Clone Sequence Records
BO11723.3prime Sequence
569 bp (568 high quality bases) assembled on 2006-04-19
> BO11723.3prime
ATGGTCTAGAAAGCTTGCCTTCTTCATATTCTTGCAGACCCAGTCCATTC
CCTCCTTTAGTCCAGTGCCATCCACAGCGGTACAGGCCTTGATCTCCCAG
GTTCGTCCCTGCAGTTGCACCAAGCTCATCTTCTCGGCCACCTCGGCGGC
ACTCATGGCATCCGGCATATCCTGTTTGTTAGCGAAAATCAGCACGGGAA
CTTGCTTCAACCGATTGTCCATGAGCATTTCGAATAGTTCACTACCCGCC
TCGGGCAGGCGAGTCCGATCTGTACAGTCAATTACATAGATCAGCACATC
AGTATTCGCAAAATAGTTCTTCCAATATGGACGTATCTTCCATTGACCAC
CAATATCCCATACATTCAGTTTGAAACCATCGGCTGCCACGGACTTGATG
TTAAATCCTGCCGTGGGCGTTACCGTGGTTATGTCCTCCGATGCCAGCTG
CTTCAGTATCGTGGTCTTGCCAGCATTATCCAATCCTAGGAGCAGGATGC
GAGCCTCCTTTTCCGGATTGGGTCTCAGTTTACGCAACAGCGATAGCAGA
CCCATGTCGACTGATAACT
BO11723.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:29:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6560-PA | 540 | CG6560-RA | 1..537 | 555..19 | 2685 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 20:09:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dnd-RA | 836 | CG6560-RA | 214..750 | 555..19 | 2685 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 20:09:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21885762..21886035 | 19..292 | 1370 | 100 | Plus |
3R | 32079331 | 3R | 21886093..21886225 | 292..424 | 665 | 100 | Plus |
3R | 32079331 | 3R | 21886286..21886417 | 422..553 | 660 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 20:09:37 has no hits.
BO11723.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:14:46 Download gff for
BO11723.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6560-PA | 1..540 | 15..555 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:41:41 Download gff for
BO11723.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6560-PA | 1..540 | 15..555 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 11:36:58 Download gff for
BO11723.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dnd-RA | 214..756 | 12..555 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 22:49:44 Download gff for
BO11723.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dnd-RA | 214..756 | 12..555 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 22:49:44 Download gff for
BO11723.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21885756..21886034 | 12..291 | 98 | <- | Plus |
3R | 21886093..21886224 | 292..423 | 100 | <- | Plus |
3R | 21886288..21886417 | 424..553 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 11:36:58 Download gff for
BO11723.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17711478..17711756 | 12..291 | 98 | <- | Plus |
arm_3R | 17711815..17711946 | 292..423 | 100 | <- | Plus |
arm_3R | 17712010..17712139 | 424..553 | 100 | | Plus |
BO11723.5prime Sequence
569 bp (568 high quality bases) assembled on 2006-04-19
> BO11723.5prime
GAAGTTATCAGTCGACATGGGTCTGCTATCGCTGTTGCGTAAACTGAGAC
CCAATCCGGAAAAGGAGGCTCGCATCCTGCTCCTAGGATTGGATAATGCT
GGCAAGACCACGATACTGAAGCAGCTGGCATCGGAGGACATAACCACGGT
AACGCCCACGGCAGGATTTAACATCAAGTCCGTGGCAGCCGATGGTTTCA
AACTGAATGTATGGGATATTGGTGGTCAATGGAAGATACGTCCATATTGG
AAGAACTATTTTGCGAATACTGATGTGCTGATCTATGTAATTGACTGTAC
AGATCGGACTCGCCTGCCCGAGGCGGGTAGTGAACTATTCGAAATGCTCA
TGGACAATCGGTTGAAGCAAGTTCCCGTGCTGATTTTCGCTAACAAACAG
GATATGCCGGATGCCATGAGTGCCGCCGAGGTGGCCGAGAAGATGAGCTT
GGTGCAACTGCAGGGACGAACCTGGGAGATCAAGGCCTGTACCGCTGTGG
ATGGCACTGGACTAAAGGAGGGAATGGACTGGGTCTGCAAGAATATGAAG
AAGGCAAGCTTTCTAGACC
BO11723.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:29:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6560-PA | 540 | CG6560-RA | 1..537 | 17..553 | 2685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 05:28:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dnd-RA | 836 | CG6560-RA | 214..750 | 17..553 | 2685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 05:28:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21885762..21886035 | 553..280 | 1370 | 100 | Minus |
3R | 32079331 | 3R | 21886093..21886225 | 280..148 | 665 | 100 | Minus |
3R | 32079331 | 3R | 21886286..21886417 | 150..19 | 660 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 05:28:43 has no hits.
BO11723.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:14:47 Download gff for
BO11723.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6560-PA | 1..540 | 17..557 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:41:42 Download gff for
BO11723.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6560-PA | 1..540 | 17..557 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 07:13:44 Download gff for
BO11723.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dnd-RA | 214..756 | 17..560 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:45:45 Download gff for
BO11723.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dnd-RA | 214..756 | 17..560 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:45:45 Download gff for
BO11723.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21885756..21886034 | 281..560 | 98 | <- | Minus |
3R | 21886093..21886224 | 149..280 | 100 | <- | Minus |
3R | 21886288..21886417 | 19..148 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 07:13:44 Download gff for
BO11723.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17711478..17711756 | 281..560 | 98 | <- | Minus |
arm_3R | 17711815..17711946 | 149..280 | 100 | <- | Minus |
arm_3R | 17712010..17712139 | 19..148 | 100 | | Minus |
BO11723.complete Sequence
571 bp assembled on 2006-10-11
GenBank Submission: FJ632168
> BO11723.complete
GAAGTTATCAGTCGACATGGGTCTGCTATCGCTGTTGCGTAAACTGAGAC
CCAATCCGGAAAAGGAGGCTCGCATCCTGCTCCTAGGATTGGATAATGCT
GGCAAGACCACGATACTGAAGCAGCTGGCATCGGAGGACATAACCACGGT
AACGCCCACGGCAGGATTTAACATCAAGTCCGTGGCAGCCGATGGTTTCA
AACTGAATGTATGGGATATTGGTGGTCAATGGAAGATACGTCCATATTGG
AAGAACTATTTTGCGAATACTGATGTGCTGATCTATGTAATTGACTGTAC
AGATCGGACTCGCCTGCCCGAGGCGGGTAGTGAACTATTCGAAATGCTCA
TGGACAATCGGTTGAAGCAAGTTCCCGTGCTGATTTTCGCTAACAAACAG
GATATGCCGGATGCCATGAGTGCCGCCGAGGTGGCCGAGAAGATGAGCTT
GGTGCAACTGCAGGGACGAACCTGGGAGATCAAGGCCTGTACCGCTGTGG
ATGGCACTGGACTAAAGGAGGGAATGGACTGGGTCTGCAAGAATATGAAG
AAGGCAAGCTTTCTAGACCAT
BO11723.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:01:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dnd-RA | 540 | CG6560-PA | 1..537 | 17..553 | 2685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:01:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dnd-RA | 836 | CG6560-RA | 214..750 | 17..553 | 2685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:01:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21885762..21886035 | 553..280 | 1370 | 100 | Minus |
3R | 32079331 | 3R | 21886093..21886225 | 280..148 | 665 | 100 | Minus |
3R | 32079331 | 3R | 21886286..21886417 | 150..19 | 660 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:01:27 has no hits.
BO11723.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:49:55 Download gff for
BO11723.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6560-RA | 1..540 | 17..557 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:05:00 Download gff for
BO11723.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6560-RA | 210..752 | 17..560 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:36:44 Download gff for
BO11723.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dnd-RA | 214..750 | 17..555 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:49:56 Download gff for
BO11723.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6560-RA | 210..752 | 17..560 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:42:33 Download gff for
BO11723.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dnd-RA | 214..750 | 17..555 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:42:33 Download gff for
BO11723.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21885760..21886034 | 281..555 | 99 | <- | Minus |
3R | 21886093..21886224 | 149..280 | 100 | <- | Minus |
3R | 21886288..21886418 | 17..148 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:36:44 Download gff for
BO11723.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17711815..17711946 | 149..280 | 100 | <- | Minus |
arm_3R | 17711482..17711756 | 281..555 | 99 | <- | Minus |
arm_3R | 17712010..17712140 | 17..148 | 99 | | Minus |
BO11723.pep Sequence
Translation from 16 to 571
> BO11723.pep
MGLLSLLRKLRPNPEKEARILLLGLDNAGKTTILKQLASEDITTVTPTAG
FNIKSVAADGFKLNVWDIGGQWKIRPYWKNYFANTDVLIYVIDCTDRTRL
PEAGSELFEMLMDNRLKQVPVLIFANKQDMPDAMSAAEVAEKMSLVQLQG
RTWEIKACTAVDGTGLKEGMDWVCKNMKKASFLDH
BO11723.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:48:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dnd-PA | 179 | CG6560-PA | 1..179 | 1..179 | 932 | 100 | Plus |
Arf79F-PJ | 182 | CG8385-PJ | 15..181 | 15..181 | 447 | 50.3 | Plus |
Arf79F-PI | 182 | CG8385-PI | 15..181 | 15..181 | 447 | 50.3 | Plus |
Arf79F-PH | 182 | CG8385-PH | 15..181 | 15..181 | 447 | 50.3 | Plus |
Arf79F-PF | 182 | CG8385-PF | 15..181 | 15..181 | 447 | 50.3 | Plus |