Clone Sequence Records
BO11718.3prime Sequence
924 bp (818 high quality bases) assembled on 2006-04-19
> BO11718.3prime
ATGGTCTAGAAAGCTTGCGGGCTTAGTTGGCAGCTCCTTCAACGGAGTCT
TTTCGTCCTTGGCCTCGGGATCCTTGGGAGTTCCGGCCTTGTTCCACGGC
TGCTCGCTGCCCGATCCCAAGAAGACGAATACCAGGAATTCCAAGGCGAA
CAGCACGATGGTCACTCCGAAAATGATGCGCCAGGCGCCAATGTTTTGAT
TTCCCTTGGTGACGAAGCCCACGAAGAGGGGGACAACAATACCAGGTAGC
GTAGCCGCCGTGTTGGTCAGAGCCACCAGGGTGCCGGCGAAGTTCGGTGC
GATGTCGATGTGGTTGGACAGGAAGCCGGAGAACATGGAGCCCATGGCCA
CAATGCCCACGGACATGACAGACACCGCCTCATAGTGACGGCATCCGATG
TAGCAGAGGACCAGCAGACAAACTCCAGGGATCAGGGTGCAAATGGAGGT
GGCCGTCTTGCGGGCAACGGTGGTGGTGATCTTACCCTTGGCCTGCAGAC
TGTCGAGGAGCTTGCCCAGACAGATGCTGAAGATGATCATGGGGAAGTAG
GGCAGAGCACTGAGGGCTGCATTGCTGGCCACGTTGAACTTGAGCACCTG
CTTCATGTAGAAGGGAATCTCGATGAGGAACATATACCAGCCGAAGTTGC
TGCAGGTGTGGGCGATGAGAATGGCCCAGAAGGGCACGGAGGTGAAGACC
TTGCCCCATGGAACCGCCGGGTGGTGCTCCGTCTTCTGTTCGGTGCCCAG
CGAGCTGGTGATCATTTGGCGCTCCTCCAGACTGATGAAACGCTGCTTGT
TGGGGTTGTCCTGGACCAGAATGACCCACAGCAACATCCAGATGCAGCTA
AGTGCGCCCATGACATAGAAGACCGACTCCCAGCCCCATTGGGCGGAGCA
CACGCCGGCCAGGAGGATGGAAAG
BO11718.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:28:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4726-PA | 1539 | CG4726-RA | 631..1536 | 924..19 | 4530 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:46:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MFS3-RA | 2029 | CG4726-RA | 801..1706 | 924..19 | 4530 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:46:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1146034..1146477 | 924..481 | 2220 | 100 | Minus |
2L | 23513712 | 2L | 1146538..1146825 | 486..199 | 1440 | 100 | Minus |
2L | 23513712 | 2L | 1146893..1147072 | 198..19 | 900 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:46:25 has no hits.
BO11718.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:14:36 Download gff for
BO11718.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4726-PA | 631..1539 | 15..924 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:41:26 Download gff for
BO11718.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4726-PA | 631..1539 | 15..924 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:29:38 Download gff for
BO11718.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MFS3-RA | 801..1711 | 13..924 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:10:21 Download gff for
BO11718.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MFS3-RA | 801..1711 | 13..924 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:10:21 Download gff for
BO11718.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1146034..1146472 | 486..924 | 100 | -> | Minus |
2L | 1146539..1146825 | 199..485 | 100 | -> | Minus |
2L | 1146893..1147077 | 13..198 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:29:38 Download gff for
BO11718.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1146893..1147077 | 13..198 | 98 | | Minus |
arm_2L | 1146034..1146472 | 486..924 | 100 | -> | Minus |
arm_2L | 1146539..1146825 | 199..485 | 100 | -> | Minus |
BO11718.5prime Sequence
927 bp (833 high quality bases) assembled on 2006-04-19
> BO11718.5prime
GAAGTTATCAGTCGACATGACGGACGAAGTGCCCGCCAAAGGCAGCATAT
TGGGCAAACTCGTGCCCGCCCGCTATGTGCTGGCCCTCCTGGGGTCCATC
GGCATGGCCATTGTGTACGGCCTGAAGGTGAATCTCAGCGTGGCCATGGT
GGCCATGGTGAACCACACAGCCATTAAGGCCCACGGAGACGGCGGTGGAC
ATGGGGGACACGGCAGCGTCATCCTTTCGAACGCCTCCCAAGTGTCCCTG
GTGGAGGAATGCAACCCGCCGGGTGGTGCCTCCAATGTGACGGCTAAGGT
GGAGGACGGTCCCTTCGACTGGAGCGAGCCCCTGCAGGGAACCCTGCTGA
GCTGCTACTTCTGGGGCTATTTGGTCTCGCAGATTCCGCTGGCACACGTC
GCCGAGAACTTCTCCGCCAAGTGGGTGATGCTCTTCTCGGTGGCCATCAA
CGTCGTGTGCACGCTGCTAACGCCCGTCTTTACTGAATTGCATTACGGTG
GCCTGATTCTGATGCGAGTGCTTGAGGGCGTCGGCGGAGGAGCCTCCTTC
CCGGCCATGCACGTGATGATCGCCTCCTGGGCCCCTCCCACGGAGCGCAT
GGTCATGTCCACCATCATCTACGTGGGCACATCTGCGGGTACGGCTCTTT
CCATCCTCCTGGCCGGCGTGTGCTCCGCCCAATGGGGCTGGGAGTCGGTC
TTCTATGTCATGGGCGCACTTAGCTGCATCTGGATGTTGCTGTGGGTCAT
TCTGGTCCAGGACAACCCCAACAAGCAGCGTTTCATCAGTCTGGAGGAGC
GCCAAATGATCACCAGCTCGCTGGGCACCGAACAGAAGACGGAGCACCAC
CCGGCCGTTCCATGGGGCAAGGTCTTCACCTCCGTGCCTTTCTGGGCCAT
TCTCATCGCCCACACCTGCAGCAACTT
BO11718.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:28:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4726-PA | 1539 | CG4726-RA | 1..911 | 17..927 | 4505 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:49:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MFS3-RA | 2029 | CG4726-RA | 171..1081 | 17..927 | 4525 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:49:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1145444..1146314 | 57..927 | 4325 | 99.8 | Plus |
2L | 23513712 | 2L | 1143371..1143410 | 17..56 | 200 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:49:28 has no hits.
BO11718.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:14:37 Download gff for
BO11718.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4726-PA | 1..911 | 17..927 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:41:28 Download gff for
BO11718.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4726-PA | 1..911 | 17..927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 11:14:23 Download gff for
BO11718.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MFS3-RA | 171..1081 | 17..927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:25:38 Download gff for
BO11718.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MFS3-RA | 171..1081 | 17..927 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:25:38 Download gff for
BO11718.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1143371..1143410 | 17..56 | 100 | -> | Plus |
2L | 1145444..1146314 | 57..927 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 11:14:23 Download gff for
BO11718.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1143371..1143410 | 17..56 | 100 | -> | Plus |
arm_2L | 1145444..1146314 | 57..927 | 99 | | Plus |
BO11718.complete Sequence
1570 bp assembled on 2006-10-11
GenBank Submission: FJ632165
> BO11718.complete
GAAGTTATCAGTCGACATGACGGACGAAGTGCCCGCCAAAGGCAGCATAT
TGGGCAAACTCGTGCCCGCCCGCTATGTGCTGGCCCTCCTGGGGTCCATC
GGCATGGCCATTGTGTACGGCCTGAAGGTGAATCTCAGCGTGGCCATGGT
GGCCATGGTGAACCACACAGCCATTAAGGCCCACGGAGACGGCGGTGGAC
ATGGGGGACACGGCAGCGTCATCCTTTCGAACGCCTCCCAAGTGTCCCTG
GTGGAGGAATGCAACCCGCCGGGTGGTGCCTCCAATGTGACGGCTAAGGT
GGAGGACGGTCCCTTCGACTGGAGCGAGCCCCTGCAGGGAACCCTGCTGA
GCTGCTACTTCTGGGGCTATTTGGTCTCGCAGATTCCGCTGGCACACGTC
GCCGAGAACTTCTCCGCCAAGTGGGTGATGCTCTTCTCGGTGGCCATCAA
CGTCGTGTGCACGCTGCTAACGCCCGTCTTTACTGAATTGCATTACGGTG
GCCTGATTCTGATGCGAGTGCTTGAGGGCGTCGGCGGAGGAGCCTCCTTC
CCGGCCATGCACGTGATGATCGCCTCCTGGGCCCCTCCCACGGAGCGCAT
GGTCATGTCCACCATCATCTACGTGGGCACATCTGCGGGTACGGCTCTTT
CCATCCTCCTGGCCGGCGTGTGCTCCGCCCAATGGGGCTGGGAGTCGGTC
TTCTATGTCATGGGCGCACTTAGCTGCATCTGGATGTTGCTGTGGGTCAT
TCTGGTCCAGGACAACCCCAACAAGCAGCGTTTCATCAGTCTGGAGGAGC
GCCAAATGATCACCAGCTCGCTGGGCACCGAACAGAAGACGGAGCACCAC
CCGGCGGTTCCATGGGGCAAGGTCTTCACCTCCGTGCCCTTCTGGGCCAT
TCTCATCGCCCACACCTGCAGCAACTTCGGCTGGTATATGTTCCTCATCG
AGATTCCCTTCTACATGAAGCAGGTGCTCAAGTTCAACGTGGCCAGCAAT
GCAGCCCTCAGTGCTCTGCCCTACTTCCCCATGATCATCTTCAGCATCTG
TCTGGGCAAGCTCCTCGACAGTCTGCAGGCCAAGGGTAAGATCACCACCA
CCGTTGCCCGCAAGACGGCCACCTCCATTTGCACCCTGATCCCTGGAGTT
TGTCTGCTGGTCCTCTGCTACATCGGATGCCGTCACTATGAGGCGGTGTC
TGTCATGTCCGTGGGCATTGTGGCCATGGGCTCCATGTTCTCCGGCTTCC
TGTCCAACCACATCGACATCGCACCGAACTTCGCCGGCACCCTGGTGGCT
CTGACCAACACGGCGGCTACGCTACCTGGTATTGTTGTCCCCCTCTTCGT
GGGCTTCGTCACCAAGGGAAATCAAAACATTGGCGCCTGGCGCATCATTT
TCGGAGTGACCATCGTGCTGTTCGCCTTGGAATTCCTGGTATTCGTCTTC
TTGGGATCGGGCAGCGAGCAGCCGTGGAACAAGGCCGGAACTCCCAAGGA
TCCCGAGGCCAAGGACGAAAAGACTCCGTTGAAGGAGCTGCCAACTAAGC
CCGCAAGCTTTCTAGACCAT
BO11718.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:58:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MFS3-RA | 1539 | CG4726-PA | 1..1536 | 17..1552 | 7680 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:58:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MFS3-RA | 2029 | CG4726-RA | 171..1706 | 17..1552 | 7680 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:58:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1145444..1146477 | 57..1090 | 5170 | 100 | Plus |
2L | 23513712 | 2L | 1146538..1146825 | 1085..1372 | 1440 | 100 | Plus |
2L | 23513712 | 2L | 1146893..1147072 | 1373..1552 | 900 | 100 | Plus |
2L | 23513712 | 2L | 1143371..1143410 | 17..56 | 200 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:58:49 has no hits.
BO11718.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:50:04 Download gff for
BO11718.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4726-RA | 1..1539 | 17..1556 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:05:12 Download gff for
BO11718.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4726-RA | 169..1709 | 17..1558 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:03:46 Download gff for
BO11718.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MFS3-RA | 171..1706 | 17..1554 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:50:04 Download gff for
BO11718.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4726-RA | 169..1709 | 17..1558 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:16 Download gff for
BO11718.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MFS3-RA | 171..1706 | 17..1554 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:16 Download gff for
BO11718.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1146893..1147072 | 1373..1554 | 98 | | Plus |
2L | 1143371..1143410 | 17..56 | 100 | -> | Plus |
2L | 1145444..1146472 | 57..1085 | 100 | -> | Plus |
2L | 1146539..1146825 | 1086..1372 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:03:46 Download gff for
BO11718.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1143371..1143410 | 17..56 | 100 | -> | Plus |
arm_2L | 1145444..1146472 | 57..1085 | 100 | -> | Plus |
arm_2L | 1146539..1146825 | 1086..1372 | 100 | -> | Plus |
arm_2L | 1146893..1147072 | 1373..1554 | 98 | | Plus |
BO11718.pep Sequence
Translation from 16 to 1570
> BO11718.pep
MTDEVPAKGSILGKLVPARYVLALLGSIGMAIVYGLKVNLSVAMVAMVNH
TAIKAHGDGGGHGGHGSVILSNASQVSLVEECNPPGGASNVTAKVEDGPF
DWSEPLQGTLLSCYFWGYLVSQIPLAHVAENFSAKWVMLFSVAINVVCTL
LTPVFTELHYGGLILMRVLEGVGGGASFPAMHVMIASWAPPTERMVMSTI
IYVGTSAGTALSILLAGVCSAQWGWESVFYVMGALSCIWMLLWVILVQDN
PNKQRFISLEERQMITSSLGTEQKTEHHPAVPWGKVFTSVPFWAILIAHT
CSNFGWYMFLIEIPFYMKQVLKFNVASNAALSALPYFPMIIFSICLGKLL
DSLQAKGKITTTVARKTATSICTLIPGVCLLVLCYIGCRHYEAVSVMSVG
IVAMGSMFSGFLSNHIDIAPNFAGTLVALTNTAATLPGIVVPLFVGFVTK
GNQNIGAWRIIFGVTIVLFALEFLVFVFLGSGSEQPWNKAGTPKDPEAKD
EKTPLKELPTKPASFLDH
BO11718.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:47:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MFS3-PA | 512 | CG4726-PA | 1..512 | 1..512 | 2675 | 100 | Plus |
Picot-PD | 516 | CG8098-PD | 27..489 | 19..499 | 749 | 33.8 | Plus |
Picot-PC | 516 | CG8098-PC | 27..489 | 19..499 | 749 | 33.8 | Plus |
Picot-PA | 516 | CG8098-PA | 27..489 | 19..499 | 749 | 33.8 | Plus |
Picot-PB | 529 | CG8098-PB | 40..502 | 19..499 | 749 | 33.8 | Plus |