCTTCTTCA
ACAAGGAGACCCAGGTCTGGAGTGGCCCGCCACGGCCCACGGTCTACGAC
CACAACACCTCGGTCGGTCAGATCGTGTTCAACTCCCTGAGGTGCTGGCC
CACCAATGTGATTCAGATCACCGACGACGACGGCACCGTGCTGACCAACG
CCGACATGCTGGCCTACGCCACCCGGATTGCCCTATTCTTTAAGAGCGAG
GGCTTGACCCAGGAGGACCGCGTCGGGATCATCGCCAACTCGAGCACCTT
CGTGATCCCCGTGGCCACCGCCTGCTTCTTCCAGGCCACGCCCTTCCACG
CCGTCAACTACTCCAGGGAGCCGGCCATCGTACAGGGTCTCTACTCGGTG
ACCAAACCCAAGATCATGTTCATCGACGGTCCGGACTACGACCGCATCAA
GGAGATCACCAAGGAGTGGTCTCCCAAGCTGATCACGCTCACGGGTAAAG
TGGAGGGCGTTACTAGCATCGAGGACCTCGTAAAGCCCCATCCCGCCGAG
AAGATCTATGTACCTGCTTCCCTGGCCACTGGTGGCGACCAGATCGCCGT
GGTCCTGTGCTCCTCCGGCACTGCTGGCTTGCCCAAGGCAGTTGCCCTCT
CCCACCGCCACATTGCATCCACCAACTCGCTGTGCATCAGTACCGATGTG
CTGTACACCAGTGCCACCATCGACTGGATGACCGGATTCTCGATTACCGT
AATGAATCTCACATGTGGCTTCACTCGCATCATATCCAGGAGGACATTTA
GCGCCGAGACGGCTCTCTACCTGGTCAGCAAGTACAAGGTCACCTGCCTG
GCAATGGCGCCATGGCAGGCCTACGAGCTCTTCACCAGTCCACTGGCCAC
CAGCGAGCAACTGGAGTCCCTGAAGATAGCCTTCGTGATTGGAGGATGGA
TATCCCTGGCACTACTGCGGCGGGCCCAGGAGCTGCTGCCCAAGACCTAC
GTGATGTTCTCGTACGGAACCACGGAGACGGGAGTGGTGACCATCAACAT
CGACCACAGTCTGGAGTGCTCTGTAGGCAGACTGGCGCCCGGCATGAGGA
TCAAGATCCAAGGCGAGGATGGCCAGCAGCTGGGCGTGAATCAGACGGGC
GAGGTGCTCATCGACATCGGCCTGAAGTGGGAGGGCTACCTCTCGAACCC
GGAGGACACGGCCACCACCCTCCAGGATGGATGGATCAACCTGGGCGACC
TGGGCTACTTCGACGAGGACAACAACCTGTACTTGGTGGACCGCAAGAAG
GACCTGCTGAAGTACAAGTCCAAGCACTACTGGCCCAACGAGATTGAGCA
GATCATCGCCGAGCTCCCGGAGGTGGAGCACGTGTGCGTGGTAGGCGTGC
GGGATGCGAGATACGGTGACGCCGCCGGAGCCCTGATCATCAAGAAGGAG
GGCGCCGAGATCGCCGACCAGAAGGTCATCGACCACGTGGCCCAGCGGGT
GGTGGTGGACTACAAGCAGCTGAATGCCGGAGTCATCTTCGTGGACAAGT
TCCCCAAGAACGCCAACGGCAAGGTCATGAGGAGTTTGGCACGCGAGGTG
TTCGAGAAAACCAAGCCCATTACCTTCGCAAGCTTTCTAGACCAT
BO11713.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:47:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4563-RA | 1614 | CG4563-PA | 1..1611 | 17..1627 | 8055 | 100 | Plus |
| CG4830-RA | 1605 | CG4830-PA | 1202..1368 | 1224..1390 | 220 | 75.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:47:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4563-RA | 1766 | CG4563-RA | 36..1646 | 17..1627 | 8055 | 100 | Plus |
| CG4830-RA | 1861 | CG4830-RA | 1257..1423 | 1224..1390 | 220 | 75.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:46:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24451204..24452152 | 1627..679 | 4745 | 100 | Minus |
| 2R | 25286936 | 2R | 24452394..24452790 | 561..165 | 1985 | 100 | Minus |
| 2R | 25286936 | 2R | 24452856..24453005 | 166..17 | 750 | 100 | Minus |
| 2R | 25286936 | 2R | 24452210..24452327 | 679..562 | 590 | 100 | Minus |
| 3R | 32079331 | 3R | 12208597..12208763 | 1390..1224 | 220 | 75.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:46:59 has no hits.
BO11713.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:08:29 Download gff for
BO11713.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4563-RA | 1..1614 | 17..1631 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:25:11 Download gff for
BO11713.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4563-RA | 27..1646 | 10..1631 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:14 Download gff for
BO11713.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4563-RA | 36..1646 | 17..1629 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:08:29 Download gff for
BO11713.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4563-RA | 27..1646 | 10..1631 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:52:42 Download gff for
BO11713.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4563-RA | 36..1646 | 17..1629 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:52:42 Download gff for
BO11713.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24452394..24452788 | 167..561 | 100 | <- | Minus |
| 2R | 24452856..24453005 | 17..166 | 100 | | Minus |
| 2R | 24451202..24452152 | 679..1629 | 99 | <- | Minus |
| 2R | 24452211..24452327 | 562..678 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:14 Download gff for
BO11713.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20340379..20340528 | 17..166 | 100 | | Minus |
| arm_2R | 20338725..20339675 | 679..1629 | 99 | <- | Minus |
| arm_2R | 20339734..20339850 | 562..678 | 100 | <- | Minus |
| arm_2R | 20339917..20340311 | 167..561 | 100 | <- | Minus |
BO11713.pep Sequence
Translation from 16 to 1645
> BO11713.pep
MPTKAVFPTFFNKETQVWSGPPRPTVYDHNTSVGQIVFNSLRCWPTNVIQ
ITDDDGTVLTNADMLAYATRIALFFKSEGLTQEDRVGIIANSSTFVIPVA
TACFFQATPFHAVNYSREPAIVQGLYSVTKPKIMFIDGPDYDRIKEITKE
WSPKLITLTGKVEGVTSIEDLVKPHPAEKIYVPASLATGGDQIAVVLCSS
GTAGLPKAVALSHRHIASTNSLCISTDVLYTSATIDWMTGFSITVMNLTC
GFTRIISRRTFSAETALYLVSKYKVTCLAMAPWQAYELFTSPLATSEQLE
SLKIAFVIGGWISLALLRRAQELLPKTYVMFSYGTTETGVVTINIDHSLE
CSVGRLAPGMRIKIQGEDGQQLGVNQTGEVLIDIGLKWEGYLSNPEDTAT
TLQDGWINLGDLGYFDEDNNLYLVDRKKDLLKYKSKHYWPNEIEQIIAEL
PEVEHVCVVGVRDARYGDAAGALIIKKEGAEIADQKVIDHVAQRVVVDYK
QLNAGVIFVDKFPKNANGKVMRSLAREVFEKTKPITFASFLDH
BO11713.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:21:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4563-PA | 537 | CG4563-PA | 1..537 | 1..537 | 2786 | 100 | Plus |
| CG8834-PA | 535 | CG8834-PA | 2..527 | 5..529 | 1257 | 46.5 | Plus |
| CG4830-PA | 534 | CG4830-PA | 5..527 | 8..529 | 1140 | 42.3 | Plus |
| CG11453-PA | 539 | CG11453-PA | 6..525 | 9..527 | 1048 | 39.9 | Plus |
| CG11407-PA | 538 | CG11407-PA | 7..534 | 9..533 | 924 | 36.4 | Plus |
