Clone Sequence Records
BO11727.3prime Sequence
858 bp (824 high quality bases) assembled on 2006-04-20
> BO11727.3prime
ATGGTCTAGAAAGCTTGCATAATCCGCCACCCTGGCGAAACCAATCCTTT
CGTTGCCCTTGTCGAAAACCGTGTAGAACTTGCCAATAAAGACATCACCC
AGAATCCAGAAGCTTAGTCCCTCCATGTAGGTGAAGGCGGACATGCAGTA
GGTTTGGCCATTCTGCGTTACCTTGACTATATAATCCCTTGGTGCCAGGG
TGAAGACAGTACCACCGATATTCAGGTTGACCTTGGGCAGGGATGAGACT
CGGCCGCACCTCACGAATGCCTCACCGTCATTATCGGTGGCGCCCAGCTG
GCGATTGATCTTCCTGTAAGCGGCCAGTGGAACTGCGATTAAGGAGGTGC
CCGTATCGGCGATGGCTTGGCATCCGTTGCACAGCAAAGTGCCATTGGTC
TTGATGGTGTTCACCTTGAACTGCCAGTAGGCAGGAACGGAAACGGGCAC
ATAGGTGAGGCTTCCCCTATAGAGACTCGAGTCAATACCGCCCAGGATCA
GTTCTCCACCGCGCACAGCGGTTCCCTGTCGCTTGAGATAGAAGGAGATA
ACTGGTTCATCGAGCAGTCCCTGGGAGATCATGTTGTCGAACGGCGGAGT
CACTCCATCGACGGCAATCGCGCTGAAGGCCAGTCCCAGGATTCCAGCAA
AAGGAGCATCCACGAAGGTTGTACCCGGCTCGCTGAGTGCTTCGCCGAAT
GTCTGATTCTGAATGCTGATTCCCGCTATGGTCACAATGTCGTTGGACAG
GAAACCCGACAGACTACCAGTTCCGTATTCGATGGCGAACTCCTCACCAT
TGGCCACATAAGTGCTGGATGCCGAAGAATCGTATTTGTTGTGCCTCTGG
CACGCGGT
BO11727.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:29:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17134-PA | 1176 | CG17134-RA | 334..1173 | 858..19 | 4200 | 100 | Minus |
CG6508-PA | 1272 | CG6508-RA | 802..839 | 381..344 | 140 | 94.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:13:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17134-RA | 1263 | CG17134-RA | 362..1201 | 858..19 | 4200 | 100 | Minus |
Bace-RB | 1415 | CG13095-RB | 1034..1146 | 149..34 | 185 | 78.4 | Minus |
Bace-RA | 1200 | CG13095-RA | 1034..1146 | 149..34 | 185 | 78.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:12:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10821066..10821905 | 858..19 | 4200 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:13:01 has no hits.
BO11727.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:14:54 Download gff for
BO11727.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17134-PA | 334..1176 | 15..858 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:41:53 Download gff for
BO11727.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17134-PA | 334..1176 | 15..858 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:28:28 Download gff for
BO11727.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17134-RA | 362..1204 | 15..858 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:44:43 Download gff for
BO11727.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17134-RA | 362..1204 | 15..858 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:44:43 Download gff for
BO11727.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10821066..10821908 | 15..858 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:28:28 Download gff for
BO11727.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10821066..10821908 | 15..858 | 99 | | Minus |
BO11727.5prime Sequence
843 bp (807 high quality bases) assembled on 2006-04-19
> BO11727.5prime
GAAGTTATCAGTCGACATGAGACAGTTGTTAGTTTTATTGGTGCTTGTCG
GGATTGGCCATTCCGCTGCCAAGTTGAATCGCGTCCAGCTCCAAGTGAAC
AAGAATTTCACCAAGACCCATGGCAGTGTTAAGGCCGAGAAGACCGTGCT
GGCATCGAAGTACTCCTTTTTGGCGGAGACCTCTTTCAGTGTCAGTTCGT
CGGGTGCCACCGAAAACCTGCACAATTCCATGAACAATGAGTACTACGGC
GTGATTGCTATCGGAACGCCTGAGCAGAGATTCAACATTCTGTTCGACAC
GGGATCGGCCAATCTGTGGGTTCCAAGTGCAAGTTGCCCGGCTTCGAATA
CCGCGTGCCAGAGGCACAACAAATACGATTCTTCGGCATCCAGCACTTAT
GTGGCCAATGGTGAGGAGTTCGCCATCGAATACGGAACTGGTAGTCTGTC
GGGTTTCCTGTCCAACGACATTGTGACCATAGCGGGAATCAGCATTCAGA
ATCAGACATTCGGCGAAGCACTCAGCGAGCCGGGTACAACCTTCGTGGAT
GCTCCTTTTGCTGGAATCCTGGGACTGGCCTTCAGCGCGATTGCCGTCGA
TGGAGTGACTCCGCCGTTCGACAACATGATCTCCCAGGGACTGCTCGATG
AACCAGTTATCTCCTTCTATCTCAAGCGACAGGGAACCGCTGTGCGCGGT
GGAGAACTGATCCTGGGCGGTATTGACTCGAGTCTCTATAGGGGAAGCCT
CACCTATGTGCCCGTTTCCGTTCCTGCCTACTGGCAGTTCAAGGTGAACA
CCATCAAGACCAATGGCACTTTGCTGTGCAACGGATGCCAAGC
BO11727.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:29:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17134-PA | 1176 | CG17134-RA | 1..827 | 17..843 | 4135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:10:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17134-RA | 1263 | CG17134-RA | 26..855 | 14..843 | 4150 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:10:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10820730..10821559 | 14..843 | 4150 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:10:25 has no hits.
BO11727.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:14:55 Download gff for
BO11727.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17134-PA | 1..827 | 17..843 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:41:54 Download gff for
BO11727.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17134-PA | 1..827 | 17..843 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:51:20 Download gff for
BO11727.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17134-RA | 26..855 | 14..843 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:56:25 Download gff for
BO11727.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17134-RA | 26..855 | 14..843 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:56:25 Download gff for
BO11727.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10820730..10821559 | 14..843 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:51:20 Download gff for
BO11727.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10820730..10821559 | 14..843 | 100 | | Plus |
BO11727.complete Sequence
1207 bp assembled on 2006-10-11
GenBank Submission: FJ632170
> BO11727.complete
GAAGTTATCAGTCGACATGAGACAGTTGTTAGTTTTATTGGTGCTTGTCG
GGATTGGCCATTCCGCTGCCAAGTTGAATCGCGTCCAGCTCCAAGTGAAC
AAGAATTTCACCAAGACCCATGGCAGTGTTAAGGCCGAGAAGACCGTGCT
GGCATCGAAGTACTCCTTTTTGGCGGAGACCTCTTTCAGTGTCAGTTCGT
CGGGTGCCACCGAAAACCTGCACAATTCCATGAACAATGAGTACTACGGC
GTGATTGCTATCGGAACGCCTGAGCAGAGATTCAACATTCTGTTCGACAC
GGGATCGGCCAATCTGTGGGTTCCAAGTGCAAGTTGCCCGGCTTCGAATA
CCGCGTGCCAGAGGCACAACAAATACGATTCTTCGGCATCCAGCACTTAT
GTGGCCAATGGTGAGGAGTTCGCCATCGAATACGGAACTGGTAGTCTGTC
GGGTTTCCTGTCCAACGACATTGTGACCATAGCGGGAATCAGCATTCAGA
ATCAGACATTCGGCGAAGCACTCAGCGAGCCGGGTACAACCTTCGTGGAT
GCTCCTTTTGCTGGAATCCTGGGACTGGCCTTCAGCGCGATTGCCGTCGA
TGGAGTGACTCCGCCGTTCGACAACATGATCTCCCAGGGACTGCTCGATG
AACCAGTTATCTCCTTCTATCTCAAGCGACAGGGAACCGCTGTGCGCGGT
GGAGAACTGATCCTGGGCGGTATTGACTCGAGTCTCTATAGGGGAAGCCT
CACCTATGTGCCCGTTTCCGTTCCTGCCTACTGGCAGTTCAAGGTGAACA
CCATCAAGACCAATGGCACTTTGCTGTGCAACGGATGCCAAGCCATCGCC
GATACGGGCACCTCCTTAATCGCAGTTCCACTGGCCGCTTACAGGAAGAT
CAATCGCCAGCTGGGCGCCACCGATAATGACGGTGAGGCATTCGTGAGGT
GCGGCCGAGTCTCATCCCTGCCCAAGGTCAACCTGAATATCGGTGGTACT
GTCTTCACCCTGGCACCAAGGGATTATATAGTCAAGGTAACGCAGAATGG
CCAAACCTACTGCATGTCCGCCTTCACCTACATGGAGGGACTAAGCTTCT
GGATTCTGGGTGATGTCTTTATTGGCAAGTTCTACACGGTTTTCGACAAG
GGCAACGAAAGGATTGGTTTCGCCAGGGTGGCGGATTATGCAAGCTTTCT
AGACCAT
BO11727.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:37:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17134-RA | 1176 | CG17134-PA | 1..1173 | 17..1189 | 5865 | 100 | Plus |
CG6508-RA | 1272 | CG6508-PA | 802..858 | 827..883 | 180 | 87.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:37:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17134-RA | 1263 | CG17134-RA | 26..1201 | 14..1189 | 5880 | 100 | Plus |
CG6508-RA | 1379 | CG6508-RA | 818..874 | 827..883 | 180 | 87.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:37:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10820730..10821905 | 14..1189 | 5880 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:37:01 has no hits.
BO11727.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:49:59 Download gff for
BO11727.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17134-RA | 1..1176 | 17..1193 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:05:05 Download gff for
BO11727.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17134-RA | 21..1199 | 14..1193 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:14 Download gff for
BO11727.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17134-RA | 29..1201 | 17..1191 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:49:59 Download gff for
BO11727.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17134-RA | 21..1199 | 14..1193 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:05:00 Download gff for
BO11727.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17134-RA | 29..1201 | 17..1191 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:05:00 Download gff for
BO11727.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10820733..10821905 | 17..1191 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:14 Download gff for
BO11727.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10820733..10821905 | 17..1191 | 99 | | Plus |
BO11727.pep Sequence
Translation from 16 to 1207
> BO11727.pep
MRQLLVLLVLVGIGHSAAKLNRVQLQVNKNFTKTHGSVKAEKTVLASKYS
FLAETSFSVSSSGATENLHNSMNNEYYGVIAIGTPEQRFNILFDTGSANL
WVPSASCPASNTACQRHNKYDSSASSTYVANGEEFAIEYGTGSLSGFLSN
DIVTIAGISIQNQTFGEALSEPGTTFVDAPFAGILGLAFSAIAVDGVTPP
FDNMISQGLLDEPVISFYLKRQGTAVRGGELILGGIDSSLYRGSLTYVPV
SVPAYWQFKVNTIKTNGTLLCNGCQAIADTGTSLIAVPLAAYRKINRQLG
ATDNDGEAFVRCGRVSSLPKVNLNIGGTVFTLAPRDYIVKVTQNGQTYCM
SAFTYMEGLSFWILGDVFIGKFYTVFDKGNERIGFARVADYASFLDH
BO11727.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:48:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17134-PA | 391 | CG17134-PA | 1..391 | 1..391 | 2008 | 100 | Plus |
CG6508-PA | 423 | CG6508-PA | 7..393 | 4..394 | 1147 | 57.5 | Plus |
Bace-PB | 372 | CG13095-PB | 3..372 | 2..389 | 1023 | 54.4 | Plus |
Bace-PA | 372 | CG13095-PA | 3..372 | 2..389 | 1023 | 54.4 | Plus |
CG33128-PA | 405 | CG33128-PA | 1..405 | 1..389 | 1005 | 49.3 | Plus |