Clone BO11727 Report

Search the DGRC for BO11727

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:117
Well:27
Vector:pDNR-Dual
Associated Gene/TranscriptCG17134-RA
Protein status:BO11727.pep: validated full length
Sequenced Size:1207

Clone Sequence Records

BO11727.3prime Sequence

858 bp (824 high quality bases) assembled on 2006-04-20

> BO11727.3prime
ATGGTCTAGAAAGCTTGCATAATCCGCCACCCTGGCGAAACCAATCCTTT
CGTTGCCCTTGTCGAAAACCGTGTAGAACTTGCCAATAAAGACATCACCC
AGAATCCAGAAGCTTAGTCCCTCCATGTAGGTGAAGGCGGACATGCAGTA
GGTTTGGCCATTCTGCGTTACCTTGACTATATAATCCCTTGGTGCCAGGG
TGAAGACAGTACCACCGATATTCAGGTTGACCTTGGGCAGGGATGAGACT
CGGCCGCACCTCACGAATGCCTCACCGTCATTATCGGTGGCGCCCAGCTG
GCGATTGATCTTCCTGTAAGCGGCCAGTGGAACTGCGATTAAGGAGGTGC
CCGTATCGGCGATGGCTTGGCATCCGTTGCACAGCAAAGTGCCATTGGTC
TTGATGGTGTTCACCTTGAACTGCCAGTAGGCAGGAACGGAAACGGGCAC
ATAGGTGAGGCTTCCCCTATAGAGACTCGAGTCAATACCGCCCAGGATCA
GTTCTCCACCGCGCACAGCGGTTCCCTGTCGCTTGAGATAGAAGGAGATA
ACTGGTTCATCGAGCAGTCCCTGGGAGATCATGTTGTCGAACGGCGGAGT
CACTCCATCGACGGCAATCGCGCTGAAGGCCAGTCCCAGGATTCCAGCAA
AAGGAGCATCCACGAAGGTTGTACCCGGCTCGCTGAGTGCTTCGCCGAAT
GTCTGATTCTGAATGCTGATTCCCGCTATGGTCACAATGTCGTTGGACAG
GAAACCCGACAGACTACCAGTTCCGTATTCGATGGCGAACTCCTCACCAT
TGGCCACATAAGTGCTGGATGCCGAAGAATCGTATTTGTTGTGCCTCTGG
CACGCGGT

BO11727.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:29:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG17134-PA 1176 CG17134-RA 334..1173 858..19 4200 100 Minus
CG6508-PA 1272 CG6508-RA 802..839 381..344 140 94.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:13:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG17134-RA 1263 CG17134-RA 362..1201 858..19 4200 100 Minus
Bace-RB 1415 CG13095-RB 1034..1146 149..34 185 78.4 Minus
Bace-RA 1200 CG13095-RA 1034..1146 149..34 185 78.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:12:57
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10821066..10821905 858..19 4200 100 Minus
Blast to na_te.dros performed on 2015-02-10 16:13:01 has no hits.

BO11727.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:14:54 Download gff for BO11727.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17134-PA 334..1176 15..858 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:41:53 Download gff for BO11727.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17134-PA 334..1176 15..858 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:28:28 Download gff for BO11727.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17134-RA 362..1204 15..858 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:44:43 Download gff for BO11727.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17134-RA 362..1204 15..858 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:44:43 Download gff for BO11727.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10821066..10821908 15..858 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:28:28 Download gff for BO11727.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10821066..10821908 15..858 99   Minus

BO11727.5prime Sequence

843 bp (807 high quality bases) assembled on 2006-04-19

> BO11727.5prime
GAAGTTATCAGTCGACATGAGACAGTTGTTAGTTTTATTGGTGCTTGTCG
GGATTGGCCATTCCGCTGCCAAGTTGAATCGCGTCCAGCTCCAAGTGAAC
AAGAATTTCACCAAGACCCATGGCAGTGTTAAGGCCGAGAAGACCGTGCT
GGCATCGAAGTACTCCTTTTTGGCGGAGACCTCTTTCAGTGTCAGTTCGT
CGGGTGCCACCGAAAACCTGCACAATTCCATGAACAATGAGTACTACGGC
GTGATTGCTATCGGAACGCCTGAGCAGAGATTCAACATTCTGTTCGACAC
GGGATCGGCCAATCTGTGGGTTCCAAGTGCAAGTTGCCCGGCTTCGAATA
CCGCGTGCCAGAGGCACAACAAATACGATTCTTCGGCATCCAGCACTTAT
GTGGCCAATGGTGAGGAGTTCGCCATCGAATACGGAACTGGTAGTCTGTC
GGGTTTCCTGTCCAACGACATTGTGACCATAGCGGGAATCAGCATTCAGA
ATCAGACATTCGGCGAAGCACTCAGCGAGCCGGGTACAACCTTCGTGGAT
GCTCCTTTTGCTGGAATCCTGGGACTGGCCTTCAGCGCGATTGCCGTCGA
TGGAGTGACTCCGCCGTTCGACAACATGATCTCCCAGGGACTGCTCGATG
AACCAGTTATCTCCTTCTATCTCAAGCGACAGGGAACCGCTGTGCGCGGT
GGAGAACTGATCCTGGGCGGTATTGACTCGAGTCTCTATAGGGGAAGCCT
CACCTATGTGCCCGTTTCCGTTCCTGCCTACTGGCAGTTCAAGGTGAACA
CCATCAAGACCAATGGCACTTTGCTGTGCAACGGATGCCAAGC

BO11727.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:29:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG17134-PA 1176 CG17134-RA 1..827 17..843 4135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:10:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG17134-RA 1263 CG17134-RA 26..855 14..843 4150 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:10:21
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10820730..10821559 14..843 4150 100 Plus
Blast to na_te.dros performed on 2015-02-12 05:10:25 has no hits.

BO11727.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:14:55 Download gff for BO11727.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17134-PA 1..827 17..843 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:41:54 Download gff for BO11727.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17134-PA 1..827 17..843 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:51:20 Download gff for BO11727.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17134-RA 26..855 14..843 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:56:25 Download gff for BO11727.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17134-RA 26..855 14..843 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:56:25 Download gff for BO11727.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10820730..10821559 14..843 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:51:20 Download gff for BO11727.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10820730..10821559 14..843 100   Plus

BO11727.complete Sequence

1207 bp assembled on 2006-10-11

GenBank Submission: FJ632170

> BO11727.complete
GAAGTTATCAGTCGACATGAGACAGTTGTTAGTTTTATTGGTGCTTGTCG
GGATTGGCCATTCCGCTGCCAAGTTGAATCGCGTCCAGCTCCAAGTGAAC
AAGAATTTCACCAAGACCCATGGCAGTGTTAAGGCCGAGAAGACCGTGCT
GGCATCGAAGTACTCCTTTTTGGCGGAGACCTCTTTCAGTGTCAGTTCGT
CGGGTGCCACCGAAAACCTGCACAATTCCATGAACAATGAGTACTACGGC
GTGATTGCTATCGGAACGCCTGAGCAGAGATTCAACATTCTGTTCGACAC
GGGATCGGCCAATCTGTGGGTTCCAAGTGCAAGTTGCCCGGCTTCGAATA
CCGCGTGCCAGAGGCACAACAAATACGATTCTTCGGCATCCAGCACTTAT
GTGGCCAATGGTGAGGAGTTCGCCATCGAATACGGAACTGGTAGTCTGTC
GGGTTTCCTGTCCAACGACATTGTGACCATAGCGGGAATCAGCATTCAGA
ATCAGACATTCGGCGAAGCACTCAGCGAGCCGGGTACAACCTTCGTGGAT
GCTCCTTTTGCTGGAATCCTGGGACTGGCCTTCAGCGCGATTGCCGTCGA
TGGAGTGACTCCGCCGTTCGACAACATGATCTCCCAGGGACTGCTCGATG
AACCAGTTATCTCCTTCTATCTCAAGCGACAGGGAACCGCTGTGCGCGGT
GGAGAACTGATCCTGGGCGGTATTGACTCGAGTCTCTATAGGGGAAGCCT
CACCTATGTGCCCGTTTCCGTTCCTGCCTACTGGCAGTTCAAGGTGAACA
CCATCAAGACCAATGGCACTTTGCTGTGCAACGGATGCCAAGCCATCGCC
GATACGGGCACCTCCTTAATCGCAGTTCCACTGGCCGCTTACAGGAAGAT
CAATCGCCAGCTGGGCGCCACCGATAATGACGGTGAGGCATTCGTGAGGT
GCGGCCGAGTCTCATCCCTGCCCAAGGTCAACCTGAATATCGGTGGTACT
GTCTTCACCCTGGCACCAAGGGATTATATAGTCAAGGTAACGCAGAATGG
CCAAACCTACTGCATGTCCGCCTTCACCTACATGGAGGGACTAAGCTTCT
GGATTCTGGGTGATGTCTTTATTGGCAAGTTCTACACGGTTTTCGACAAG
GGCAACGAAAGGATTGGTTTCGCCAGGGTGGCGGATTATGCAAGCTTTCT
AGACCAT

BO11727.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:37:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG17134-RA 1176 CG17134-PA 1..1173 17..1189 5865 100 Plus
CG6508-RA 1272 CG6508-PA 802..858 827..883 180 87.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:37:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG17134-RA 1263 CG17134-RA 26..1201 14..1189 5880 100 Plus
CG6508-RA 1379 CG6508-RA 818..874 827..883 180 87.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:37:00
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10820730..10821905 14..1189 5880 100 Plus
Blast to na_te.dros performed on 2014-11-27 19:37:01 has no hits.

BO11727.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:49:59 Download gff for BO11727.complete
Subject Subject Range Query Range Percent Splice Strand
CG17134-RA 1..1176 17..1193 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:05:05 Download gff for BO11727.complete
Subject Subject Range Query Range Percent Splice Strand
CG17134-RA 21..1199 14..1193 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:14 Download gff for BO11727.complete
Subject Subject Range Query Range Percent Splice Strand
CG17134-RA 29..1201 17..1191 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:49:59 Download gff for BO11727.complete
Subject Subject Range Query Range Percent Splice Strand
CG17134-RA 21..1199 14..1193 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:05:00 Download gff for BO11727.complete
Subject Subject Range Query Range Percent Splice Strand
CG17134-RA 29..1201 17..1191 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:05:00 Download gff for BO11727.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10820733..10821905 17..1191 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:14 Download gff for BO11727.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10820733..10821905 17..1191 99   Plus

BO11727.pep Sequence

Translation from 16 to 1207

> BO11727.pep
MRQLLVLLVLVGIGHSAAKLNRVQLQVNKNFTKTHGSVKAEKTVLASKYS
FLAETSFSVSSSGATENLHNSMNNEYYGVIAIGTPEQRFNILFDTGSANL
WVPSASCPASNTACQRHNKYDSSASSTYVANGEEFAIEYGTGSLSGFLSN
DIVTIAGISIQNQTFGEALSEPGTTFVDAPFAGILGLAFSAIAVDGVTPP
FDNMISQGLLDEPVISFYLKRQGTAVRGGELILGGIDSSLYRGSLTYVPV
SVPAYWQFKVNTIKTNGTLLCNGCQAIADTGTSLIAVPLAAYRKINRQLG
ATDNDGEAFVRCGRVSSLPKVNLNIGGTVFTLAPRDYIVKVTQNGQTYCM
SAFTYMEGLSFWILGDVFIGKFYTVFDKGNERIGFARVADYASFLDH

BO11727.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:48:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG17134-PA 391 CG17134-PA 1..391 1..391 2008 100 Plus
CG6508-PA 423 CG6508-PA 7..393 4..394 1147 57.5 Plus
Bace-PB 372 CG13095-PB 3..372 2..389 1023 54.4 Plus
Bace-PA 372 CG13095-PA 3..372 2..389 1023 54.4 Plus
CG33128-PA 405 CG33128-PA 1..405 1..389 1005 49.3 Plus