Clone BO11734 Report

Search the DGRC for BO11734

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:117
Well:34
Vector:pDNR-Dual
Associated Gene/TranscriptAct5C-RA
Protein status:BO11734.pep: validated full length
Sequenced Size:1162

Clone Sequence Records

BO11734.3prime Sequence

873 bp (801 high quality bases) assembled on 2006-04-19

> BO11734.3prime
ATGGTCTAGAAAGCTTGCGAAGCACTTGCGGTGCACAATGGAGGGGCCGG
ACTCGTCGTACTCCTGCTTGGAGATCCACATCTGCTGGAAGGTGGACAGC
GAAGCCAGGATGGAGCCACCGATCCAGACAGAGTACTTGCGCTCTGGCGG
GGCAATGATCTTGATCTTCATGGTCGACGGTGCCAGGGCGGTGATCTCCT
TCTGCATACGGTCGGCGATGCCAGGGTACATGGTGGTGCCACCGGACAGC
ACGGTGTTGGCATACAGATCCTTACGGATATCCACATCACACTTCATGAT
GGAGTTGTAGGTGGTCTCGTGGATGCCGCAAGCCTCCATTCCCAAGAACG
AGGGCTGGAACAGGGCCTCGGGGCAGCGGAAACGCTCGTTGCCGATGGTG
ATCACCTGTCCGTCGGGCAGCTCGTAGGACTTCTCCAACGAGGAGCTGCT
GGCAGCGGTGGCCATCTCCTGCTCAAAGTCGAGGGCAACATAGCACAGCT
TCTCCTTGATGTCACGGACGATTTCACGCTCAGCGGTGGTGGTGAAAGAG
TAACCGCGCTCGGTCAGGATCTTCATCAGGTAGTCGGTCAAATCGCGACC
AGCCAGATCCAGACGCAGGATGGCATGGGGAAGGGCATAACCCTCGTAGA
TGGGCACGGTGTGGGAGACACCATCGCCGGAGTCCAGAACGATACCGGTG
GTACGACCGGAGGCGTACAGCGAGAGCACAGCCTGGATGGCCACATACAT
GGCGGGTGTGTTGAAGGTCTCGAACATGATCTGGGTCATCTTCTCACGGT
TGGCCTTGGGGTTCAGCGGGGCCTCGGTCAGCAGCACGGGGTGCTCCTCG
GGTGCCACACGCAGCTCATTGTA

BO11734.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:29:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG4027-PB 1131 Act5C-RB 274..1128 873..19 4275 100 Minus
CG4027-PA 1131 Act5C-RA 274..1128 873..19 4275 100 Minus
CG4027-PC 1131 Act5C-RC 274..1128 873..19 4275 100 Minus
CG4027-PD 1131 Act5C-RD 274..1128 873..19 4275 100 Minus
CG18290-PA 1131 Act87E-RA 295..692 852..455 1540 95.4 Minus
CG18290-PB 1131 Act87E-RB 295..692 852..455 1540 95.4 Minus
CG10067-PA 1131 Act57B-RA 274..692 873..455 1445 93.7 Minus
CG7478-PA 1131 Act79B-RA 274..593 873..554 900 91.2 Minus
CG10067-PA 1131 Act57B-RA 817..1103 330..44 835 91.6 Minus
CG18290-PA 1131 Act87E-RA 838..1103 309..44 830 92.4 Minus
CG18290-PB 1131 Act87E-RB 838..1103 309..44 830 92.4 Minus
CG12051-PA 1131 Act42A-RA 784..1128 363..19 800 89.2 Minus
CG5178-PA 1131 Act88F-RA 704..995 443..152 710 89.7 Minus
CG7478-PA 1131 Act79B-RA 844..1100 303..47 685 90.6 Minus
CG5178-PA 1131 Act88F-RA 317..506 830..641 625 93.1 Minus
CG12051-PA 1131 Act42A-RA 332..597 815..550 430 86.4 Minus
CG5178-PA 1131 Act88F-RA 1009..1104 138..43 405 96.8 Minus
CG10067-PA 1131 Act57B-RA 710..812 437..335 340 93.2 Minus
CG18290-PA 1131 Act87E-RA 710..812 437..335 315 92.2 Minus
CG18290-PB 1131 Act87E-RB 710..812 437..335 315 92.2 Minus
CG7478-PA 1131 Act79B-RA 710..834 437..313 275 88.8 Minus
CG5178-PA 1131 Act88F-RA 511..593 636..554 265 92.7 Minus
CG5178-PA 1131 Act88F-RA 601..696 546..451 255 90.6 Minus
CG12051-PA 1131 Act42A-RA 601..689 546..458 220 89.8 Minus
CG7478-PA 1131 Act79B-RA 634..689 513..458 180 92.8 Minus
CG12051-PA 1131 Act42A-RA 710..779 437..368 150 88.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 03:46:03
Subject Length Description Subject Range Query Range Score Percent Strand
Act5C-RE 2863 CG4027-RE 435..1289 873..19 4275 100 Minus
Act5C-RD 1928 CG4027-RD 435..1289 873..19 4275 100 Minus
Act5C-RC 2252 CG4027-RC 435..1289 873..19 4275 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 03:45:55
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5902971..5903825 873..19 4275 100 Minus
3R 32079331 3R 13426883..13427731 867..19 3195 91.8 Minus
2R 25286936 2R 20945077..20945931 873..19 3180 91.5 Minus
3R 32079331 3R 15440889..15441541 873..221 2185 89 Minus
3R 32079331 3R 15441607..15441803 216..20 700 90.4 Minus
Blast to na_te.dros performed on 2015-02-09 03:45:59 has no hits.

BO11734.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:15:07 Download gff for BO11734.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4027-PD 275..1131 15..872 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:42:09 Download gff for BO11734.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4027-PC 275..1131 15..872 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 07:58:06 Download gff for BO11734.3prime
Subject Subject Range Query Range Percent Splice Strand
Act5C-RA 436..1293 14..872 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 05:28:54 Download gff for BO11734.3prime
Subject Subject Range Query Range Percent Splice Strand
Act5C-RC 436..1293 14..872 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 05:28:54 Download gff for BO11734.3prime
Subject Subject Range Query Range Percent Splice Strand
X 5902972..5903829 14..872 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 07:58:06 Download gff for BO11734.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5797005..5797862 14..872 99   Minus

BO11734.5prime Sequence

821 bp (788 high quality bases) assembled on 2006-04-19

> BO11734.5prime
GAAGTTATCAGTCGACATGTGTGACGAAGAAGTTGCTGCTCTGGTTGTCG
ACAACGGCTCTGGCATGTGCAAGGCCGGATTTGCCGGAGACGATGCTCCC
CGCGCCGTCTTCCCATCGATTGTGGGACGTCCCCGTCACCAGGGTGTGAT
GGTCGGCATGGGCCAGAAGGACTCGTACGTGGGTGATGAGGCGCAGAGCA
AGCGTGGTATCCTCACCCTGAAGTACCCCATTGAGCACGGTATCGTGACC
AACTGGGACGATATGGAGAAGATCTGGCACCACACCTTCTACAATGAGCT
GCGTGTGGCACCCGAGGAGCACCCCGTGCTGCTGACCGAGGCCCCGCTGA
ACCCCAAGGCCAACCGTGAGAAGATGACCCAGATCATGTTCGAGACCTTC
AACACACCCGCCATGTATGTGGCCATCCAGGCTGTGCTCTCGCTGTACGC
CTCCGGTCGTACCACCGGTATCGTTCTGGACTCCGGCGATGGTGTCTCCC
ACACCGTGCCCATCTACGAGGGTTATGCCCTTCCCCATGCCATCCTGCGT
CTGGATCTGGCTGGTCGCGATTTGACCGACTACCTGATGAAGATCCTGAC
CGAGCGCGGTTACTCTTTCACCACCACCGCTGAGCGTGAAATCGTCCGTG
ACATCAAGGAGAAGCTGTGCTATGTTGCCCTCGACTTTGAGCAGGAGATG
GCCACCGCTGCCAGCAGCTCCTCGTTGGAGAAGTCCTACGAGCTGCCCGA
CGGACAGGTGATCACCATCGGCAACGAGCGTTTCCGCTGCCCCGAGGCCC
TGTTCCAGCCCTCGTTCTTGG

BO11734.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:29:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG4027-PB 1131 Act5C-RB 1..805 17..821 4025 100 Plus
CG4027-PA 1131 Act5C-RA 1..805 17..821 4025 100 Plus
CG4027-PC 1131 Act5C-RC 1..805 17..821 4025 100 Plus
CG4027-PD 1131 Act5C-RD 1..805 17..821 4025 100 Plus
CG18290-PA 1131 Act87E-RA 49..692 65..708 2095 93 Plus
CG18290-PB 1131 Act87E-RB 49..692 65..708 2095 93 Plus
CG10067-PA 1131 Act57B-RA 121..692 137..708 1960 93.7 Plus
CG7478-PA 1131 Act79B-RA 232..593 248..609 1035 91.4 Plus
CG5178-PA 1131 Act88F-RA 317..506 333..522 625 93.1 Plus
CG5178-PA 1131 Act88F-RA 32..305 48..321 545 87.9 Plus
CG12051-PA 1131 Act42A-RA 112..311 128..327 450 89 Plus
CG12051-PA 1131 Act42A-RA 332..597 348..613 430 86.4 Plus
CG7478-PA 1131 Act79B-RA 34..197 50..213 370 89 Plus
CG10067-PA 1131 Act57B-RA 710..794 726..810 325 95.2 Plus
CG18290-PA 1131 Act87E-RA 710..797 726..813 290 93.1 Plus
CG18290-PB 1131 Act87E-RB 710..797 726..813 290 93.1 Plus
CG5178-PA 1131 Act88F-RA 704..801 720..817 290 91.8 Plus
CG5178-PA 1131 Act88F-RA 511..593 527..609 265 92.7 Plus
CG5178-PA 1131 Act88F-RA 601..696 617..712 255 90.6 Plus
CG12051-PA 1131 Act42A-RA 601..689 617..705 220 89.8 Plus
CG10067-PA 1131 Act57B-RA 1..98 17..114 215 88.7 Plus
CG7478-PA 1131 Act79B-RA 710..801 726..817 210 89.1 Plus
CG7478-PA 1131 Act79B-RA 634..689 650..705 180 92.8 Plus
CG12051-PA 1131 Act42A-RA 710..779 726..795 150 88.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:34:36
Subject Length Description Subject Range Query Range Score Percent Strand
Act5C-RE 2863 CG4027-RE 162..966 17..821 4025 100 Plus
Act5C-RD 1928 CG4027-RD 162..966 17..821 4025 100 Plus
Act5C-RC 2252 CG4027-RC 162..966 17..821 4025 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:34:31
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5902698..5903502 17..821 4025 100 Plus
3R 32079331 3R 13426604..13427408 17..821 2930 90.9 Plus
2R 25286936 2R 20944843..20945608 56..821 2855 91.5 Plus
3R 32079331 3R 15440616..15441420 17..821 2570 88 Plus
Blast to na_te.dros performed on 2015-02-11 10:34:34 has no hits.

BO11734.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:15:08 Download gff for BO11734.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4027-PC 1..805 17..821 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:42:10 Download gff for BO11734.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4027-PC 1..805 17..821 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 03:07:15 Download gff for BO11734.5prime
Subject Subject Range Query Range Percent Splice Strand
Act5C-RA 162..966 17..821 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:35:58 Download gff for BO11734.5prime
Subject Subject Range Query Range Percent Splice Strand
Act5C-RC 162..966 17..821 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:35:58 Download gff for BO11734.5prime
Subject Subject Range Query Range Percent Splice Strand
X 5902698..5903502 17..821 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 03:07:15 Download gff for BO11734.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5796731..5797535 17..821 100   Plus

BO11734.complete Sequence

1162 bp assembled on 2006-10-11

GenBank Submission: FJ632172

> BO11734.complete
GAAGTTATCAGTCGACATGTGTGACGAAGAAGTTGCTGCTCTGGTTGTCG
ACAACGGCTCTGGCATGTGCAAGGCCGGATTTGCCGGAGACGATGCTCCC
CGCGCCGTCTTCCCATCGATTGTGGGACGTCCCCGTCACCAGGGTGTGAT
GGTCGGCATGGGCCAGAAGGACTCGTACGTGGGTGATGAGGCGCAGAGCA
AGCGTGGTATCCTCACCCTGAAGTACCCCATTGAGCACGGTATCGTGACC
AACTGGGACGATATGGAGAAGATCTGGCACCACACCTTCTACAATGAGCT
GCGTGTGGCACCCGAGGAGCACCCCGTGCTGCTGACCGAGGCCCCGCTGA
ACCCCAAGGCCAACCGTGAGAAGATGACCCAGATCATGTTCGAGACCTTC
AACACACCCGCCATGTATGTGGCCATCCAGGCTGTGCTCTCGCTGTACGC
CTCCGGTCGTACCACCGGTATCGTTCTGGACTCCGGCGATGGTGTCTCCC
ACACCGTGCCCATCTACGAGGGTTATGCCCTTCCCCATGCCATCCTGCGT
CTGGATCTGGCTGGTCGCGATTTGACCGACTACCTGATGAAGATCCTGAC
CGAGCGCGGTTACTCTTTCACCACCACCGCTGAGCGTGAAATCGTCCGTG
ACATCAAGGAGAAGCTGTGCTATGTTGCCCTCGACTTTGAGCAGGAGATG
GCCACCGCTGCCAGCAGCTCCTCGTTGGAGAAGTCCTACGAGCTGCCCGA
CGGACAGGTGATCACCATCGGCAACGAGCGTTTCCGCTGCCCCGAGGCCC
TGTTCCAGCCCTCGTTCTTGGGAATGGAGGCTTGCGGCATCCACGAGACC
ACCTACAACTCCATCATGAAGTGTGATGTGGATATCCGTAAGGATCTGTA
TGCCAACACCGTGCTGTCCGGTGGCACCACCATGTACCCTGGCATCGCCG
ACCGTATGCAGAAGGAGATCACCGCCCTGGCACCGTCGACCATGAAGATC
AAGATCATTGCCCCGCCAGAGCGCAAGTACTCTGTCTGGATCGGTGGCTC
CATCCTGGCTTCGCTGTCCACCTTCCAGCAGATGTGGATCTCCAAGCAGG
AGTACGACGAGTCCGGCCCCTCCATTGTGCACCGCAAGTGCTTCGCAAGC
TTTCTAGACCAT

BO11734.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:37:58
Subject Length Description Subject Range Query Range Score Percent Strand
Act5C-RE 1131 CG4027-PE 1..1128 17..1144 5640 100 Plus
Act5C-RD 1131 CG4027-PD 1..1128 17..1144 5640 100 Plus
Act5C-RC 1131 CG4027-PC 1..1128 17..1144 5640 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:38:00
Subject Length Description Subject Range Query Range Score Percent Strand
Act5C-RE 2863 CG4027-RE 162..1289 17..1144 5640 100 Plus
Act5C-RD 1928 CG4027-RD 162..1289 17..1144 5640 100 Plus
Act5C-RC 2252 CG4027-RC 162..1289 17..1144 5640 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:37:56
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5902698..5903825 17..1144 5640 100 Plus
3R 32079331 3R 13426604..13427731 17..1144 4065 90.7 Plus
2R 25286936 2R 20944843..20945931 56..1144 3990 91.1 Plus
2R 25286936 2R 6014273..6015400 1144..17 3300 86.2 Minus
3R 32079331 3R 15440616..15441541 17..942 2965 88 Plus
3L 28110227 3L 21985349..21986270 15..936 2885 87.5 Plus
3L 28110227 3L 21986640..21986840 944..1144 750 91.5 Plus
3R 32079331 3R 15441607..15441803 947..1143 700 90.4 Plus
2R 25286936 2R 16774750..16774956 335..541 210 73.4 Plus
2R 25286936 2R 16774460..16774558 42..140 195 79.8 Plus
Blast to na_te.dros performed on 2014-11-27 14:37:58 has no hits.

BO11734.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:49:51 Download gff for BO11734.complete
Subject Subject Range Query Range Percent Splice Strand
Act5C-RC 1..1131 17..1148 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:04:55 Download gff for BO11734.complete
Subject Subject Range Query Range Percent Splice Strand
Act5C-RC 159..1290 17..1149 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:48:10 Download gff for BO11734.complete
Subject Subject Range Query Range Percent Splice Strand
Act5C-RA 162..1289 17..1146 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:49:51 Download gff for BO11734.complete
Subject Subject Range Query Range Percent Splice Strand
Act5C-RC 159..1290 17..1149 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:15:40 Download gff for BO11734.complete
Subject Subject Range Query Range Percent Splice Strand
Act5C-RC 162..1289 17..1146 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:15:40 Download gff for BO11734.complete
Subject Subject Range Query Range Percent Splice Strand
X 5902698..5903825 17..1146 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:48:10 Download gff for BO11734.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5796731..5797858 17..1146 99   Plus

BO11734.pep Sequence

Translation from 16 to 1162

> BO11734.pep
MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQ
KDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE
EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTT
GIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYS
FTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVIT
IGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVL
SGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASL
STFQQMWISKQEYDESGPSIVHRKCFASFLDH

BO11734.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:48:38
Subject Length Description Subject Range Query Range Score Percent Strand
Act5C-PE 376 CG4027-PE 1..376 1..376 1966 100 Plus
Act5C-PD 376 CG4027-PD 1..376 1..376 1966 100 Plus
Act5C-PC 376 CG4027-PC 1..376 1..376 1966 100 Plus
Act5C-PA 376 CG4027-PA 1..376 1..376 1966 100 Plus
Act5C-PB 376 CG4027-PB 1..376 1..376 1966 100 Plus