Clone Sequence Records
BO11731.3prime Sequence
964 bp (840 high quality bases) assembled on 2006-04-20
> BO11731.3prime
ATGGTCTAGAAAGCTTGCATTCTTCTTGGTCTTCTTCTTCGTCGGAGTGC
TCTTCGGCTTGGAGCTCCTGCGGCAGATCAGGATTAGAACTACGATTGGC
AACAGGATCACAGCGAGACCTAGACCCACAATGTCCAGTAGGTAGAACTG
GTACCAGGGTAGATGTACACCAGCGGCCACCAGATGAGGAGCACCTCGGT
GCTCGATCACATAGTTGATCCAATATATGGCCGTATCCATGGCACCGAGT
GGTCGATCGCGGAATATCCGGGAGGCCTTCTTAATGTTATTCCTATACTT
TGGATTCTCAATCAGTTCCATCAGCAGACCTCGCAACTCCTCCACCGTGA
CTTTCCGGTAATCCAGTCCCAGTGCATATTCTGCACTCTTACCCTGGTTA
ATGTTCTGATGCTGATCACAGTAGACTGGCATTCCCAATATGGGAACACC
ATTGTACACCGCCTCCTGGGTGCCGAAGAGTCCTCCATGGGCAATGAAAA
CCTTGACATTCGGGTGCGCCAGAATGTCGCCCTGAGGTAACCAACTTTGC
ACCTTAACGTTAGCCGGCAAATTGGGCAGAGATTCATCTTCGAATTTCCA
GAGAACGCGTTGCTTCAGACTGCCAAAGACTTCCAGGAATACTTTGAGCT
TCTCAGGCGGCAAGTCGGCACTTCTCACCTGGGAACCCAAGCTAAAGTAA
ATGGCACCATGTGTGGCTCCGTCCAGGAATTTTTGTAGATGCTCCGGTAG
TGCCTTCGGTGGTTGAATGTGCAAACCGCCCACTGGGATCATATTATATG
CCATCGGTCTCGAAGATGCCAGTGGCATGTAGCTGTTCAACAGAATGGCT
GAGATATTACGTTCGAGTTCTTTGATGGTCGGTACTCTGTCGAGTAGCTT
GGAGAAGTGCTTCTTTTAAGACCGCATCCTGACCGGGGTAGTAGGAGAAC
TCTCTGACGAGATC
BO11731.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:29:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4302-PA | 1599 | CG4302-RA | 699..1596 | 916..19 | 4490 | 100 | Minus |
CG4302-PA | 1599 | CG4302-RA | 652..701 | 964..915 | 250 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:55:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4302-RA | 1754 | CG4302-RA | 719..1663 | 964..19 | 4705 | 99.9 | Minus |
CG6475-RD | 1683 | CG6475-RD | 765..1213 | 846..398 | 460 | 74.3 | Minus |
CG6475-RD | 1683 | CG6475-RD | 1331..1477 | 280..134 | 255 | 78.2 | Minus |
CG15661-RB | 1899 | CG15661-RB | 1237..1427 | 600..410 | 215 | 75.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:55:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21212971..21213639 | 19..687 | 3345 | 100 | Plus |
2R | 25286936 | 2R | 21213704..21213982 | 685..964 | 1350 | 99.6 | Plus |
3R | 32079331 | 3R | 21398251..21398525 | 398..672 | 370 | 75.6 | Plus |
3R | 32079331 | 3R | 21397987..21398133 | 134..280 | 255 | 78.2 | Plus |
2R | 25286936 | 2R | 21215971..21216093 | 412..534 | 195 | 77.2 | Plus |
Blast to na_te.dros performed on 2015-02-03 07:55:52 has no hits.
BO11731.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:15:01 Download gff for
BO11731.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4302-PA | 652..1599 | 18..964 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:42:02 Download gff for
BO11731.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4302-PA | 652..1599 | 18..964 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:35:31 Download gff for
BO11731.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4302-RA | 719..1663 | 19..964 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:50:20 Download gff for
BO11731.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4302-RA | 719..1663 | 19..964 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:50:20 Download gff for
BO11731.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21212971..21213638 | 19..686 | 100 | <- | Plus |
2R | 21213706..21213982 | 687..964 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:35:31 Download gff for
BO11731.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17100476..17101143 | 19..686 | 100 | <- | Plus |
arm_2R | 17101211..17101487 | 687..964 | 99 | | Plus |
BO11731.5prime Sequence
912 bp (868 high quality bases) assembled on 2006-04-19
> BO11731.5prime
GAAGTTATCAGTCGACATGTCTTTGAAAAGTGCTCTGCACATATTTCTCC
TAAGTCTGGTTGCTCTTCAGCAACTAGAGTTGGGTACCGGTTCCCGCATC
TTGGCAGCATTCTTTTTTCCTGGCAAGAGTCACTTCATGATGACCAATGC
CATCATACGGGAGCTGGTGAAGCAAGGACATGAGGTTACTTTTATTACTC
CGTTTTCCTTGGCCAAGGAAAAACTTGGATCAAATTATAAGGAAATTGTG
ATTCCTCAATACGATTTTTGGCCAGAAATTAAGGAGATGACCAATAAGAA
CACCGTTTTGGAAATGACAGATTTGCCAACTTTTGCATTCCTGCGAATGG
TCAATGTGATGGGTATCCACACCACGGATTTCGCACTGGAACAACCGGAG
ATTCAGGCAGTAATCAATGAGAAGAACAAAATTGGCAAATACGATCTGCT
GCTGGCGGAGCAGTTCTTCAACGAGGGTGCCCTCATCCTGGGACACTTGT
ACCAGATCCCAACCATAACTATTTCGACATTTGGTAATGCCAACCACCTT
AGTCAGCTATTTGGGGTAGTGTCTCCTTGGTCATATGTACCACACGCTTA
TATGCCCTATACGGATCGCATGACTTTGTGGGAACGCATCGGCAATGTGG
CCATGAGTGCAGCCGAGGATCTCGTCAGAGAGTTCTCCTACTACCCCGGT
CAGGATGCGGTCTTAAAGAAGCACTTCTCCAAGCTACTCGACAGAGTACC
GACCATCAAAGAACTCGAACGTAATATCTCAGCCATTCTGTTGAACAGCT
ACATGCCACTGGCATCTTCGAGACCGATGGCATATAATATGATCCCAGTG
GGCGGTTTGCACATTCAACCACCGAAGGCACTACCGGAGCATCTACAAAA
ATTCCTGGACGG
BO11731.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:29:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4302-PA | 1599 | CG4302-RA | 1..896 | 17..912 | 4480 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:52:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4302-RA | 1754 | CG4302-RA | 68..963 | 17..912 | 4480 | 100 | Plus |
CG6475-RD | 1683 | CG6475-RD | 81..207 | 101..228 | 225 | 78.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:52:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21213738..21214371 | 912..279 | 3170 | 100 | Minus |
2R | 25286936 | 2R | 21214427..21214686 | 278..19 | 1300 | 100 | Minus |
3R | 32079331 | 3R | 21399433..21399554 | 222..101 | 220 | 78.7 | Minus |
Blast to na_te.dros performed 2015-02-13 09:52:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy8 | 4955 | gypsy8 GYPSY8 4955bp | 726..808 | 125..43 | 135 | 65.5 | Minus |
BO11731.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:15:02 Download gff for
BO11731.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4302-PA | 1..896 | 17..912 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:42:03 Download gff for
BO11731.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4302-PA | 1..896 | 17..912 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:47:00 Download gff for
BO11731.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4302-RA | 57..963 | 4..912 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:22:55 Download gff for
BO11731.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4302-RA | 57..963 | 4..912 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:22:55 Download gff for
BO11731.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21213738..21214371 | 279..912 | 100 | <- | Minus |
2R | 21214427..21214695 | 9..278 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:47:00 Download gff for
BO11731.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17101243..17101876 | 279..912 | 100 | <- | Minus |
arm_2R | 17101932..17102200 | 9..278 | 98 | | Minus |
BO11731.complete Sequence
1630 bp assembled on 2006-10-11
GenBank Submission: FJ632171
> BO11731.complete
GAAGTTATCAGTCGACATGTCTTTGAAAAGTGCTCTGCACATATTTCTCC
TAAGTCTGGTTGCTCTTCAGCAACTAGAGTTGGGTACCGGTTCCCGCATC
TTGGCAGCATTCTTTTTTCCTGGCAAGAGTCACTTCATGATGACCAATGC
CATCATACGGGAGCTGGTGAAGCAAGGACATGAGGTTACTTTTATTACTC
CGTTTTCCTTGGCCAAGGAAAAACTTGGATCAAATTATAAGGAAATTGTG
ATTCCTCAATACGATTTTTGGCCAGAAATTAAGGAGATGACCAATAAGAA
CACCGTTTTGGAAATGACAGATTTGCCAACTTTTGCATTCCTGCGAATGG
TCAATGTGATGGGTATCCACACCACGGATTTCGCACTGGAACAACCGGAG
ATTCAGGCAGTAATCAATGAGAAGAACAAAATTGGCAAATACGATCTGCT
GCTGGCGGAGCAGTTCTTCAACGAGGGTGCCCTCATCCTGGGACACTTGT
ACCAGATCCCAACCATAACTATTTCGACATTTGGTAATGCCAACCACCTT
AGTCAGCTATTTGGGGTAGTGTCTCCTTGGTCATATGTACCACACGCTTA
TATGCCCTATACGGATCGCATGACTTTGTGGGAACGCATCGGCAATGTGG
CCATGAGTGCAGCCGAGGATCTCGTCAGAGAGTTCTCCTACTACCCCGGT
CAGGATGCGGTCTTAAAGAAGCACTTCTCCAAGCTACTCGACAGAGTACC
GACCATCAAAGAACTCGAACGTAATATCTCAGCCATTCTGTTGAACAGCT
ACATGCCACTGGCATCTTCGAGACCGATGGCATATAATATGATCCCAGTG
GGCGGTTTGCACATTCAACCACCGAAGGCACTACCGGAGCATCTACAAAA
ATTCCTGGACGGAGCCACACATGGTGCCATTTACTTTAGCTTGGGTTCCC
AGGTGAGAAGTGCCGACTTGCCGCCTGAGAAGCTCAAAGTATTCCTGGAA
GTCTTTGGCAGTCTGAAGCAACGCGTTCTCTGGAAATTCGAAGATGAATC
TCTGCCCAATTTGCCGGCTAACGTTAAGGTGCAAAGTTGGTTACCTCAGG
GCGACATTCTGGCGCACCCGAATGTCAAGGTTTTCATTGCCCATGGAGGA
CTCTTCGGCACCCAGGAGGCGGTGTACAATGGTGTTCCCATATTGGGAAT
GCCAGTCTACTGTGATCAGCATCAGAACATTAACCAGGGTAAGAGTGCAG
AATATGCACTGGGACTGGATTACCGGAAAGTCACGGTGGAGGAGTTGCGA
GGTCTGCTGATGGAACTGATTGAGAATCCAAAGTATAGGAATAACATTAA
GAAGGCCTCCCGGATATTCCGCGATCGACCACTCGGTGCCATGGATACGG
CCATATATTGGATCAACTATGTGATCGAGCACCGAGGTGCTCCTCATCTG
GTGGCCGCTGGTGTACATCTACCCTGGTACCAGTTCTACCTACTGGACAT
TGTGGGTCTAGGTCTCGCTGTGATCCTGTTGCCAATCGTAGTTCTAATCC
TGATCTGCCGCAGGAGCTCCAAGCCGAAGAGCACTCCGACGAAGAAGAAG
ACCAAGAAGAATGCAAGCTTTCTAGACCAT
BO11731.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:00:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4302-RA | 1599 | CG4302-PA | 1..1596 | 17..1612 | 7980 | 100 | Plus |
CG6475-RD | 1581 | CG6475-PD | 748..1196 | 785..1233 | 460 | 73.5 | Plus |
CG6475-RD | 1581 | CG6475-PD | 1314..1460 | 1351..1497 | 255 | 78.2 | Plus |
CG6475-RD | 1581 | CG6475-PD | 64..185 | 101..222 | 220 | 78.7 | Plus |
CG15661-RB | 1593 | CG15661-PB | 1081..1205 | 1097..1221 | 205 | 77.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:00:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4302-RA | 1754 | CG4302-RA | 68..1663 | 17..1612 | 7980 | 100 | Plus |
CG6475-RD | 1683 | CG6475-RD | 765..1213 | 785..1233 | 460 | 73.5 | Plus |
CG6475-RD | 1683 | CG6475-RD | 1331..1477 | 1351..1497 | 255 | 78.2 | Plus |
CG6475-RD | 1683 | CG6475-RD | 81..202 | 101..222 | 220 | 78.7 | Plus |
CG15661-RB | 1899 | CG15661-RB | 1303..1427 | 1097..1221 | 205 | 77.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:00:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21212971..21213639 | 1612..944 | 3345 | 100 | Minus |
2R | 25286936 | 2R | 21213704..21214371 | 946..279 | 3340 | 100 | Minus |
2R | 25286936 | 2R | 21214427..21214686 | 278..19 | 1300 | 100 | Minus |
3R | 32079331 | 3R | 21398251..21398525 | 1233..959 | 370 | 75.6 | Minus |
3R | 32079331 | 3R | 21397987..21398133 | 1497..1351 | 255 | 78.2 | Minus |
3R | 32079331 | 3R | 21399433..21399554 | 222..101 | 220 | 78.7 | Minus |
2R | 25286936 | 2R | 21215971..21216093 | 1219..1097 | 195 | 77.2 | Minus |
Blast to na_te.dros performed 2014-11-27 10:00:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy8 | 4955 | gypsy8 GYPSY8 4955bp | 726..808 | 125..43 | 135 | 65.5 | Minus |
BO11731.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:49:47 Download gff for
BO11731.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4302-RA | 1..1599 | 17..1613 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:04:53 Download gff for
BO11731.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4302-RA | 53..1659 | 4..1612 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:14:47 Download gff for
BO11731.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4302-RA | 68..1663 | 17..1614 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:49:48 Download gff for
BO11731.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4302-RA | 53..1659 | 4..1612 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:10:41 Download gff for
BO11731.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4302-RA | 68..1663 | 17..1614 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:10:41 Download gff for
BO11731.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21214427..21214687 | 17..278 | 99 | | Minus |
2R | 21212969..21213638 | 945..1614 | 99 | <- | Minus |
2R | 21213706..21214371 | 279..944 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:14:47 Download gff for
BO11731.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17100474..17101143 | 945..1614 | 99 | <- | Minus |
arm_2R | 17101211..17101876 | 279..944 | 100 | <- | Minus |
arm_2R | 17101932..17102192 | 17..278 | 99 | | Minus |
BO11731.pep Sequence
Translation from 16 to 1630
> BO11731.pep
MSLKSALHIFLLSLVALQQLELGTGSRILAAFFFPGKSHFMMTNAIIREL
VKQGHEVTFITPFSLAKEKLGSNYKEIVIPQYDFWPEIKEMTNKNTVLEM
TDLPTFAFLRMVNVMGIHTTDFALEQPEIQAVINEKNKIGKYDLLLAEQF
FNEGALILGHLYQIPTITISTFGNANHLSQLFGVVSPWSYVPHAYMPYTD
RMTLWERIGNVAMSAAEDLVREFSYYPGQDAVLKKHFSKLLDRVPTIKEL
ERNISAILLNSYMPLASSRPMAYNMIPVGGLHIQPPKALPEHLQKFLDGA
THGAIYFSLGSQVRSADLPPEKLKVFLEVFGSLKQRVLWKFEDESLPNLP
ANVKVQSWLPQGDILAHPNVKVFIAHGGLFGTQEAVYNGVPILGMPVYCD
QHQNINQGKSAEYALGLDYRKVTVEELRGLLMELIENPKYRNNIKKASRI
FRDRPLGAMDTAIYWINYVIEHRGAPHLVAAGVHLPWYQFYLLDIVGLGL
AVILLPIVVLILICRRSSKPKSTPTKKKTKKNASFLDH
BO11731.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:48:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4302-PA | 532 | CG4302-PA | 1..532 | 1..532 | 2764 | 100 | Plus |
CG6475-PD | 526 | CG6475-PD | 2..524 | 9..531 | 1801 | 64.2 | Plus |
CG15661-PB | 530 | CG15661-PB | 10..515 | 11..515 | 1449 | 53.4 | Plus |
CG15661-PA | 530 | CG15661-PA | 10..515 | 11..515 | 1449 | 53.4 | Plus |
CG10178-PB | 530 | CG10178-PB | 13..512 | 9..519 | 1005 | 40.4 | Plus |