Clone BO11724 Report

Search the DGRC for BO11724

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:117
Well:24
Vector:pDNR-Dual
Associated Gene/TranscriptGlycogenin-RB
Protein status:BO11724.pep: validated full length
Sequenced Size:1033

Clone Sequence Records

BO11724.3prime Sequence

884 bp (865 high quality bases) assembled on 2006-04-19

> BO11724.3prime
ATGGTCTAGAAAGCTTGCTGAGCTACCAGTTTCTTCCGACTCCTTATCGG
TCTTCCTCTCCAGCGTCTGCGATATTTTCTTCCAGATATTCTCGAACGAA
TCGGCGCCGGTGTAGTCAATCTGTCCAGACTCCCAGCACTGGCGGCGCAT
CTGGTTCTCGTAGGCCTCCTGTTCGGGAGTGCGCTGCTGACCGATGCGTA
GCTGTGACAGAGCACCAGCCAGACCCGCCATTTCGGTGGACAGGGACTGG
ATGACATTTTCGCAAAAGATGTTCCACCACAGCTGAATCAAATCCTGGGC
ATGAGCATACTCCGACGAAACGCTGGCCACCTTTGTTTCCGAGTTGAACT
GAATCAGCCAGGGCTTCAGCTTGCCGGCAAAATGCAAAATCTTAATCTTA
TCTCTGAACTGTTTGAAGGCGGGCAGATAACAGTACGAGGCATAAGCCGT
CACATTGTACACAAATGGCAAATGCTTCTTAATGTCCGCCGTCGACCAGT
CGGCAAAGAACTGATTCAGCAGACCCTGGTCACCGCCATCGAAGCTGCCA
TTCTTCACGGCAAACTCTGTGATCTGGGCAAAGGTGTCCACGCTAGGTTT
GAACACAAACACGCCGGAATTGAAGCAATCCGGCCAGCTGACATCCGGAG
CAGCCGACAGTTCCTCGCGCTCGAAGAGCTCATCGCAGTTTTGCAAGACC
AGTGTGTCCGCATCCAGGAAGACGCACTTCTCAAACTGAACGAGGCGCCA
GCAGTGGAGTTTTGTGAAGGTCACGCCTAGTTCGGGTCGCGAGAGGAGCG
CCAGATTGGCGGCATCCTGTGAGTCGAGCACATTGACCTCCTGCACCACA
TTGTAGACCTCCTTCAGTCGGTCGCGCATCGCCT

BO11724.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:29:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG9480-PB 1002 Glycogenin-RB 134..999 884..19 4330 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:44:18
Subject Length Description Subject Range Query Range Score Percent Strand
Glycogenin-RI 2404 CG44244-RI 329..1194 884..19 4330 100 Minus
Glycogenin-RB 2378 CG44244-RB 303..1168 884..19 4330 100 Minus
Glycogenin-RH 2010 CG44244-RH 303..1160 884..27 4290 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:44:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21205009..21205301 700..408 1465 100 Minus
2R 25286936 2R 21208469..21208679 229..19 1055 100 Minus
2R 25286936 2R 21204739..21204925 884..698 935 100 Minus
2R 25286936 2R 21205361..21205542 409..228 910 100 Minus
Blast to na_te.dros performed on 2015-02-12 11:44:15 has no hits.

BO11724.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:14:48 Download gff for BO11724.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9480-PB 134..1002 18..884 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:41:43 Download gff for BO11724.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9480-PB 134..1002 18..884 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 02:12:06 Download gff for BO11724.3prime
Subject Subject Range Query Range Percent Splice Strand
Glycogenin-RB 303..1168 19..884 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:54:10 Download gff for BO11724.3prime
Subject Subject Range Query Range Percent Splice Strand
Glycogenin-RB 303..1168 19..884 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:54:10 Download gff for BO11724.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 21205361..21205541 229..409 100 -> Minus
2R 21208470..21208679 19..228 100   Minus
2R 21205010..21205299 410..699 100 -> Minus
2R 21204739..21204923 700..884 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 02:12:06 Download gff for BO11724.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17092244..17092428 700..884 100 -> Minus
arm_2R 17092515..17092804 410..699 100 -> Minus
arm_2R 17092866..17093046 229..409 100 -> Minus
arm_2R 17095975..17096184 19..228 100   Minus

BO11724.5prime Sequence

886 bp (771 high quality bases) assembled on 2006-04-19

> BO11724.5prime
GAAGTTATCAGTCGACATGAGCAAATTCGCTTGGGTGACGCTGACGACAA
ATGACACGTACTCACTGGGTGCCTTGGTCTTGGCCCACTCACTGAAAAGG
GCCAAGACCGCCCACCAGCTGGCCGTTCTGGTCACGCCCAATGTCTCGCA
GGCGATGCGCGACCGACTGAAGGAGGTCTACAATGTGGTGCAGGAGGTCA
ATGTGCTCGACTCACAGGATGCCGCCAATCTGGCGCTCCTCTCGCGACCC
GAACTAGGCGTGACCTTCACAAAACTCCACTGCTGGCGCCTCGTTCAGTT
TGAGAAGTGCGTCTTCCTGGATGCGGACACACTGGTCTTGCAAAACTGCG
ATGAGCTCTTCGAGCGCGAGGAACTGTCGGCTGCTCCGGATGTCAGCTGG
CCGGATTGCTTCAATTCCGGCGTGTTTGTGTTCAAACCTAGCGTGGACAC
CTTTGCCCAGATCACAGAGTTTGCCGTGAAGAATGGCAGCTTCGATGGCG
GTGACCAGGGTCTGCTGAATCAGTTCTTTGCCGACTGGTCGACGGCGGAC
ATTAAGAAGCATTTGCCATTTGTGTACAATGTGACGGCTTATGCCTCGTA
CTGTTATCTGCCCGCCTTCAAACAGTTCAGAGATAAGATTAAGATTTTGC
ATTTTGCCGGCAAGCTGAAGCCCTGGCTGATTCAGTTCAACTCGGAAACA
AAGGTGGCCAGCGTTTCGTCGGAGTATGCTCATGCCCAGGATTTGATTCA
GCTGTGGTGGAACATCTTTTGCGAAAATGTCATCCAGTCCCTGTCCACCG
AAATGGCGGGTCTGGCTGGTGCTCTGTCACAGCTACGCATCGGTCAGCAG
CGCACTCCCGAACAGGGAGGCTACGAGAACCAGATG

BO11724.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:29:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG9480-PB 1002 Glycogenin-RB 1..850 17..866 4250 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:09:27
Subject Length Description Subject Range Query Range Score Percent Strand
Glycogenin-RH 2010 CG44244-RH 170..1039 17..886 4305 99.8 Plus
Glycogenin-RB 2378 CG44244-RB 170..1039 17..886 4305 99.8 Plus
Glycogenin-RI 2404 CG44244-RI 203..1065 24..886 4270 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:09:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21204613..21204925 24..336 1565 100 Plus
2R 25286936 2R 21205009..21205301 334..626 1465 100 Plus
2R 25286936 2R 21205361..21205542 625..806 910 100 Plus
2R 25286936 2R 21208469..21208550 805..886 365 96.3 Plus
Blast to na_te.dros performed on 2015-02-12 05:09:24 has no hits.

BO11724.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:14:49 Download gff for BO11724.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9480-PB 1..870 17..886 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:41:45 Download gff for BO11724.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9480-PB 1..870 17..886 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:51:11 Download gff for BO11724.5prime
Subject Subject Range Query Range Percent Splice Strand
Glycogenin-RB 170..1039 17..886 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:56:19 Download gff for BO11724.5prime
Subject Subject Range Query Range Percent Splice Strand
Glycogenin-RB 170..1039 17..886 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:56:19 Download gff for BO11724.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21208470..21208550 806..886 97   Plus
2R 21204605..21204923 12..334 98 -> Plus
2R 21205010..21205299 335..624 100 -> Plus
2R 21205361..21205541 625..805 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:51:11 Download gff for BO11724.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17092110..17092428 12..334 98 -> Plus
arm_2R 17092515..17092804 335..624 100 -> Plus
arm_2R 17092866..17093046 625..805 100 -> Plus
arm_2R 17095975..17096055 806..886 97   Plus

BO11724.complete Sequence

1033 bp assembled on 2006-10-11

GenBank Submission: FJ632169

> BO11724.complete
GAAGTTATCAGTCGACATGAGCAAATTCGCTTGGGTGACGCTGACGACAA
ATGACACGTACTCACTGGGTGCCTTGGTCTTGGCCCACTCACTGAAAAGG
GCCAAGACCGCCCACCAGCTGGCCGTTCTGGTCACGCCCAATGTCTCGCA
GGCGATGCGCGACCGACTGAAGGAGGTCTACAATGTGGTGCAGGAGGTCA
ATGTGCTCGACTCACAGGATGCCGCCAATCTGGCGCTCCTCTCGCGACCC
GAACTAGGCGTGACCTTCACAAAACTCCACTGCTGGCGCCTCGTTCAGTT
TGAGAAGTGCGTCTTCCTGGATGCGGACACACTGGTCTTGCAAAACTGCG
ATGAGCTCTTCGAGCGCGAGGAACTGTCGGCTGCTCCGGATGTCAGCTGG
CCGGATTGCTTCAATTCCGGCGTGTTTGTGTTCAAACCTAGCGTGGACAC
CTTTGCCCAGATCACAGAGTTTGCCGTGAAGAATGGCAGCTTCGATGGCG
GTGACCAGGGTCTGCTGAATCAGTTCTTTGCCGACTGGTCGACGGCGGAC
ATTAAGAAGCATTTGCCATTTGTGTACAATGTGACGGCTTATGCCTCGTA
CTGTTATCTGCCCGCCTTCAAACAGTTCAGAGATAAGATTAAGATTTTGC
ATTTTGCCGGCAAGCTGAAGCCCTGGCTGATTCAGTTCAACTCGGAAACA
AAGGTGGCCAGCGTTTCGTCGGAGTATGCTCATGCCCAGGATTTGATTCA
GCTGTGGTGGAACATCTTTTGCGAAAATGTCATCCAGTCCCTGTCCACCG
AAATGGCGGGTCTGGCTGGTGCTCTGTCACAGCTACGCATCGGTCAGCAG
CGCACTCCCGAACAGGAGGCCTACGAGAACCAGATGCGCCGCCAGTGCTG
GGAGTCTGGACAGATTGACTACACCGGCGCCGATTCGTTCGAGAATATCT
GGAAGAAAATATCGCAGACGCTGGAGAGGAAGACCGATAAGGAGTCGGAA
GAAACTGGTAGCTCAGCAAGCTTTCTAGACCAT

BO11724.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:48:20
Subject Length Description Subject Range Query Range Score Percent Strand
Glycogenin-RB 1002 CG44244-PB 1..999 17..1015 4995 100 Plus
Glycogenin-RH 1005 CG44244-PH 1..991 17..1007 4955 100 Plus
Glycogenin-RI 864 CG44244-PI 1..861 155..1015 4305 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:48:21
Subject Length Description Subject Range Query Range Score Percent Strand
Glycogenin-RB 2378 CG44244-RB 170..1168 17..1015 4995 100 Plus
Glycogenin-RI 2404 CG44244-RI 203..1194 24..1015 4960 100 Plus
Glycogenin-RH 2010 CG44244-RH 170..1160 17..1007 4955 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:48:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21204613..21204925 24..336 1565 100 Plus
2R 25286936 2R 21205009..21205301 334..626 1465 100 Plus
2R 25286936 2R 21208469..21208679 805..1015 1055 100 Plus
2R 25286936 2R 21205361..21205542 625..806 910 100 Plus
Blast to na_te.dros performed on 2014-11-27 19:48:18 has no hits.

BO11724.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:49:57 Download gff for BO11724.complete
Subject Subject Range Query Range Percent Splice Strand
Glycogenin-RB 1..1002 17..1016 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:05:01 Download gff for BO11724.complete
Subject Subject Range Query Range Percent Splice Strand
Glycogenin-RB 166..1164 17..1015 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:03:32 Download gff for BO11724.complete
Subject Subject Range Query Range Percent Splice Strand
Glycogenin-RB 170..1168 17..1017 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:49:57 Download gff for BO11724.complete
Subject Subject Range Query Range Percent Splice Strand
Glycogenin-RB 166..1164 17..1015 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:08:39 Download gff for BO11724.complete
Subject Subject Range Query Range Percent Splice Strand
Glycogenin-RB 170..1168 17..1017 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:08:39 Download gff for BO11724.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21204609..21204923 17..334 99 -> Plus
2R 21205010..21205299 335..624 100 -> Plus
2R 21205361..21205541 625..805 100 -> Plus
2R 21208470..21208679 806..1017 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:03:32 Download gff for BO11724.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17092114..17092428 17..334 99 -> Plus
arm_2R 17092515..17092804 335..624 100 -> Plus
arm_2R 17092866..17093046 625..805 100 -> Plus
arm_2R 17095975..17096184 806..1017 99   Plus

BO11724.pep Sequence

Translation from 16 to 1033

> BO11724.pep
MSKFAWVTLTTNDTYSLGALVLAHSLKRAKTAHQLAVLVTPNVSQAMRDR
LKEVYNVVQEVNVLDSQDAANLALLSRPELGVTFTKLHCWRLVQFEKCVF
LDADTLVLQNCDELFEREELSAAPDVSWPDCFNSGVFVFKPSVDTFAQIT
EFAVKNGSFDGGDQGLLNQFFADWSTADIKKHLPFVYNVTAYASYCYLPA
FKQFRDKIKILHFAGKLKPWLIQFNSETKVASVSSEYAHAQDLIQLWWNI
FCENVIQSLSTEMAGLAGALSQLRIGQQRTPEQEAYENQMRRQCWESGQI
DYTGADSFENIWKKISQTLERKTDKESEETGSSASFLDH

BO11724.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:48:20
Subject Length Description Subject Range Query Range Score Percent Strand
Glycogenin-PB 333 CG44244-PB 1..333 1..333 1744 100 Plus
Glycogenin-PH 334 CG44244-PH 1..330 1..330 1730 100 Plus
Glycogenin-PG 356 CG44244-PG 1..356 1..333 1710 93.5 Plus
Glycogenin-PI 287 CG44244-PI 1..287 47..333 1516 100 Plus
Glycogenin-PD 545 CG44244-PD 1..326 1..329 1385 82.6 Plus