Clone Sequence Records
BO11720.3prime Sequence
922 bp (828 high quality bases) assembled on 2006-04-20
> BO11720.3prime
ATGGTCTAGAAAGCTTGCCACCTCAATACTGTTCAGACTGCCCGACGATA
TGTTGTCCGTGTGGCTGCCCAGGCGCGTCCTCTTGATCATCGCCCTGCTC
GGCATCGGCGATCTCTGGACCCTAGGGCTCCCTGGCACGATGGGTATGCC
CACCAGGCCACCCGGATGGCCGGGGTGGTGGTGCAGATGCTGGTGGTGCG
GCGGCAGGTTGTTGTTGTTGTTGTTGTGGTGGCTCAGGCCAATATTGAGA
TTGCTGTGGCTGTTGTGCACCTGCTGGTTGCCCGAGGTGCGTCGCTGTCG
CCGCAGGGATGGTATCCTGGTCGGCGTGGGTGTGCCCTCCTCCATATGAA
AGCCCCCGGGCTGCTGGTGACCCCTGACACTGCGCTCCATCATCGGCGAC
GGCTGGTGCGTGGGTGCCTGTTGGTAATAGGCCGAGTGCGGAGGCACCGG
CGGCGGCTGCTGGTGGTAGTCCAGTCGCTTGTGCATCAGAGTGGGCGTGC
CAGGCGGATGGTACGGCTGTGCGTGGTGAAGGCCATTCTGATGCAGTCCA
GAGTTGTTCTTATCGGATGCCGTTTCCTGGGCCAGCGGATTGGGCGTAAT
ATTCATCCTCGGAATCACTCCGTTGAGGCGCCTTACATCGCCACTTTTGT
GGTGGCCACCAACTCCCAGGACGGCGGAGGTAACAAAGTCCGCTTGAATG
TGTTCCAATTGCGGTTTGTTCTCATCCTCCGGCTGAGAGTTTTCCCGTCT
CTTTAGGCAAAGGCAGACCACCAATGAGGCGATGAGGAGTAGTATGCCTC
CGCCAGCGGCACCTGCGATCAGTGGATATAAGGAGTTCTGGTGCTGTTCC
ACTGCCTTATTGGCTGGCACTGGCGTGGCCGAAGATGAAGCCCGTTGCTC
GTGCGTTTTTCTGGTCCTCGCT
BO11720.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:29:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32796-PB | 2997 | CG32796-RB | 2091..2994 | 922..19 | 4495 | 99.8 | Minus |
| CG32796-PA | 1644 | CG32796-RA | 738..1641 | 922..19 | 4495 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:48:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| boi-RF | 4509 | CG32796-RF | 2719..3622 | 922..19 | 4505 | 99.9 | Minus |
| boi-RE | 4316 | CG32796-RE | 2526..3429 | 922..19 | 4505 | 99.9 | Minus |
| boi-RA | 2721 | CG32796-RA | 931..1834 | 922..19 | 4505 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:48:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2445054..2445595 | 19..560 | 2710 | 100 | Plus |
| X | 23542271 | X | 2446642..2446824 | 726..908 | 900 | 99.5 | Plus |
| X | 23542271 | X | 2446411..2446578 | 559..726 | 840 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 07:48:26 has no hits.
BO11720.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:14:40 Download gff for
BO11720.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32796-PB | 2091..2997 | 16..922 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:41:32 Download gff for
BO11720.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32796-PA | 738..1644 | 16..922 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:34:25 Download gff for
BO11720.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| boi-RA | 927..1830 | 19..922 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:49:19 Download gff for
BO11720.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| boi-RA | 931..1834 | 19..922 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:49:19 Download gff for
BO11720.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2445054..2445593 | 19..558 | 100 | <- | Plus |
| X | 2446411..2446577 | 559..725 | 100 | <- | Plus |
| X | 2446642..2446824 | 726..908 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:34:25 Download gff for
BO11720.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2339087..2339626 | 19..558 | 100 | <- | Plus |
| arm_X | 2340444..2340610 | 559..725 | 100 | <- | Plus |
| arm_X | 2340675..2340857 | 726..908 | 99 | <- | Plus |
BO11720.5prime Sequence
876 bp (762 high quality bases) assembled on 2006-04-19
> BO11720.5prime
GAAGTTATCAGTCGACATGATCTGGTCTGGCAACGCCAGATATTCAAATG
TTCAGAATTCGAGCATGGTGCCTCCGTCACGACCCAATGTCACCCGTCTG
TCGGACGAGTCCGTGATGCTGCGCTGGAGTGTGCCACAAAACTCTGGACT
CCAGATCACCTTTTTCAAGGTGCAGTATCGCATGTTGGGCGACGGAAAAA
ATCGGAGGAAGAACTGGCAGACGACCAGCGACAATATCCCGTACGGAAAC
GCGCACGGATCCGGGCCTGGCCAGGGGAACAGTCACTGGCGGGCGCGGAA
CCGGGACAGGGAGTATGAAATGGGCAATCCGCCCAAGAACTTCACCTCCT
CCGTTACGGGACTGACCGCCGGCAAGTACTACCGCTTCCGGATCGTGGCG
GTGTACTCCAATAACGACAACAAGGAGGGCAACACCTCCCTCAAGTTCTT
CCTGCAGAATGGAACGTCCAAGTCGAATCTGCCAGTGCCGGAACTACGCG
AGGTGGAGACGCTTTCCGAGTCGGCCGTGGTGCTCCATTGGTCCCTGGTA
TCCTCGACTCAAAATGAGGATATAGACGGGTACTATGCCTACTATAGGCC
AGCGGACTCAGCAGCGGAGTATTTGAAGGCCACGGTGGATGGCGGAATGA
GCAGGAGCTTCAAGATAGACCTCCTTCGTCCAGGAACCCCTTATGAGTTC
AAATTGCAATCGTTCAACTCCGACGCAGCCTCTGAATTCAGTGCTATTCG
GCAAGCGAGGACCAGAAAAACGCACGAGCAACCGGCTTCATCTTCGGCCA
CGCCAGTGCCAGCCAATAAGGCAGTGGAACAGCACCAGAACTCCTTATAT
CCACTGATCGCAGGTGCCGCTGGCGG
BO11720.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:29:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32796-PA | 1644 | CG32796-RA | 1..860 | 17..876 | 4300 | 100 | Plus |
| CG32796-PB | 2997 | CG32796-RB | 1397..2213 | 60..876 | 4085 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:22:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| boi-RA | 2721 | CG32796-RA | 194..1053 | 17..876 | 4300 | 100 | Plus |
| boi-RG | 4544 | CG32796-RG | 1739..2555 | 60..876 | 4085 | 100 | Plus |
| boi-RF | 4509 | CG32796-RF | 2025..2841 | 60..876 | 4085 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:22:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2446890..2447597 | 767..60 | 3540 | 100 | Minus |
| X | 23542271 | X | 2446716..2446824 | 876..768 | 545 | 100 | Minus |
| X | 23542271 | X | 2447657..2447699 | 59..17 | 215 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 13:22:32 has no hits.
BO11720.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:14:41 Download gff for
BO11720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32796-PA | 1..860 | 17..876 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:41:34 Download gff for
BO11720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32796-PA | 1..860 | 17..876 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:26:17 Download gff for
BO11720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| boi-RA | 183..1049 | 6..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:07:32 Download gff for
BO11720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| boi-RA | 187..1053 | 6..876 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 17:07:32 Download gff for
BO11720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2446716..2446824 | 768..876 | 100 | <- | Minus |
| X | 2446890..2447597 | 60..767 | 100 | <- | Minus |
| X | 2447657..2447706 | 6..59 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:26:17 Download gff for
BO11720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2340749..2340857 | 768..876 | 100 | <- | Minus |
| arm_X | 2340923..2341630 | 60..767 | 100 | <- | Minus |
| arm_X | 2341690..2341739 | 6..59 | 92 | | Minus |
BO11720.complete Sequence
1675 bp assembled on 2006-10-11
GenBank Submission: FJ632167
> BO11720.complete
GAAGTTATCAGTCGACATGATCTGGTCTGGCAACGCCAGATATTCAAATG
TTCAGAATTCGAGCATGGTGCCTCCGTCACGACCCAATGTCACCCGTCTG
TCGGACGAGTCCGTGATGCTGCGCTGGAGTGTGCCACAAAACTCTGGACT
CCAGATCACCTTTTTCAAGGTGCAGTATCGCATGTTGGGCGACGGAAAAA
ATCGGAGGAAGAACTGGCAGACGACCAGCGACAATATCCCGTACGGAAAC
GCGCACGGATCCGGGCCTGGCCAGGGGAACAGTCACTGGCGGGCGCGGAA
CCGGGACAGGGAGTATGAAATGGGCAATCCGCCCAAGAACTTCACCTCCT
CCGTTACGGGACTGACCGCCGGCAAGTACTACCGCTTCCGGATCGTGGCG
GTGTACTCCAATAACGACAACAAGGAGGGCAACACCTCCCTCAAGTTCTT
CCTGCAGAATGGAACGTCCAAGTCGAATCTGCCAGTGCCGGAACTACGCG
AGGTGGAGACGCTTTCCGAGTCGGCCGTGGTGCTCCATTGGTCCCTGGTA
TCCTCGACTCAAAATGAGGATATAGACGGGTACTATGCCTACTATAGGCC
AGCGGACTCAGCAGCGGAGTATTTGAAGGCCACGGTGGATGGCGGAATGA
GCAGGAGCTTCAAGATAGACCTCCTTCGTCCAGGAACCCCTTATGAGTTC
AAATTGCAATCGTTCAACTCCGACGCAGCCTCTGAATTCAGTGCTATTCG
GCAAGCGAGGACCAGAAAAACGCACGAGCAACCGGCTTCATCTTCGGCCA
CGCCAGTGCCAGCCAATAAGGCAGTGGAACAGCACCAGAACTCCTTATAT
CCACTGATCGCAGGTGCCGCTGGCGGAGGCATACTACTCCTCATCGCCTC
ATTGGTGGTCTGCCTTTGCCTAAAGAGACGGGAAAACTCTCAGCCGGAGG
ATGAGAACAAACCGCAATTGGAACACATTCAAGCGGACTTTGTTACCTCC
GCCGTCCTGGGAGTTGGTGGCCACCACAAAAGTGGCGATGTAAGGCGCCT
CAACGGAGTGATTCCGAGGATGAATATTACGCCCAATCCGCTGGCCCAGG
AAACGGCATCCGATAAGAACAACTCTGGACTGCATCAGAATGGCCTTCAC
CACGCACAGCCGTACCATCCGCCTGGCACGCCCACTCTGATGCACAAGCG
ACTGGACTACCACCAGCAGCCGCCGCCGGTGCCTCCGCACTCGGCCTATT
ACCAACAGGCACCCACGCACCAGCCGTCGCCGATGATGGAGCGCAGTGTC
AGGGGTCACCAGCAGCCCGGGGGCTTTCATATGGAGGAGGGCACACCCAC
GCCGACCAGGATACCATCCCTGCGGCGACAGCGACGCACCTCGGGCAACC
AGCAGGTGCACAACAGCCACAGCAATCTCAATATTGGCCTGAGCCACCAC
AACAACAACAACAACAACCTGCCGCCGCACCACCAGCATCTGCACCACCA
CCCCGGCCATCCGGGTGGCCTGGTGGGCATACCCATCGTGCCAGGGAGCC
CTAGGGTCCAGAGATCGCCGATGCCGAGCAGGGCGATGATCAAGAGGACG
CGCCTGGGCAGCCACACGGACAACATATCGTCGGGCAGTCTGAACAGTAT
TGAGGTGGCAAGCTTTCTAGACCAT
BO11720.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:59:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| boi-RA | 1644 | CG32796-PA | 1..1641 | 17..1657 | 8205 | 100 | Plus |
| boi-RF | 2997 | CG32796-PF | 1397..2994 | 60..1657 | 7990 | 100 | Plus |
| boi-RE | 2997 | CG32796-PE | 1397..2994 | 60..1657 | 7990 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:59:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| boi-RA | 2721 | CG32796-RA | 194..1834 | 17..1657 | 8205 | 100 | Plus |
| boi-RF | 4509 | CG32796-RF | 2025..3622 | 60..1657 | 7990 | 100 | Plus |
| boi-RE | 4316 | CG32796-RE | 1832..3429 | 60..1657 | 7990 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:58:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2446890..2447597 | 767..60 | 3540 | 100 | Minus |
| X | 23542271 | X | 2445054..2445595 | 1657..1116 | 2710 | 100 | Minus |
| X | 23542271 | X | 2446642..2446824 | 950..768 | 915 | 100 | Minus |
| X | 23542271 | X | 2446411..2446578 | 1117..950 | 840 | 100 | Minus |
| X | 23542271 | X | 2447657..2447699 | 59..17 | 215 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:59:00 has no hits.
BO11720.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:49:54 Download gff for
BO11720.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| boi-RA | 1..1644 | 17..1660 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:04:58 Download gff for
BO11720.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| boi-RA | 183..1830 | 6..1657 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:06:35 Download gff for
BO11720.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| boi-RA | 190..1830 | 17..1659 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:49:55 Download gff for
BO11720.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| boi-RA | 183..1830 | 6..1657 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:35:28 Download gff for
BO11720.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| boi-RA | 194..1834 | 17..1659 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:35:28 Download gff for
BO11720.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2445051..2445593 | 1118..1659 | 99 | <- | Minus |
| X | 2446411..2446577 | 951..1117 | 100 | <- | Minus |
| X | 2446642..2446824 | 768..950 | 100 | <- | Minus |
| X | 2446890..2447597 | 60..767 | 100 | <- | Minus |
| X | 2447657..2447699 | 17..59 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:06:35 Download gff for
BO11720.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2339084..2339626 | 1118..1659 | 99 | <- | Minus |
| arm_X | 2340444..2340610 | 951..1117 | 100 | <- | Minus |
| arm_X | 2340675..2340857 | 768..950 | 100 | <- | Minus |
| arm_X | 2340923..2341630 | 60..767 | 100 | <- | Minus |
| arm_X | 2341690..2341732 | 17..59 | 100 | | Minus |
BO11720.pep Sequence
Translation from 16 to 1675
> BO11720.pep
MIWSGNARYSNVQNSSMVPPSRPNVTRLSDESVMLRWSVPQNSGLQITFF
KVQYRMLGDGKNRRKNWQTTSDNIPYGNAHGSGPGQGNSHWRARNRDREY
EMGNPPKNFTSSVTGLTAGKYYRFRIVAVYSNNDNKEGNTSLKFFLQNGT
SKSNLPVPELREVETLSESAVVLHWSLVSSTQNEDIDGYYAYYRPADSAA
EYLKATVDGGMSRSFKIDLLRPGTPYEFKLQSFNSDAASEFSAIRQARTR
KTHEQPASSSATPVPANKAVEQHQNSLYPLIAGAAGGGILLLIASLVVCL
CLKRRENSQPEDENKPQLEHIQADFVTSAVLGVGGHHKSGDVRRLNGVIP
RMNITPNPLAQETASDKNNSGLHQNGLHHAQPYHPPGTPTLMHKRLDYHQ
QPPPVPPHSAYYQQAPTHQPSPMMERSVRGHQQPGGFHMEEGTPTPTRIP
SLRRQRRTSGNQQVHNSHSNLNIGLSHHNNNNNNLPPHHQHLHHHPGHPG
GLVGIPIVPGSPRVQRSPMPSRAMIKRTRLGSHTDNISSGSLNSIEVASF
LDH
BO11720.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:48:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| boi-PA | 547 | CG32796-PA | 1..547 | 1..547 | 2930 | 100 | Plus |
| boi-PF | 998 | CG32796-PF | 466..998 | 15..547 | 2850 | 99.8 | Plus |
| boi-PE | 998 | CG32796-PE | 466..998 | 15..547 | 2850 | 99.8 | Plus |
| boi-PB | 998 | CG32796-PB | 466..998 | 15..547 | 2850 | 99.8 | Plus |
| boi-PG | 1105 | CG32796-PG | 466..821 | 15..370 | 1846 | 99.2 | Plus |
