Clone BO11715 Report

Search the DGRC for BO11715

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:117
Well:15
Vector:pDNR-Dual
Associated Gene/TranscriptCG13126-RA
Protein status:BO11715.pep: validated full length
Sequenced Size:1423

Clone Sequence Records

BO11715.3prime Sequence

802 bp (769 high quality bases) assembled on 2006-04-20

> BO11715.3prime
ATGGTCTAGAAAGCTTGCCGCCAAAACAGGTGGTTCCTCTGATTCGATTG
ATTCTTGTTTGATTTGCGGCTGTCCCAGCGACATAGGTAAACGATCACCC
CACCGACTCACTTTTGCACAAGAATAGGCAGACTTTCCGTGCTTGGACTT
CGTGAAGATAACCTCTTGGAGAGTGCCCTTTTCTGTGCAGAGCCGACAGA
TGGCATGCTTTGACCTTACCAAGGTGGGACGCACAATGCGCGGCCAGGAG
CTTGAGCTATCGGATTGGGAACCCTTCTTCAGGATGGCATAACTGTAGAG
GGAGGTGTGACGGTCTGCCAAGAAGTCGCTACCCAAACGCAGGGGAGCGT
AGGAGATGGGAAAATTGCAGGGCGTTCGATCGGCCAGATCCCGAAGTCGA
GGACAGACCAAATCATGCGGACATGGTGCCACAGTGTGACCTTCTTGTTC
CTGTTCCAACAAAAATTGCCTAGCCTCGTTGACTAACTCGCTGCCACGGC
GCGTTCCCTCCTCCACAATGACCAGGTAACCATCGCACTTCCGCCACAGA
TTCCGCAGCACATCCTCCCGCTGCTCTTTGTTCTCCAACTCAAAAAGCGT
ATGAGATATAATGACCAGATCATAATTGGTTTCGATGGCGGGCAGGAACT
GTCGATAAAATACATTGCGCAGGGCTATTTGCTTGTTCTCATGGCCATCG
CGCAGAATGAGCTCTGATATCTCATTCATCTCCCTGGACCTGTCCACGTT
GTAGTACTCGAATATGTGTTCGCGCCACAGTTCGCTGGCCACCCACATAC
CG

BO11715.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:28:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG13126-PA 1392 CG13126-RA 606..1389 802..19 3920 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:56:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG13126-RB 1989 CG13126-RB 694..1477 802..19 3920 100 Minus
CG13126-RA 1633 CG13126-RA 694..1477 802..19 3920 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:56:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9953110..9953488 424..802 1895 100 Plus
2L 23513712 2L 9952756..9953047 132..423 1460 100 Plus
2L 23513712 2L 9952584..9952698 19..133 575 100 Plus
Blast to na_te.dros performed on 2015-02-06 12:56:23 has no hits.

BO11715.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:14:30 Download gff for BO11715.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13126-PA 606..1392 18..802 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:41:17 Download gff for BO11715.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13126-PA 606..1392 18..802 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 07:05:45 Download gff for BO11715.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13126-RA 694..1477 19..802 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:45:15 Download gff for BO11715.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13126-RA 694..1477 19..802 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:45:15 Download gff for BO11715.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 9952584..9952698 19..133 100 <- Plus
2L 9952758..9953047 134..423 100 <- Plus
2L 9953110..9953488 424..802 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 07:05:45 Download gff for BO11715.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9952584..9952698 19..133 100 <- Plus
arm_2L 9952758..9953047 134..423 100 <- Plus
arm_2L 9953110..9953488 424..802 100   Plus

BO11715.5prime Sequence

834 bp (724 high quality bases) assembled on 2006-04-19

> BO11715.5prime
GAAGTTATCAGTCGACATGAATTTTTCACTGAATTTCACAACGAGAAATC
TAGTGCCACGACTGCACCGATTCACCAGCAAGATTGCAGTGGACGTTGAA
CCAGCTGTGGTCTCTGCCCTGGAACATGCCACACTGAAGCCCAGAAAACA
TCCCGGAGTAGTGAGACCCAATCATGTGGAACTGCCGAAACAATTGAATG
ATACGCTAAAGCGCATCGTGGGGGATCATCCCGTCAAAAAACTAATCCAC
GATGGCCAGCAGCTCAACGCCTATATCAAATCCCGCCATCCACCACCCAC
GCTGGAAGAGATTGAGAACAAGAAACGCATCGTTATCGAAGAGGTCAACA
CGAAGATGCCTCTGGATCGCCTAGCTACACTCGACGAAGACGAGGCGGAG
CGTTGGAGGCGCAAGCGGGAGCTGGAGATCAACAAGAGGCTGGGTCAGCG
TATCTACGCCTGGAAGCGAATAGAATATGGAGCATACGAGTCGCTTGTGT
ACGCCATAGCTCGTGGTGCCCAGGAGTACGCCGTGTTGAAGCGCGTTCTC
ACGGAGCTGGCGCAGCGGGATGAACAGTTTCGGCCACGAAGCTTCTTTGA
CTTCGGATCCGGCATTGGAACCGGTATGTGGGTGGCCAGCGAACTGTGGC
GCGAACACATATTCGAGTACTACAACGTGGACAGGTCCAGGGAGATGAAT
GAGATATCAGAGCTCATTCTGCGCGATGGCCATGAGAACAAGCAAATAGC
CCTGCGCAATGTATTTTATCGACAGTTCCTGCCCGCCATCGAAACCAATT
ATGATCTGGGCATTATATCTCATACGCTTTTTTG

BO11715.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:28:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG13126-PA 1392 CG13126-RA 1..816 17..832 4055 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 05:26:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG13126-RB 1989 CG13126-RB 89..904 17..832 4065 99.9 Plus
CG13126-RA 1633 CG13126-RA 89..904 17..832 4065 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 05:26:44
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9953278..9954093 832..17 4065 99.9 Minus
Blast to na_te.dros performed on 2015-02-04 05:26:46 has no hits.

BO11715.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:14:31 Download gff for BO11715.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13126-PA 1..817 17..834 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:41:18 Download gff for BO11715.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13126-PA 1..817 17..834 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 07:13:12 Download gff for BO11715.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13126-RA 89..905 17..834 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:45:17 Download gff for BO11715.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13126-RA 89..905 17..834 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:45:17 Download gff for BO11715.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 9953277..9954093 16..834 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 07:13:12 Download gff for BO11715.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9953277..9954093 16..834 99 -> Minus

BO11715.complete Sequence

1423 bp assembled on 2006-10-11

GenBank Submission: FJ632164

> BO11715.complete
GAAGTTATCAGTCGACATGAATTTTTCACTGAATTTCACAACGAGAAATC
TAGTGCCACGACTGCACCGATTCACCAGCAAGATTGCAGTGGACGTTGAA
CCAGCTGTGGTCTCTGCCCTGGAACATGCCACACTGAAGCCCAGAAAACA
TCCCGGAGTAGTGAGACCCAATCATGTGGAACTGCCGAAACAATTGAATG
ATACGCTAAAGCGCATCGTGGGGGATCATCCCGTCAAAAAACTAATCCAC
GATGGCCAGCAGCTCAACGCCTATATCAAATCCCGCCATCCACCACCCAC
GCTGGAAGAGATTGAGAACAAGAAACGCATCGTTATCGAAGAGGTCAACA
CGAAGATGCCTCTGGATCGCCTAGCTACACTCGACGAAGACGAGGCGGAG
CGTTGGAGGCGCAAGCGGGAGCTGGAGATCAACAAGAGGCTGGGTCAGCG
TATCTACGCCTGGAAGCGAATAGAATATGGAGCATACGAGTCGCTTGTGT
ACGCCATAGCTCGTGGTGCCCAGGAGTACGCCGTGTTGAAGCGCGTTCTC
ACGGAGCTGGCGCAGCGGGATGAACAGTTTCGGCCACGAAGCTTCTTTGA
CTTCGGATCCGGCATTGGAACCGGTATGTGGGTGGCCAGCGAACTGTGGC
GCGAACACATATTCGAGTACTACAACGTGGACAGGTCCAGGGAGATGAAT
GAGATATCAGAGCTCATTCTGCGCGATGGCCATGAGAACAAGCAAATAGC
CCTGCGCAATGTATTTTATCGACAGTTCCTGCCCGCCATCGAAACCAATT
ATGATCTGGTCATTATATCTCATACGCTTTTTGAGTTGGAGAACAAAGAG
CAGCGGGAGGATGTGCTGCGGAATCTGTGGCGGAAGTGCGATGGTTACCT
GGTCATTGTGGAGGAGGGAACGCGCCGTGGCAGCGAGTTAGTCAACGAGG
CTAGGCAATTTTTGTTGGAACAGGAACAAGAAGGTCACACTGTGGCACCA
TGTCCGCATGATTTGGTCTGTCCTCGACTTCGGGATCTGGCCGATCGAAC
GCCCTGCAATTTTCCCATCTCCTACGCTCCCCTGCGTTTGGGTAGCGACT
TCTTGGCAGACCGTCACACCTCCCTCTACAGTTATGCCATCCTGAAGAAG
GGTTCCCAATCCGATAGCTCAAGCTCCTGGCCGCGCATTGTGCGTCCCAC
CTTGGTAAGGTCAAAGCATGCCATCTGTCGGCTCTGCACAGAAAAGGGCA
CTCTCCAAGAGGTTATCTTCACGAAGTCCAAGCACGGAAAGTCTGCCTAT
TCTTGTGCAAAAGTGAGTCGGTGGGGTGATCGTTTACCTATGTCGCTGGG
ACAGCCGCAAATCAAACAAGAATCAATCGAATCAGAGGAACCACCTGTTT
TGGCGGCAAGCTTTCTAGACCAT

BO11715.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:36:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG13126-RB 1392 CG13126-PB 1..1389 17..1405 6945 100 Plus
CG13126-RA 1392 CG13126-PA 1..1389 17..1405 6945 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:36:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG13126-RB 1989 CG13126-RB 89..1477 17..1405 6945 100 Plus
CG13126-RA 1633 CG13126-RA 89..1477 17..1405 6945 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:36:18
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9953110..9954093 1000..17 4920 100 Minus
2L 23513712 2L 9952756..9953047 1292..1001 1460 100 Minus
2L 23513712 2L 9952584..9952698 1405..1291 575 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:36:19 has no hits.

BO11715.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:50:03 Download gff for BO11715.complete
Subject Subject Range Query Range Percent Splice Strand
CG13126-RA 1..1392 17..1406 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:05:09 Download gff for BO11715.complete
Subject Subject Range Query Range Percent Splice Strand
CG13126-RA 51..1439 17..1405 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:27:53 Download gff for BO11715.complete
Subject Subject Range Query Range Percent Splice Strand
CG13126-RA 89..1477 17..1407 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:50:03 Download gff for BO11715.complete
Subject Subject Range Query Range Percent Splice Strand
CG13126-RA 51..1439 17..1405 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:34:44 Download gff for BO11715.complete
Subject Subject Range Query Range Percent Splice Strand
CG13126-RA 89..1477 17..1407 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:34:44 Download gff for BO11715.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9952582..9952698 1291..1407 98 <- Minus
2L 9952758..9953047 1001..1290 100 <- Minus
2L 9953110..9954093 17..1000 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:27:53 Download gff for BO11715.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9952582..9952698 1291..1407 98 <- Minus
arm_2L 9952758..9953047 1001..1290 100 <- Minus
arm_2L 9953110..9954093 17..1000 100   Minus

BO11715.pep Sequence

Translation from 16 to 1423

> BO11715.pep
MNFSLNFTTRNLVPRLHRFTSKIAVDVEPAVVSALEHATLKPRKHPGVVR
PNHVELPKQLNDTLKRIVGDHPVKKLIHDGQQLNAYIKSRHPPPTLEEIE
NKKRIVIEEVNTKMPLDRLATLDEDEAERWRRKRELEINKRLGQRIYAWK
RIEYGAYESLVYAIARGAQEYAVLKRVLTELAQRDEQFRPRSFFDFGSGI
GTGMWVASELWREHIFEYYNVDRSREMNEISELILRDGHENKQIALRNVF
YRQFLPAIETNYDLVIISHTLFELENKEQREDVLRNLWRKCDGYLVIVEE
GTRRGSELVNEARQFLLEQEQEGHTVAPCPHDLVCPRLRDLADRTPCNFP
ISYAPLRLGSDFLADRHTSLYSYAILKKGSQSDSSSSWPRIVRPTLVRSK
HAICRLCTEKGTLQEVIFTKSKHGKSAYSCAKVSRWGDRLPMSLGQPQIK
QESIESEEPPVLAASFLDH

BO11715.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:48:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG13126-PB 463 CG13126-PB 1..463 1..463 2423 100 Plus
CG13126-PA 463 CG13126-PA 1..463 1..463 2423 100 Plus