Clone BO11723 Report

Search the DGRC for BO11723

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:117
Well:23
Vector:pDNR-Dual
Associated Gene/Transcriptdnd-RA
Protein status:BO11723.pep: validated full length
Sequenced Size:571

Clone Sequence Records

BO11723.3prime Sequence

569 bp (568 high quality bases) assembled on 2006-04-19

> BO11723.3prime
ATGGTCTAGAAAGCTTGCCTTCTTCATATTCTTGCAGACCCAGTCCATTC
CCTCCTTTAGTCCAGTGCCATCCACAGCGGTACAGGCCTTGATCTCCCAG
GTTCGTCCCTGCAGTTGCACCAAGCTCATCTTCTCGGCCACCTCGGCGGC
ACTCATGGCATCCGGCATATCCTGTTTGTTAGCGAAAATCAGCACGGGAA
CTTGCTTCAACCGATTGTCCATGAGCATTTCGAATAGTTCACTACCCGCC
TCGGGCAGGCGAGTCCGATCTGTACAGTCAATTACATAGATCAGCACATC
AGTATTCGCAAAATAGTTCTTCCAATATGGACGTATCTTCCATTGACCAC
CAATATCCCATACATTCAGTTTGAAACCATCGGCTGCCACGGACTTGATG
TTAAATCCTGCCGTGGGCGTTACCGTGGTTATGTCCTCCGATGCCAGCTG
CTTCAGTATCGTGGTCTTGCCAGCATTATCCAATCCTAGGAGCAGGATGC
GAGCCTCCTTTTCCGGATTGGGTCTCAGTTTACGCAACAGCGATAGCAGA
CCCATGTCGACTGATAACT

BO11723.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:29:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG6560-PA 540 CG6560-RA 1..537 555..19 2685 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 20:09:40
Subject Length Description Subject Range Query Range Score Percent Strand
dnd-RA 836 CG6560-RA 214..750 555..19 2685 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 20:09:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21885762..21886035 19..292 1370 100 Plus
3R 32079331 3R 21886093..21886225 292..424 665 100 Plus
3R 32079331 3R 21886286..21886417 422..553 660 100 Plus
Blast to na_te.dros performed on 2015-01-31 20:09:37 has no hits.

BO11723.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:14:46 Download gff for BO11723.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6560-PA 1..540 15..555 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:41:41 Download gff for BO11723.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6560-PA 1..540 15..555 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 11:36:58 Download gff for BO11723.3prime
Subject Subject Range Query Range Percent Splice Strand
dnd-RA 214..756 12..555 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 22:49:44 Download gff for BO11723.3prime
Subject Subject Range Query Range Percent Splice Strand
dnd-RA 214..756 12..555 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 22:49:44 Download gff for BO11723.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 21885756..21886034 12..291 98 <- Plus
3R 21886093..21886224 292..423 100 <- Plus
3R 21886288..21886417 424..553 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 11:36:58 Download gff for BO11723.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17711478..17711756 12..291 98 <- Plus
arm_3R 17711815..17711946 292..423 100 <- Plus
arm_3R 17712010..17712139 424..553 100   Plus

BO11723.5prime Sequence

569 bp (568 high quality bases) assembled on 2006-04-19

> BO11723.5prime
GAAGTTATCAGTCGACATGGGTCTGCTATCGCTGTTGCGTAAACTGAGAC
CCAATCCGGAAAAGGAGGCTCGCATCCTGCTCCTAGGATTGGATAATGCT
GGCAAGACCACGATACTGAAGCAGCTGGCATCGGAGGACATAACCACGGT
AACGCCCACGGCAGGATTTAACATCAAGTCCGTGGCAGCCGATGGTTTCA
AACTGAATGTATGGGATATTGGTGGTCAATGGAAGATACGTCCATATTGG
AAGAACTATTTTGCGAATACTGATGTGCTGATCTATGTAATTGACTGTAC
AGATCGGACTCGCCTGCCCGAGGCGGGTAGTGAACTATTCGAAATGCTCA
TGGACAATCGGTTGAAGCAAGTTCCCGTGCTGATTTTCGCTAACAAACAG
GATATGCCGGATGCCATGAGTGCCGCCGAGGTGGCCGAGAAGATGAGCTT
GGTGCAACTGCAGGGACGAACCTGGGAGATCAAGGCCTGTACCGCTGTGG
ATGGCACTGGACTAAAGGAGGGAATGGACTGGGTCTGCAAGAATATGAAG
AAGGCAAGCTTTCTAGACC

BO11723.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:29:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG6560-PA 540 CG6560-RA 1..537 17..553 2685 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 05:28:44
Subject Length Description Subject Range Query Range Score Percent Strand
dnd-RA 836 CG6560-RA 214..750 17..553 2685 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 05:28:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21885762..21886035 553..280 1370 100 Minus
3R 32079331 3R 21886093..21886225 280..148 665 100 Minus
3R 32079331 3R 21886286..21886417 150..19 660 100 Minus
Blast to na_te.dros performed on 2015-02-04 05:28:43 has no hits.

BO11723.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:14:47 Download gff for BO11723.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6560-PA 1..540 17..557 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:41:42 Download gff for BO11723.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6560-PA 1..540 17..557 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 07:13:44 Download gff for BO11723.5prime
Subject Subject Range Query Range Percent Splice Strand
dnd-RA 214..756 17..560 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:45:45 Download gff for BO11723.5prime
Subject Subject Range Query Range Percent Splice Strand
dnd-RA 214..756 17..560 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:45:45 Download gff for BO11723.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 21885756..21886034 281..560 98 <- Minus
3R 21886093..21886224 149..280 100 <- Minus
3R 21886288..21886417 19..148 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 07:13:44 Download gff for BO11723.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17711478..17711756 281..560 98 <- Minus
arm_3R 17711815..17711946 149..280 100 <- Minus
arm_3R 17712010..17712139 19..148 100   Minus

BO11723.complete Sequence

571 bp assembled on 2006-10-11

GenBank Submission: FJ632168

> BO11723.complete
GAAGTTATCAGTCGACATGGGTCTGCTATCGCTGTTGCGTAAACTGAGAC
CCAATCCGGAAAAGGAGGCTCGCATCCTGCTCCTAGGATTGGATAATGCT
GGCAAGACCACGATACTGAAGCAGCTGGCATCGGAGGACATAACCACGGT
AACGCCCACGGCAGGATTTAACATCAAGTCCGTGGCAGCCGATGGTTTCA
AACTGAATGTATGGGATATTGGTGGTCAATGGAAGATACGTCCATATTGG
AAGAACTATTTTGCGAATACTGATGTGCTGATCTATGTAATTGACTGTAC
AGATCGGACTCGCCTGCCCGAGGCGGGTAGTGAACTATTCGAAATGCTCA
TGGACAATCGGTTGAAGCAAGTTCCCGTGCTGATTTTCGCTAACAAACAG
GATATGCCGGATGCCATGAGTGCCGCCGAGGTGGCCGAGAAGATGAGCTT
GGTGCAACTGCAGGGACGAACCTGGGAGATCAAGGCCTGTACCGCTGTGG
ATGGCACTGGACTAAAGGAGGGAATGGACTGGGTCTGCAAGAATATGAAG
AAGGCAAGCTTTCTAGACCAT

BO11723.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:01:29
Subject Length Description Subject Range Query Range Score Percent Strand
dnd-RA 540 CG6560-PA 1..537 17..553 2685 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:01:30
Subject Length Description Subject Range Query Range Score Percent Strand
dnd-RA 836 CG6560-RA 214..750 17..553 2685 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:01:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21885762..21886035 553..280 1370 100 Minus
3R 32079331 3R 21886093..21886225 280..148 665 100 Minus
3R 32079331 3R 21886286..21886417 150..19 660 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:01:27 has no hits.

BO11723.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:49:55 Download gff for BO11723.complete
Subject Subject Range Query Range Percent Splice Strand
CG6560-RA 1..540 17..557 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:05:00 Download gff for BO11723.complete
Subject Subject Range Query Range Percent Splice Strand
CG6560-RA 210..752 17..560 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:36:44 Download gff for BO11723.complete
Subject Subject Range Query Range Percent Splice Strand
dnd-RA 214..750 17..555 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:49:56 Download gff for BO11723.complete
Subject Subject Range Query Range Percent Splice Strand
CG6560-RA 210..752 17..560 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:42:33 Download gff for BO11723.complete
Subject Subject Range Query Range Percent Splice Strand
dnd-RA 214..750 17..555 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:42:33 Download gff for BO11723.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21885760..21886034 281..555 99 <- Minus
3R 21886093..21886224 149..280 100 <- Minus
3R 21886288..21886418 17..148 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:36:44 Download gff for BO11723.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17711815..17711946 149..280 100 <- Minus
arm_3R 17711482..17711756 281..555 99 <- Minus
arm_3R 17712010..17712140 17..148 99   Minus

BO11723.pep Sequence

Translation from 16 to 571

> BO11723.pep
MGLLSLLRKLRPNPEKEARILLLGLDNAGKTTILKQLASEDITTVTPTAG
FNIKSVAADGFKLNVWDIGGQWKIRPYWKNYFANTDVLIYVIDCTDRTRL
PEAGSELFEMLMDNRLKQVPVLIFANKQDMPDAMSAAEVAEKMSLVQLQG
RTWEIKACTAVDGTGLKEGMDWVCKNMKKASFLDH

BO11723.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:48:23
Subject Length Description Subject Range Query Range Score Percent Strand
dnd-PA 179 CG6560-PA 1..179 1..179 932 100 Plus
Arf79F-PJ 182 CG8385-PJ 15..181 15..181 447 50.3 Plus
Arf79F-PI 182 CG8385-PI 15..181 15..181 447 50.3 Plus
Arf79F-PH 182 CG8385-PH 15..181 15..181 447 50.3 Plus
Arf79F-PF 182 CG8385-PF 15..181 15..181 447 50.3 Plus