Clone Sequence Records
BO11735.3prime Sequence
904 bp (786 high quality bases) assembled on 2006-04-19
> BO11735.3prime
ATGGTCTAGAAAGCTTGCCATTTTCGAAACTGGTTTAAGGCCTAGTATAT
AAAAGCATTGGCGCAACACAGCCGCAGTTGCCTCGCACAATAGAATTCGG
CTATGATTGACCCCAATAATATCGCCTTGTTTGTTCTTTTCGATGCAATA
ACAAGAGTCATAGAATTCGGTGAACACTGTGCACACCTCGAAGCAAAACT
CGCACAGGAAGTGCAGGAAAAGTTCCTTTGAGCACTTGATGAGTATGTCG
TGGAGTTTCAGTAGAGTCTTAGCCAGCTTCCATTCCTTTTCGTGGTCCAA
CACAATGTTGGTCTTCTTCAGTATTTCGGGTAAATTGGTGAAATCTTCGC
CAGAGTTTCGTGCAATGGAGCAAATACGTGTGTAGGTGTAAAGTAAGTAC
ACCGCAGTGTTGCCGCGATCCTCAAGCATCTTATCGAACGAAAATATATA
GTCGCTGATCCGGTTGTGACATAAATCCGAATACTTAATGCATCCATATG
CCAGCGACTCTTGGGCGTCCTTCAGTTCCTGTGGCGTGAGGACCTTATCG
CGGCCACGACTCTCCAATTGCTGCAGGGATCGCTTCATTCCCTCATCCAG
CAAATCGGACAGCTTAACCGTATCACCCGATCGAGTCTTAAACTTCTTGC
CATCCTCGCCCAGAACGACGCCAAACTGTACGTGGTCAACACGATGGCTG
AGTGGATTTAGGATAGCAGATCGTTCGGCAGCTTTGAATATGGTATTAAA
ATGCGTGCTTTGGCCGGAGTCGACCACATAGATGATCCAATCGCAAAAGC
TCCTCCTCCAAGCGATGGCGAATGGCTGCCATGTCAGAGGTATCATAGGT
AAAGCCGCCATCCGATTTCACGATTGTCAGAGGTATGCCAGTTTTCGTAT
CGTC
BO11735.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:29:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9020-PA | 1998 | Aats-arg-RA | 1217..1995 | 797..19 | 3895 | 100 | Minus |
| CG9020-PA | 1998 | Aats-arg-RA | 1111..1219 | 904..796 | 545 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:45:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aats-arg-RA | 2135 | CG9020-RA | 1175..2059 | 904..19 | 4405 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:45:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15841845..15842729 | 19..904 | 4380 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:45:41 has no hits.
BO11735.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:15:09 Download gff for
BO11735.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9020-PA | 1111..1998 | 15..904 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:42:11 Download gff for
BO11735.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9020-PA | 1111..1998 | 15..904 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 02:12:15 Download gff for
BO11735.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-arg-RA | 1175..2062 | 15..904 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:58:09 Download gff for
BO11735.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-arg-RA | 1175..2062 | 15..904 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:58:09 Download gff for
BO11735.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15841841..15842729 | 15..904 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 02:12:15 Download gff for
BO11735.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15735874..15736762 | 15..904 | 99 | | Plus |
BO11735.5prime Sequence
848 bp (796 high quality bases) assembled on 2006-04-19
> BO11735.5prime
GAAGTTATCAGTCGACATGTCCGAGCTAAATATGGAGCTGAAAAAACTCA
GGGAGCTGGAACTGAAGACCCAAGGCCTTGCCGCCAGAATACAAACTGCC
AAAAGCGGTGAACAGTTGGACGTCGATCTTGTTCAGCTTCAAATTGAAAA
TAAGAAGCTGAAGAACCGCCTGTTTATCCTAAAGAAGTCCATTGCTGAGG
AATCAACTGCCGCCGGCGGCGACGTTTCGAAGCCCAAGGAATCCTCTTCG
ATCACCGAACACCTGGAAAGCGTCTTTCGCCAGGCGATTGCATCAGCTTT
CCCGGAATTCAGAGATACGCCTGTTATAATTGCACCAGTTAATAGTACGT
CTGCGAAATTCGGCGACTATCAGTGCAACAATGCCATGGGATTGTCCAAG
AAGCTGAAAGAGAAGGGCATTAATAAAGCACCACGTGATATTGCAACCGA
GTTGAAAGGACACTGCCCAGCATCACCAATCATTGAAAAGCTGGAAATTG
CCGGAGCTGGCTTCGTAAACGTGTTCCTTAGCAAAGATTATGCATCTTTA
GCCTTAAGCAATCTATTGCGTAACGGTGTCAAGCCGCCAGAAGTGATCAA
AAAGCGAGTCCTGGTCGACTTTTCATCGCCCAACATTGCCAAACAGATGC
ATGTCGGTCACTTGCGGTCCACGATCATTGGCGAGTCGTTATGCCGCTTG
CTGGAGTTCCTGCAGCACGATGTGATCCGCATCAACCACCTGGGTGACTG
GGGAACACAGTTTGGCATGCTGATTGCCCATTTGGAAGATCGTTTCCCCA
ACTACCTAAATGAAAGCCCTCCGATCAGTGATCTGCAATTGTTCTACA
BO11735.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:29:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9020-PA | 1998 | Aats-arg-RA | 1..832 | 17..848 | 4160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 05:28:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aats-arg-RA | 2135 | CG9020-RA | 63..896 | 15..848 | 4170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 05:28:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15843443..15843791 | 534..186 | 1745 | 100 | Minus |
| X | 23542271 | X | 15843071..15843388 | 848..531 | 1575 | 99.7 | Minus |
| X | 23542271 | X | 15843853..15843982 | 187..58 | 650 | 100 | Minus |
| X | 23542271 | X | 15844039..15844083 | 59..15 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 05:28:56 has no hits.
BO11735.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:15:10 Download gff for
BO11735.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9020-PA | 1..831 | 17..847 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:42:13 Download gff for
BO11735.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9020-PA | 1..831 | 17..847 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 07:13:46 Download gff for
BO11735.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-arg-RA | 63..895 | 15..847 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:45:49 Download gff for
BO11735.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-arg-RA | 63..895 | 15..847 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:45:49 Download gff for
BO11735.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15843072..15843384 | 535..847 | 100 | <- | Minus |
| X | 15843443..15843789 | 188..534 | 100 | <- | Minus |
| X | 15843853..15843981 | 59..187 | 100 | <- | Minus |
| X | 15844040..15844083 | 15..58 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 07:13:46 Download gff for
BO11735.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15737886..15738014 | 59..187 | 100 | <- | Minus |
| arm_X | 15738073..15738116 | 15..58 | 100 | | Minus |
| arm_X | 15737476..15737822 | 188..534 | 100 | <- | Minus |
| arm_X | 15737105..15737417 | 535..847 | 100 | <- | Minus |
BO11735.complete Sequence
2029 bp assembled on 2008-01-17
GenBank Submission: FJ632173
> BO11735.complete
GAAGTTATCAGTCGACATGTCCGAGCTAAATATGGAGCTGAAAAAACTCA
GGGAGCTGGAACTGAAGACCCAAGGCCTTGCCGCCAGAATACAAACTGCC
AAAAGCGGTGAACAGTTGGACGTCGATCTTGTTCAGCTTCAAATTGAAAA
TAAGAAGCTGAAGAACCGCCTGTTTATCCTAAAGAAGTCCATTGCTGAGG
AATCAACTGCCGCCGGCGGCGACGTTTCGAAGCCCAAGGAATCCTCTTCG
ATCACCGAACACCTGGAAAGCGTCTTTCGCCAGGCGATTGCATCAGCTTT
CCCGGAATTCAGAGATACGCCTGTTATAATTGCACCAGTTAATAGTACGT
CTGCGAAATTCGGCGACTATCAGTGCAACAATGCCATGGGATTGTCCAAG
AAGCTGAAAGAGAAGGGCATTAATAAAGCACCACGTGATATTGCAACCGA
GTTGAAAGGACACTGCCCAGCATCACCAATCATTGAAAAGCTGGAAATTG
CCGGAGCTGGCTTCGTAAACGTGTTCCTTAGCAAAGATTATGCATCTTTA
GCCTTAAGCAATCTATTGCGTAACGGTGTCAAGCCGCCAGAAGTGATCAA
AAAGCGAGTCCTGGTCGACTTTTCATCGCCCAACATTGCCAAACAGATGC
ATGTCGGTCACTTGCGGTCCACGATCATTGGCGAGTCGTTATGCCGCTTG
CTGGAGTTCCTGCAGCACGATGTGATCCGCATCAACCACCTGGGTGACTG
GGGAACACAGTTTGGCATGCTGATTGCCCATTTGGAAGATCGTTTCCCCA
ACTACCTAAATGAAAGCCCTCCGATCAGTGATCTGCAATTGTTCTACAAG
GAATCCAAGAAGCGATTCGATGAAGATGAGGAGTTCAAAAAACGTGCCTA
CAGTCGAGTGGTTTCATTGCAGAAAGGTGTGCCGAACTCCATTAAGGCGT
GGGAGCTAATTTGCAATGTGTCGCGAAAGGAGTTCCAAACGATCTACGAA
CGATTAGATATTAGCGTCAAGGAACGGGGGGAATCGTTCTACCAATCACG
TATGCTGTCCGTTGTGGAATACTTGCGAGGCAAGGGTCTGCTGGAAGTGG
ATGAAGGACGCGAGATCATGTGGCCAGACGATACGAAAACTGGCATACCT
CTGACAATCGTGAAATCGGATGGCGGCTTTACCTATGATACCTCTGACAT
GGCAGCCATTCGCCATCGCTTGGAGGAGGAGCTTTGCGATTGGATCATCT
ATGTGGTCGACTCCGGCCAAAGCACGCATTTTAATACCATATTCAAAGCT
GCCGAACGATCTGCTATCCTAAATCCACTCAGCCATCGTGTTGACCACGT
ACAGTTTGGCGTCGTTCTGGGCGAGGATGGCAAGAAGTTTAAGACTCGAT
CGGGTGATACGGTTAAGCTGTCCGATTTGCTGGATGAGGGAATGAAGCGA
TCCCTGCAGCAATTGGAGAGTCGTGGCCGCGATAAGGTCCTCACGCCACA
GGAACTGAAGGACGCCCAAGAGTCGCTGGCATATGGATGCATTAAGTATT
CGGATTTATGTCACAACCGGATCAGCGACTATATATTTTCGTTCGATAAG
ATGCTTGAGGATCGCGGCAACACTGCGGTGTACTTACTTTACACCTACAC
ACGTATTTGCTCCATTGCACGAAACTCTGGCGAAGATTTCACCAATTTAC
CCGAAATACTGAAGAAGACCAACATTGTGTTGGACCACGAAAAGGAATGG
AAGCTGGCTAAGACTCTACTGAAACTCCACGACATACTCATCAAGTGCTC
AAAGGAACTTTTCCTGCACTTCCTGTGCGAGTTTTGCTTCGAGGTGTGCA
CAGTGTTCACCGAATTCTATGACTCTTGTTATTGCATCGAAAAGAACAAA
CAAGGCGATATTATTGGGGTCAATCATAGCCGAATTCTATTGTGCGAGGC
AACTGCGGCTGTGTTGCGCCAATGCTTTTATATACTAGGCCTTAAACCAG
TTTCGAAAATGGCAAGCTTTCTAGACCAT
BO11735.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:19:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aats-arg-RA | 1998 | CG9020-PA | 1..1995 | 17..2011 | 9975 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:19:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aats-arg-RA | 2135 | CG9020-RA | 63..2059 | 15..2011 | 9985 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:19:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15841845..15842992 | 2011..864 | 5740 | 100 | Minus |
| X | 23542271 | X | 15843443..15843791 | 534..186 | 1745 | 100 | Minus |
| X | 23542271 | X | 15843055..15843388 | 864..531 | 1655 | 99.7 | Minus |
| X | 23542271 | X | 15843853..15843982 | 187..58 | 650 | 100 | Minus |
| X | 23542271 | X | 15844039..15844083 | 59..15 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:19:13 has no hits.
BO11735.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:58:58 Download gff for
BO11735.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-arg-RA | 1..1998 | 17..2015 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:35:48 Download gff for
BO11735.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-arg-RA | 56..2050 | 17..2013 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:39:48 Download gff for
BO11735.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-arg-RA | 65..2059 | 17..2013 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:58:58 Download gff for
BO11735.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-arg-RA | 54..2053 | 15..2015 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:08:35 Download gff for
BO11735.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-arg-RA | 65..2059 | 17..2013 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:08:35 Download gff for
BO11735.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15841843..15842991 | 865..2013 | 99 | <- | Minus |
| X | 15843055..15843384 | 535..864 | 100 | <- | Minus |
| X | 15843443..15843789 | 188..534 | 100 | <- | Minus |
| X | 15843853..15843981 | 59..187 | 100 | <- | Minus |
| X | 15844040..15844081 | 17..58 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:39:48 Download gff for
BO11735.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15735876..15737024 | 865..2013 | 99 | <- | Minus |
| arm_X | 15737088..15737417 | 535..864 | 100 | <- | Minus |
| arm_X | 15737476..15737822 | 188..534 | 100 | <- | Minus |
| arm_X | 15737886..15738014 | 59..187 | 100 | <- | Minus |
| arm_X | 15738073..15738114 | 17..58 | 100 | | Minus |
BO11735.pep Sequence
Translation from 16 to 2029
> BO11735.pep
MSELNMELKKLRELELKTQGLAARIQTAKSGEQLDVDLVQLQIENKKLKN
RLFILKKSIAEESTAAGGDVSKPKESSSITEHLESVFRQAIASAFPEFRD
TPVIIAPVNSTSAKFGDYQCNNAMGLSKKLKEKGINKAPRDIATELKGHC
PASPIIEKLEIAGAGFVNVFLSKDYASLALSNLLRNGVKPPEVIKKRVLV
DFSSPNIAKQMHVGHLRSTIIGESLCRLLEFLQHDVIRINHLGDWGTQFG
MLIAHLEDRFPNYLNESPPISDLQLFYKESKKRFDEDEEFKKRAYSRVVS
LQKGVPNSIKAWELICNVSRKEFQTIYERLDISVKERGESFYQSRMLSVV
EYLRGKGLLEVDEGREIMWPDDTKTGIPLTIVKSDGGFTYDTSDMAAIRH
RLEEELCDWIIYVVDSGQSTHFNTIFKAAERSAILNPLSHRVDHVQFGVV
LGEDGKKFKTRSGDTVKLSDLLDEGMKRSLQQLESRGRDKVLTPQELKDA
QESLAYGCIKYSDLCHNRISDYIFSFDKMLEDRGNTAVYLLYTYTRICSI
ARNSGEDFTNLPEILKKTNIVLDHEKEWKLAKTLLKLHDILIKCSKELFL
HFLCEFCFEVCTVFTEFYDSCYCIEKNKQGDIIGVNHSRILLCEATAAVL
RQCFYILGLKPVSKMASFLDH
BO11735.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:20:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aats-arg-PA | 665 | CG9020-PA | 1..665 | 1..665 | 3429 | 100 | Plus |
| CG10092-PB | 594 | CG10092-PB | 129..594 | 190..665 | 462 | 29.2 | Plus |
| CG10092-PA | 594 | CG10092-PA | 129..594 | 190..665 | 462 | 29.2 | Plus |
