Clone BO11718 Report

Search the DGRC for BO11718

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:117
Well:18
Vector:pDNR-Dual
Associated Gene/TranscriptCG4726-RA
Protein status:BO11718.pep: validated full length
Sequenced Size:1570

Clone Sequence Records

BO11718.3prime Sequence

924 bp (818 high quality bases) assembled on 2006-04-19

> BO11718.3prime
ATGGTCTAGAAAGCTTGCGGGCTTAGTTGGCAGCTCCTTCAACGGAGTCT
TTTCGTCCTTGGCCTCGGGATCCTTGGGAGTTCCGGCCTTGTTCCACGGC
TGCTCGCTGCCCGATCCCAAGAAGACGAATACCAGGAATTCCAAGGCGAA
CAGCACGATGGTCACTCCGAAAATGATGCGCCAGGCGCCAATGTTTTGAT
TTCCCTTGGTGACGAAGCCCACGAAGAGGGGGACAACAATACCAGGTAGC
GTAGCCGCCGTGTTGGTCAGAGCCACCAGGGTGCCGGCGAAGTTCGGTGC
GATGTCGATGTGGTTGGACAGGAAGCCGGAGAACATGGAGCCCATGGCCA
CAATGCCCACGGACATGACAGACACCGCCTCATAGTGACGGCATCCGATG
TAGCAGAGGACCAGCAGACAAACTCCAGGGATCAGGGTGCAAATGGAGGT
GGCCGTCTTGCGGGCAACGGTGGTGGTGATCTTACCCTTGGCCTGCAGAC
TGTCGAGGAGCTTGCCCAGACAGATGCTGAAGATGATCATGGGGAAGTAG
GGCAGAGCACTGAGGGCTGCATTGCTGGCCACGTTGAACTTGAGCACCTG
CTTCATGTAGAAGGGAATCTCGATGAGGAACATATACCAGCCGAAGTTGC
TGCAGGTGTGGGCGATGAGAATGGCCCAGAAGGGCACGGAGGTGAAGACC
TTGCCCCATGGAACCGCCGGGTGGTGCTCCGTCTTCTGTTCGGTGCCCAG
CGAGCTGGTGATCATTTGGCGCTCCTCCAGACTGATGAAACGCTGCTTGT
TGGGGTTGTCCTGGACCAGAATGACCCACAGCAACATCCAGATGCAGCTA
AGTGCGCCCATGACATAGAAGACCGACTCCCAGCCCCATTGGGCGGAGCA
CACGCCGGCCAGGAGGATGGAAAG

BO11718.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:28:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG4726-PA 1539 CG4726-RA 631..1536 924..19 4530 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:46:28
Subject Length Description Subject Range Query Range Score Percent Strand
MFS3-RA 2029 CG4726-RA 801..1706 924..19 4530 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:46:20
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1146034..1146477 924..481 2220 100 Minus
2L 23513712 2L 1146538..1146825 486..199 1440 100 Minus
2L 23513712 2L 1146893..1147072 198..19 900 100 Minus
Blast to na_te.dros performed on 2015-02-12 11:46:25 has no hits.

BO11718.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:14:36 Download gff for BO11718.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4726-PA 631..1539 15..924 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:41:26 Download gff for BO11718.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4726-PA 631..1539 15..924 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:29:38 Download gff for BO11718.3prime
Subject Subject Range Query Range Percent Splice Strand
MFS3-RA 801..1711 13..924 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:10:21 Download gff for BO11718.3prime
Subject Subject Range Query Range Percent Splice Strand
MFS3-RA 801..1711 13..924 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:10:21 Download gff for BO11718.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 1146034..1146472 486..924 100 -> Minus
2L 1146539..1146825 199..485 100 -> Minus
2L 1146893..1147077 13..198 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:29:38 Download gff for BO11718.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1146893..1147077 13..198 98   Minus
arm_2L 1146034..1146472 486..924 100 -> Minus
arm_2L 1146539..1146825 199..485 100 -> Minus

BO11718.5prime Sequence

927 bp (833 high quality bases) assembled on 2006-04-19

> BO11718.5prime
GAAGTTATCAGTCGACATGACGGACGAAGTGCCCGCCAAAGGCAGCATAT
TGGGCAAACTCGTGCCCGCCCGCTATGTGCTGGCCCTCCTGGGGTCCATC
GGCATGGCCATTGTGTACGGCCTGAAGGTGAATCTCAGCGTGGCCATGGT
GGCCATGGTGAACCACACAGCCATTAAGGCCCACGGAGACGGCGGTGGAC
ATGGGGGACACGGCAGCGTCATCCTTTCGAACGCCTCCCAAGTGTCCCTG
GTGGAGGAATGCAACCCGCCGGGTGGTGCCTCCAATGTGACGGCTAAGGT
GGAGGACGGTCCCTTCGACTGGAGCGAGCCCCTGCAGGGAACCCTGCTGA
GCTGCTACTTCTGGGGCTATTTGGTCTCGCAGATTCCGCTGGCACACGTC
GCCGAGAACTTCTCCGCCAAGTGGGTGATGCTCTTCTCGGTGGCCATCAA
CGTCGTGTGCACGCTGCTAACGCCCGTCTTTACTGAATTGCATTACGGTG
GCCTGATTCTGATGCGAGTGCTTGAGGGCGTCGGCGGAGGAGCCTCCTTC
CCGGCCATGCACGTGATGATCGCCTCCTGGGCCCCTCCCACGGAGCGCAT
GGTCATGTCCACCATCATCTACGTGGGCACATCTGCGGGTACGGCTCTTT
CCATCCTCCTGGCCGGCGTGTGCTCCGCCCAATGGGGCTGGGAGTCGGTC
TTCTATGTCATGGGCGCACTTAGCTGCATCTGGATGTTGCTGTGGGTCAT
TCTGGTCCAGGACAACCCCAACAAGCAGCGTTTCATCAGTCTGGAGGAGC
GCCAAATGATCACCAGCTCGCTGGGCACCGAACAGAAGACGGAGCACCAC
CCGGCCGTTCCATGGGGCAAGGTCTTCACCTCCGTGCCTTTCTGGGCCAT
TCTCATCGCCCACACCTGCAGCAACTT

BO11718.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:28:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG4726-PA 1539 CG4726-RA 1..911 17..927 4505 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:49:31
Subject Length Description Subject Range Query Range Score Percent Strand
MFS3-RA 2029 CG4726-RA 171..1081 17..927 4525 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:49:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1145444..1146314 57..927 4325 99.8 Plus
2L 23513712 2L 1143371..1143410 17..56 200 100 Plus
Blast to na_te.dros performed on 2015-02-13 01:49:28 has no hits.

BO11718.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:14:37 Download gff for BO11718.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4726-PA 1..911 17..927 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:41:28 Download gff for BO11718.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4726-PA 1..911 17..927 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 11:14:23 Download gff for BO11718.5prime
Subject Subject Range Query Range Percent Splice Strand
MFS3-RA 171..1081 17..927 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:25:38 Download gff for BO11718.5prime
Subject Subject Range Query Range Percent Splice Strand
MFS3-RA 171..1081 17..927 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:25:38 Download gff for BO11718.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 1143371..1143410 17..56 100 -> Plus
2L 1145444..1146314 57..927 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 11:14:23 Download gff for BO11718.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1143371..1143410 17..56 100 -> Plus
arm_2L 1145444..1146314 57..927 99   Plus

BO11718.complete Sequence

1570 bp assembled on 2006-10-11

GenBank Submission: FJ632165

> BO11718.complete
GAAGTTATCAGTCGACATGACGGACGAAGTGCCCGCCAAAGGCAGCATAT
TGGGCAAACTCGTGCCCGCCCGCTATGTGCTGGCCCTCCTGGGGTCCATC
GGCATGGCCATTGTGTACGGCCTGAAGGTGAATCTCAGCGTGGCCATGGT
GGCCATGGTGAACCACACAGCCATTAAGGCCCACGGAGACGGCGGTGGAC
ATGGGGGACACGGCAGCGTCATCCTTTCGAACGCCTCCCAAGTGTCCCTG
GTGGAGGAATGCAACCCGCCGGGTGGTGCCTCCAATGTGACGGCTAAGGT
GGAGGACGGTCCCTTCGACTGGAGCGAGCCCCTGCAGGGAACCCTGCTGA
GCTGCTACTTCTGGGGCTATTTGGTCTCGCAGATTCCGCTGGCACACGTC
GCCGAGAACTTCTCCGCCAAGTGGGTGATGCTCTTCTCGGTGGCCATCAA
CGTCGTGTGCACGCTGCTAACGCCCGTCTTTACTGAATTGCATTACGGTG
GCCTGATTCTGATGCGAGTGCTTGAGGGCGTCGGCGGAGGAGCCTCCTTC
CCGGCCATGCACGTGATGATCGCCTCCTGGGCCCCTCCCACGGAGCGCAT
GGTCATGTCCACCATCATCTACGTGGGCACATCTGCGGGTACGGCTCTTT
CCATCCTCCTGGCCGGCGTGTGCTCCGCCCAATGGGGCTGGGAGTCGGTC
TTCTATGTCATGGGCGCACTTAGCTGCATCTGGATGTTGCTGTGGGTCAT
TCTGGTCCAGGACAACCCCAACAAGCAGCGTTTCATCAGTCTGGAGGAGC
GCCAAATGATCACCAGCTCGCTGGGCACCGAACAGAAGACGGAGCACCAC
CCGGCGGTTCCATGGGGCAAGGTCTTCACCTCCGTGCCCTTCTGGGCCAT
TCTCATCGCCCACACCTGCAGCAACTTCGGCTGGTATATGTTCCTCATCG
AGATTCCCTTCTACATGAAGCAGGTGCTCAAGTTCAACGTGGCCAGCAAT
GCAGCCCTCAGTGCTCTGCCCTACTTCCCCATGATCATCTTCAGCATCTG
TCTGGGCAAGCTCCTCGACAGTCTGCAGGCCAAGGGTAAGATCACCACCA
CCGTTGCCCGCAAGACGGCCACCTCCATTTGCACCCTGATCCCTGGAGTT
TGTCTGCTGGTCCTCTGCTACATCGGATGCCGTCACTATGAGGCGGTGTC
TGTCATGTCCGTGGGCATTGTGGCCATGGGCTCCATGTTCTCCGGCTTCC
TGTCCAACCACATCGACATCGCACCGAACTTCGCCGGCACCCTGGTGGCT
CTGACCAACACGGCGGCTACGCTACCTGGTATTGTTGTCCCCCTCTTCGT
GGGCTTCGTCACCAAGGGAAATCAAAACATTGGCGCCTGGCGCATCATTT
TCGGAGTGACCATCGTGCTGTTCGCCTTGGAATTCCTGGTATTCGTCTTC
TTGGGATCGGGCAGCGAGCAGCCGTGGAACAAGGCCGGAACTCCCAAGGA
TCCCGAGGCCAAGGACGAAAAGACTCCGTTGAAGGAGCTGCCAACTAAGC
CCGCAAGCTTTCTAGACCAT

BO11718.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:58:50
Subject Length Description Subject Range Query Range Score Percent Strand
MFS3-RA 1539 CG4726-PA 1..1536 17..1552 7680 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:58:51
Subject Length Description Subject Range Query Range Score Percent Strand
MFS3-RA 2029 CG4726-RA 171..1706 17..1552 7680 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:58:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1145444..1146477 57..1090 5170 100 Plus
2L 23513712 2L 1146538..1146825 1085..1372 1440 100 Plus
2L 23513712 2L 1146893..1147072 1373..1552 900 100 Plus
2L 23513712 2L 1143371..1143410 17..56 200 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:58:49 has no hits.

BO11718.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:50:04 Download gff for BO11718.complete
Subject Subject Range Query Range Percent Splice Strand
CG4726-RA 1..1539 17..1556 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:05:12 Download gff for BO11718.complete
Subject Subject Range Query Range Percent Splice Strand
CG4726-RA 169..1709 17..1558 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:03:46 Download gff for BO11718.complete
Subject Subject Range Query Range Percent Splice Strand
MFS3-RA 171..1706 17..1554 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:50:04 Download gff for BO11718.complete
Subject Subject Range Query Range Percent Splice Strand
CG4726-RA 169..1709 17..1558 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:16 Download gff for BO11718.complete
Subject Subject Range Query Range Percent Splice Strand
MFS3-RA 171..1706 17..1554 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:16 Download gff for BO11718.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1146893..1147072 1373..1554 98   Plus
2L 1143371..1143410 17..56 100 -> Plus
2L 1145444..1146472 57..1085 100 -> Plus
2L 1146539..1146825 1086..1372 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:03:46 Download gff for BO11718.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1143371..1143410 17..56 100 -> Plus
arm_2L 1145444..1146472 57..1085 100 -> Plus
arm_2L 1146539..1146825 1086..1372 100 -> Plus
arm_2L 1146893..1147072 1373..1554 98   Plus

BO11718.pep Sequence

Translation from 16 to 1570

> BO11718.pep
MTDEVPAKGSILGKLVPARYVLALLGSIGMAIVYGLKVNLSVAMVAMVNH
TAIKAHGDGGGHGGHGSVILSNASQVSLVEECNPPGGASNVTAKVEDGPF
DWSEPLQGTLLSCYFWGYLVSQIPLAHVAENFSAKWVMLFSVAINVVCTL
LTPVFTELHYGGLILMRVLEGVGGGASFPAMHVMIASWAPPTERMVMSTI
IYVGTSAGTALSILLAGVCSAQWGWESVFYVMGALSCIWMLLWVILVQDN
PNKQRFISLEERQMITSSLGTEQKTEHHPAVPWGKVFTSVPFWAILIAHT
CSNFGWYMFLIEIPFYMKQVLKFNVASNAALSALPYFPMIIFSICLGKLL
DSLQAKGKITTTVARKTATSICTLIPGVCLLVLCYIGCRHYEAVSVMSVG
IVAMGSMFSGFLSNHIDIAPNFAGTLVALTNTAATLPGIVVPLFVGFVTK
GNQNIGAWRIIFGVTIVLFALEFLVFVFLGSGSEQPWNKAGTPKDPEAKD
EKTPLKELPTKPASFLDH

BO11718.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:47:58
Subject Length Description Subject Range Query Range Score Percent Strand
MFS3-PA 512 CG4726-PA 1..512 1..512 2675 100 Plus
Picot-PD 516 CG8098-PD 27..489 19..499 749 33.8 Plus
Picot-PC 516 CG8098-PC 27..489 19..499 749 33.8 Plus
Picot-PA 516 CG8098-PA 27..489 19..499 749 33.8 Plus
Picot-PB 529 CG8098-PB 40..502 19..499 749 33.8 Plus