Clone Sequence Records
BO11724.3prime Sequence
884 bp (865 high quality bases) assembled on 2006-04-19
> BO11724.3prime
ATGGTCTAGAAAGCTTGCTGAGCTACCAGTTTCTTCCGACTCCTTATCGG
TCTTCCTCTCCAGCGTCTGCGATATTTTCTTCCAGATATTCTCGAACGAA
TCGGCGCCGGTGTAGTCAATCTGTCCAGACTCCCAGCACTGGCGGCGCAT
CTGGTTCTCGTAGGCCTCCTGTTCGGGAGTGCGCTGCTGACCGATGCGTA
GCTGTGACAGAGCACCAGCCAGACCCGCCATTTCGGTGGACAGGGACTGG
ATGACATTTTCGCAAAAGATGTTCCACCACAGCTGAATCAAATCCTGGGC
ATGAGCATACTCCGACGAAACGCTGGCCACCTTTGTTTCCGAGTTGAACT
GAATCAGCCAGGGCTTCAGCTTGCCGGCAAAATGCAAAATCTTAATCTTA
TCTCTGAACTGTTTGAAGGCGGGCAGATAACAGTACGAGGCATAAGCCGT
CACATTGTACACAAATGGCAAATGCTTCTTAATGTCCGCCGTCGACCAGT
CGGCAAAGAACTGATTCAGCAGACCCTGGTCACCGCCATCGAAGCTGCCA
TTCTTCACGGCAAACTCTGTGATCTGGGCAAAGGTGTCCACGCTAGGTTT
GAACACAAACACGCCGGAATTGAAGCAATCCGGCCAGCTGACATCCGGAG
CAGCCGACAGTTCCTCGCGCTCGAAGAGCTCATCGCAGTTTTGCAAGACC
AGTGTGTCCGCATCCAGGAAGACGCACTTCTCAAACTGAACGAGGCGCCA
GCAGTGGAGTTTTGTGAAGGTCACGCCTAGTTCGGGTCGCGAGAGGAGCG
CCAGATTGGCGGCATCCTGTGAGTCGAGCACATTGACCTCCTGCACCACA
TTGTAGACCTCCTTCAGTCGGTCGCGCATCGCCT
BO11724.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:29:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9480-PB | 1002 | Glycogenin-RB | 134..999 | 884..19 | 4330 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:44:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Glycogenin-RI | 2404 | CG44244-RI | 329..1194 | 884..19 | 4330 | 100 | Minus |
Glycogenin-RB | 2378 | CG44244-RB | 303..1168 | 884..19 | 4330 | 100 | Minus |
Glycogenin-RH | 2010 | CG44244-RH | 303..1160 | 884..27 | 4290 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:44:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21205009..21205301 | 700..408 | 1465 | 100 | Minus |
2R | 25286936 | 2R | 21208469..21208679 | 229..19 | 1055 | 100 | Minus |
2R | 25286936 | 2R | 21204739..21204925 | 884..698 | 935 | 100 | Minus |
2R | 25286936 | 2R | 21205361..21205542 | 409..228 | 910 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:44:15 has no hits.
BO11724.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:14:48 Download gff for
BO11724.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9480-PB | 134..1002 | 18..884 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:41:43 Download gff for
BO11724.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9480-PB | 134..1002 | 18..884 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 02:12:06 Download gff for
BO11724.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Glycogenin-RB | 303..1168 | 19..884 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:54:10 Download gff for
BO11724.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Glycogenin-RB | 303..1168 | 19..884 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:54:10 Download gff for
BO11724.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21205361..21205541 | 229..409 | 100 | -> | Minus |
2R | 21208470..21208679 | 19..228 | 100 | | Minus |
2R | 21205010..21205299 | 410..699 | 100 | -> | Minus |
2R | 21204739..21204923 | 700..884 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 02:12:06 Download gff for
BO11724.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17092244..17092428 | 700..884 | 100 | -> | Minus |
arm_2R | 17092515..17092804 | 410..699 | 100 | -> | Minus |
arm_2R | 17092866..17093046 | 229..409 | 100 | -> | Minus |
arm_2R | 17095975..17096184 | 19..228 | 100 | | Minus |
BO11724.5prime Sequence
886 bp (771 high quality bases) assembled on 2006-04-19
> BO11724.5prime
GAAGTTATCAGTCGACATGAGCAAATTCGCTTGGGTGACGCTGACGACAA
ATGACACGTACTCACTGGGTGCCTTGGTCTTGGCCCACTCACTGAAAAGG
GCCAAGACCGCCCACCAGCTGGCCGTTCTGGTCACGCCCAATGTCTCGCA
GGCGATGCGCGACCGACTGAAGGAGGTCTACAATGTGGTGCAGGAGGTCA
ATGTGCTCGACTCACAGGATGCCGCCAATCTGGCGCTCCTCTCGCGACCC
GAACTAGGCGTGACCTTCACAAAACTCCACTGCTGGCGCCTCGTTCAGTT
TGAGAAGTGCGTCTTCCTGGATGCGGACACACTGGTCTTGCAAAACTGCG
ATGAGCTCTTCGAGCGCGAGGAACTGTCGGCTGCTCCGGATGTCAGCTGG
CCGGATTGCTTCAATTCCGGCGTGTTTGTGTTCAAACCTAGCGTGGACAC
CTTTGCCCAGATCACAGAGTTTGCCGTGAAGAATGGCAGCTTCGATGGCG
GTGACCAGGGTCTGCTGAATCAGTTCTTTGCCGACTGGTCGACGGCGGAC
ATTAAGAAGCATTTGCCATTTGTGTACAATGTGACGGCTTATGCCTCGTA
CTGTTATCTGCCCGCCTTCAAACAGTTCAGAGATAAGATTAAGATTTTGC
ATTTTGCCGGCAAGCTGAAGCCCTGGCTGATTCAGTTCAACTCGGAAACA
AAGGTGGCCAGCGTTTCGTCGGAGTATGCTCATGCCCAGGATTTGATTCA
GCTGTGGTGGAACATCTTTTGCGAAAATGTCATCCAGTCCCTGTCCACCG
AAATGGCGGGTCTGGCTGGTGCTCTGTCACAGCTACGCATCGGTCAGCAG
CGCACTCCCGAACAGGGAGGCTACGAGAACCAGATG
BO11724.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:29:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9480-PB | 1002 | Glycogenin-RB | 1..850 | 17..866 | 4250 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:09:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Glycogenin-RH | 2010 | CG44244-RH | 170..1039 | 17..886 | 4305 | 99.8 | Plus |
Glycogenin-RB | 2378 | CG44244-RB | 170..1039 | 17..886 | 4305 | 99.8 | Plus |
Glycogenin-RI | 2404 | CG44244-RI | 203..1065 | 24..886 | 4270 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:09:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21204613..21204925 | 24..336 | 1565 | 100 | Plus |
2R | 25286936 | 2R | 21205009..21205301 | 334..626 | 1465 | 100 | Plus |
2R | 25286936 | 2R | 21205361..21205542 | 625..806 | 910 | 100 | Plus |
2R | 25286936 | 2R | 21208469..21208550 | 805..886 | 365 | 96.3 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:09:24 has no hits.
BO11724.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:14:49 Download gff for
BO11724.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9480-PB | 1..870 | 17..886 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:41:45 Download gff for
BO11724.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9480-PB | 1..870 | 17..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:51:11 Download gff for
BO11724.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Glycogenin-RB | 170..1039 | 17..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:56:19 Download gff for
BO11724.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Glycogenin-RB | 170..1039 | 17..886 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:56:19 Download gff for
BO11724.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21208470..21208550 | 806..886 | 97 | | Plus |
2R | 21204605..21204923 | 12..334 | 98 | -> | Plus |
2R | 21205010..21205299 | 335..624 | 100 | -> | Plus |
2R | 21205361..21205541 | 625..805 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:51:11 Download gff for
BO11724.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17092110..17092428 | 12..334 | 98 | -> | Plus |
arm_2R | 17092515..17092804 | 335..624 | 100 | -> | Plus |
arm_2R | 17092866..17093046 | 625..805 | 100 | -> | Plus |
arm_2R | 17095975..17096055 | 806..886 | 97 | | Plus |
BO11724.complete Sequence
1033 bp assembled on 2006-10-11
GenBank Submission: FJ632169
> BO11724.complete
GAAGTTATCAGTCGACATGAGCAAATTCGCTTGGGTGACGCTGACGACAA
ATGACACGTACTCACTGGGTGCCTTGGTCTTGGCCCACTCACTGAAAAGG
GCCAAGACCGCCCACCAGCTGGCCGTTCTGGTCACGCCCAATGTCTCGCA
GGCGATGCGCGACCGACTGAAGGAGGTCTACAATGTGGTGCAGGAGGTCA
ATGTGCTCGACTCACAGGATGCCGCCAATCTGGCGCTCCTCTCGCGACCC
GAACTAGGCGTGACCTTCACAAAACTCCACTGCTGGCGCCTCGTTCAGTT
TGAGAAGTGCGTCTTCCTGGATGCGGACACACTGGTCTTGCAAAACTGCG
ATGAGCTCTTCGAGCGCGAGGAACTGTCGGCTGCTCCGGATGTCAGCTGG
CCGGATTGCTTCAATTCCGGCGTGTTTGTGTTCAAACCTAGCGTGGACAC
CTTTGCCCAGATCACAGAGTTTGCCGTGAAGAATGGCAGCTTCGATGGCG
GTGACCAGGGTCTGCTGAATCAGTTCTTTGCCGACTGGTCGACGGCGGAC
ATTAAGAAGCATTTGCCATTTGTGTACAATGTGACGGCTTATGCCTCGTA
CTGTTATCTGCCCGCCTTCAAACAGTTCAGAGATAAGATTAAGATTTTGC
ATTTTGCCGGCAAGCTGAAGCCCTGGCTGATTCAGTTCAACTCGGAAACA
AAGGTGGCCAGCGTTTCGTCGGAGTATGCTCATGCCCAGGATTTGATTCA
GCTGTGGTGGAACATCTTTTGCGAAAATGTCATCCAGTCCCTGTCCACCG
AAATGGCGGGTCTGGCTGGTGCTCTGTCACAGCTACGCATCGGTCAGCAG
CGCACTCCCGAACAGGAGGCCTACGAGAACCAGATGCGCCGCCAGTGCTG
GGAGTCTGGACAGATTGACTACACCGGCGCCGATTCGTTCGAGAATATCT
GGAAGAAAATATCGCAGACGCTGGAGAGGAAGACCGATAAGGAGTCGGAA
GAAACTGGTAGCTCAGCAAGCTTTCTAGACCAT
BO11724.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:48:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Glycogenin-RB | 1002 | CG44244-PB | 1..999 | 17..1015 | 4995 | 100 | Plus |
Glycogenin-RH | 1005 | CG44244-PH | 1..991 | 17..1007 | 4955 | 100 | Plus |
Glycogenin-RI | 864 | CG44244-PI | 1..861 | 155..1015 | 4305 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:48:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Glycogenin-RB | 2378 | CG44244-RB | 170..1168 | 17..1015 | 4995 | 100 | Plus |
Glycogenin-RI | 2404 | CG44244-RI | 203..1194 | 24..1015 | 4960 | 100 | Plus |
Glycogenin-RH | 2010 | CG44244-RH | 170..1160 | 17..1007 | 4955 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:48:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21204613..21204925 | 24..336 | 1565 | 100 | Plus |
2R | 25286936 | 2R | 21205009..21205301 | 334..626 | 1465 | 100 | Plus |
2R | 25286936 | 2R | 21208469..21208679 | 805..1015 | 1055 | 100 | Plus |
2R | 25286936 | 2R | 21205361..21205542 | 625..806 | 910 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:48:18 has no hits.
BO11724.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:49:57 Download gff for
BO11724.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Glycogenin-RB | 1..1002 | 17..1016 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:05:01 Download gff for
BO11724.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Glycogenin-RB | 166..1164 | 17..1015 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:03:32 Download gff for
BO11724.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Glycogenin-RB | 170..1168 | 17..1017 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:49:57 Download gff for
BO11724.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Glycogenin-RB | 166..1164 | 17..1015 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:08:39 Download gff for
BO11724.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Glycogenin-RB | 170..1168 | 17..1017 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:08:39 Download gff for
BO11724.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21204609..21204923 | 17..334 | 99 | -> | Plus |
2R | 21205010..21205299 | 335..624 | 100 | -> | Plus |
2R | 21205361..21205541 | 625..805 | 100 | -> | Plus |
2R | 21208470..21208679 | 806..1017 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:03:32 Download gff for
BO11724.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17092114..17092428 | 17..334 | 99 | -> | Plus |
arm_2R | 17092515..17092804 | 335..624 | 100 | -> | Plus |
arm_2R | 17092866..17093046 | 625..805 | 100 | -> | Plus |
arm_2R | 17095975..17096184 | 806..1017 | 99 | | Plus |
BO11724.pep Sequence
Translation from 16 to 1033
> BO11724.pep
MSKFAWVTLTTNDTYSLGALVLAHSLKRAKTAHQLAVLVTPNVSQAMRDR
LKEVYNVVQEVNVLDSQDAANLALLSRPELGVTFTKLHCWRLVQFEKCVF
LDADTLVLQNCDELFEREELSAAPDVSWPDCFNSGVFVFKPSVDTFAQIT
EFAVKNGSFDGGDQGLLNQFFADWSTADIKKHLPFVYNVTAYASYCYLPA
FKQFRDKIKILHFAGKLKPWLIQFNSETKVASVSSEYAHAQDLIQLWWNI
FCENVIQSLSTEMAGLAGALSQLRIGQQRTPEQEAYENQMRRQCWESGQI
DYTGADSFENIWKKISQTLERKTDKESEETGSSASFLDH
BO11724.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:48:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Glycogenin-PB | 333 | CG44244-PB | 1..333 | 1..333 | 1744 | 100 | Plus |
Glycogenin-PH | 334 | CG44244-PH | 1..330 | 1..330 | 1730 | 100 | Plus |
Glycogenin-PG | 356 | CG44244-PG | 1..356 | 1..333 | 1710 | 93.5 | Plus |
Glycogenin-PI | 287 | CG44244-PI | 1..287 | 47..333 | 1516 | 100 | Plus |
Glycogenin-PD | 545 | CG44244-PD | 1..326 | 1..329 | 1385 | 82.6 | Plus |