Clone BO11738 Report

Search the DGRC for BO11738

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:117
Well:38
Vector:pDNR-Dual
Associated Gene/Transcriptphm-RA
Protein status:BO11738.pep:
Sequenced Size:1756

Clone Sequence Records

BO11738.3prime Sequence

873 bp (807 high quality bases) assembled on 2006-04-20

> BO11738.3prime
ATGGTCTAGAAAGCTTGCATCCTGCACCACAGCTCCGTCGGGTGCATGGC
GCATCTCCACCGCCGGCAGCTTGGTGAATCGCAGCATGTGCGGAGTGGGG
GTCAGGGTGATGCCGCTCTCACCCGCCATGTCCACCTCAGTGCCCGAGGG
CAGTTCCAAGTGGAAGCGCCTGAGGATGCGACCCGTAAAGAGCGTGAGTA
TCATGCGAGCCATCTCTTCGCCGGGACACATTCGATAGCCGGACGAGAAT
GGGATGAACTGTGGCGGCGCCTGGTAGGCTCCATCGGCGGTCAAGAAGCG
CTCCGGACGGAACTCCTCCGGTTCCGGGAAGGCCACTGGGTCCATGTGGA
TAGCCCACTCCGAGCAAACGATCATCGAACCACCCTTGATAAAATAATCG
CCCACGACGAAGTTCTCTTTGCATCCGTGCGGAATGCCCAGTGGGACAAC
GCTGCGTATGCGCATCGTCTCGGAAATGCAAGCCCTTAGGTAGGCCAGCG
GCTCCAGTTCCTCCAAAGTGGGAGACGGACCCAGCGGCAGGAGGAGCTCA
TGCAGGCGCCGCTGGCAGCGTTGTTCGCGGGCCAAGTAGAGCAGGAACCA
GCGCAGGGTGGCCAGCGAGGTGTCCACCCCGGCTCCAAAGAGATCGGCCA
GCAGATGGCGCAGCTGGTCGTCGCAGTAGAGCTGCGAATCCGTGTCTCGA
ACGGCTAGGAAGTGCTCCAGGATGCACTCCGGCTCGTACGTGTCCTCCTC
ATCGCTCTCCTCGTCATCCTCGTCTGCCTCACTCTGCTCCTGGCTTGGAT
CCGCTTCCTTTGACTGCCTGAGCTGCTCCTTCTCTAGCTGGCTTTGCAGC
CGCTTCTGCTCCTGGAGCTCCTT

BO11738.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:29:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG6578-PA 1725 phm-RA 868..1722 873..19 4250 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:34:16
Subject Length Description Subject Range Query Range Score Percent Strand
phm-RB 2203 CG6578-RB 1064..1918 873..19 4260 99.9 Minus
phm-RA 1997 CG6578-RA 1064..1918 873..19 4260 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:34:11
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18687294..18688148 873..19 4260 99.9 Minus
Blast to na_te.dros performed on 2015-02-11 10:34:13 has no hits.

BO11738.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:15:14 Download gff for BO11738.3prime
Subject Subject Range Query Range Percent Splice Strand
phm-PA 868..1725 18..873 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:42:20 Download gff for BO11738.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6578-PA 868..1725 18..873 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 05:06:05 Download gff for BO11738.3prime
Subject Subject Range Query Range Percent Splice Strand
phm-RA 1064..1924 11..873 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:35:02 Download gff for BO11738.3prime
Subject Subject Range Query Range Percent Splice Strand
phm-RA 1064..1924 11..873 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:35:02 Download gff for BO11738.3prime
Subject Subject Range Query Range Percent Splice Strand
X 18687294..18688154 11..873 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 05:06:05 Download gff for BO11738.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18581327..18582187 11..873 99   Minus

BO11738.5prime Sequence

745 bp (744 high quality bases) assembled on 2006-04-19

> BO11738.5prime
GAAGTTATCAGTCGACATGTCGGCGGACATCGTCGATATTGGCCACACCG
GTTGGATGCCCTCGGTGCAGAGCCTGAGTATTCTGCTGGTTCCGGGTGCG
CTCGTCCTGGTGATTCTCTACCTGTGCGAGCGCCAGTGCAATGACCTCAT
GGGTGCCCCACCGCCGGGTCCCTGGGGCCTGCCCTTTCTGGGTTACCTGC
CCTTCCTGGACGCCCGTGCGCCGCACAAGTCACTCCAGAAGCTGGCCAAG
CGGTATGGTGGAATTTTCGAGCTGAAAATGGGCAGGGTGCCGACCGTAGT
CCTCTCGGATGCCGCCTTGGTGCGGGATTTCTTTCGGCGCGATGTGATGA
CTGGCCGTGCGCCGCTCTACCTCACCCACGGCATCATGGGTGGATTTGGC
ATCATCTGCGCCCAGGAGGACATTTGGCGACATGCACGGCGCGAGACTAT
CGATTGGCTAAAGGCCTTGGGCATGACCCGTCGGCCGGGGGAACTGCGCG
CGCGGCTGGAGCGGCGCATAGCCCGCGGAGTCGACGAGTGCGTACGGCTT
TTCGATACTGAGGCAAAGAAGAGCTGTGCGTCGGAAGTGAATCCGCTGCC
GGCGCTCCATCACTCGCTGGGCAACATAATCAACGACCTGGTCTTCGGGA
TCACCTACAAGCGCGACGACCCCGACTGGCTGTACCTGCAGCGGCTGCAG
GAGGAGGGCGTCAAGCTGATTGGCGTCTCCGGGGTGGTCAACTTT

BO11738.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:29:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG6578-PA 1725 phm-RA 1..729 17..745 3645 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:36:49
Subject Length Description Subject Range Query Range Score Percent Strand
phm-RB 2203 CG6578-RB 197..925 17..745 3645 100 Plus
phm-RA 1997 CG6578-RA 197..925 17..745 3645 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:36:44
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18685962..18686344 17..399 1915 100 Plus
X 23542271 X 18686957..18687155 547..745 995 100 Plus
X 23542271 X 18686429..18686578 398..547 750 100 Plus
Blast to na_te.dros performed on 2015-02-11 10:36:46 has no hits.

BO11738.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:15:15 Download gff for BO11738.5prime
Subject Subject Range Query Range Percent Splice Strand
phm-PA 1..729 17..745 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:42:21 Download gff for BO11738.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6578-PA 1..729 17..745 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 03:07:37 Download gff for BO11738.5prime
Subject Subject Range Query Range Percent Splice Strand
phm-RA 193..925 10..745 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:16:49 Download gff for BO11738.5prime
Subject Subject Range Query Range Percent Splice Strand
phm-RA 193..925 10..745 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:16:49 Download gff for BO11738.5prime
Subject Subject Range Query Range Percent Splice Strand
X 18685958..18686343 10..398 99 -> Plus
X 18686430..18686578 399..547 100 -> Plus
X 18686958..18687155 548..745 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 03:07:37 Download gff for BO11738.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18579991..18580376 10..398 99 -> Plus
arm_X 18580463..18580611 399..547 100 -> Plus
arm_X 18580991..18581188 548..745 100   Plus

BO11738.complete Sequence

1756 bp assembled on 2008-01-17

GenBank Submission: FJ632174

> BO11738.complete
GAAGTTATCAGTCGACATGTCGGCGGACATCGTCGATATTGGCCACACCG
GTTGGATGCCCTCGGTGCAGAGCCTGAGTATTCTGCTGGTTCCGGGTGCG
CTCGTCCTGGTGATTCTCTACCTGTGCGAGCGCCAGTGCAATGACCTCAT
GGGTGCCCCACCGCCGGGTCCCTGGGGCCTGCCCTTTCTGGGTTACCTGC
CCTTCCTGGACGCCCGTGCGCCGCACAAGTCACTCCAGAAGCTGGCCAAG
CGGTATGGTGGAATTTTCGAGCTGAAAATGGGCAGGGTGCCGACCGTAGT
CCTCTCGGATGCCGCCTTGGTGCGGGATTTCTTTCGGCGCGATGTGATGA
CTGGCCGTGCGCCGCTCTACCTCACCCACGGCATCATGGGTGGATTTGGC
ATCATCTGCGCCCAGGAGGACATTTGGCGACATGCACGGCGCGAGACTAT
CGATTGGCTAAAGGCCTTGGGCATGACCCGTCGGCCGGGGGAACTGCGCG
CGCGGCTGGAGCGGCGCATAGCCCGCGGAGTCGACGAGTGCGTACGGCTT
TTCGATACTGAGGCAAAGAAGAGCTGTGCGTCGGAAGTGAATCCGCTGCC
GGCGCTCCATCACTCGCTGGGCAACATAATCAACGACCTGGTCTTCGGGA
TCACCTACAAGCGCGACGACCCCGACTGGCTGTACCTGCAGCGGCTGCAG
GAGGAGGGCGTCAAGCTGATTGGCGTCTCCGGGGTGGTCAACTTTTTGCC
CTGGCTGCGTCACCTGCCCGCCAACGTGCGCAACATCCGCTTCCTGCTGG
AGGGCAAGGCCAAGACGCACGCCATCTACGACCGCATTGTGGAGGCCTGT
GGCCAGCGGCTGAAGGAGAAGCAGAAGGTGTTCAAGGAGCTCCAGGAGCA
GAAGCGGCTGCAAAGGCAGCTAGAGAAGGAGCAGCTCAGGCAGTCAAAGG
AAGCGGATCCAAGCCAGGAGCAGAGTGAGGCAGACGAGGATGACGAGGAG
AGCGATGAGGAGGACACGTACGAGCCGGAGTGCATCCTGGAGCACTTCCT
AGCCGTTCGAGACACGGATTCGCAGCTCTACTGCGACGACCAGCTGCGCC
ATCTGCTGGCCGATCTCTTTGGAGCCGGGGTGGACACCTCGCTGGCCACC
CTGCGCTGGTTCCTGCTCTACTTGGCCCGCGAACAACGCTGCCAGCGGCG
CCTGCATGAGCTCCTCCTGCCGCTGGGTCCGTCTCCCACTTTGGAGGAAC
TGGAGCCGCTGGCCTACCTAAGGGCTTGCATTTCCGAGACGATGCGCATA
CGCAGCGTTGTCCCACTGGGCATTCCGCACGGATGCAAAGAGAACTTCGT
CGTGGGCGATTATTTTATCAAGGGTGGTTCGATGATCGTTTGCTCGGAGT
GGGCTATCCACATGGACCCAGTGGCCTTCCCGGAACCGGAGGAGTTCCGT
CCGGAGCGCTTCTTGACCGCCGATGGAGCCTACCAGGCGCCGCCACAGTT
CATCCCATTCTCGTCCGGCTATCGAATGTGTCCCGGCGAAGAGATGGCTC
GCATGATACTCACGCTCTTTACGGGTCGCATCCTCAGGCGCTTCCACTTG
GAACTGCCCTCGGGCACTGAGGTGGACATGGCGGGTGAGAGCGGCATCAC
CCTGACCCCCACTCCGCACATGCTGCGATTCACCAAGCTGCCGGCGGTGG
AGATGCGCCATGCACCCGACGGAGCTGTGGTGCAGGATGCAAGCTTTCTA
GACCAT

BO11738.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:53:44
Subject Length Description Subject Range Query Range Score Percent Strand
phm-RB 1725 CG6578-PB 1..1722 17..1738 8610 100 Plus
phm-RA 1725 CG6578-PA 1..1722 17..1738 8610 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:53:45
Subject Length Description Subject Range Query Range Score Percent Strand
phm-RB 2203 CG6578-RB 197..1918 17..1738 8610 100 Plus
phm-RA 1997 CG6578-RA 197..1918 17..1738 8610 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:53:41
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18686957..18688148 547..1738 5960 100 Plus
X 23542271 X 18685962..18686344 17..399 1915 100 Plus
X 23542271 X 18686429..18686578 398..547 750 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:53:42 has no hits.

BO11738.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:58:59 Download gff for BO11738.complete
Subject Subject Range Query Range Percent Splice Strand
phm-RA 1..1725 17..1739 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:35:47 Download gff for BO11738.complete
Subject Subject Range Query Range Percent Splice Strand
phm-RA 194..1915 17..1740 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:27:19 Download gff for BO11738.complete
Subject Subject Range Query Range Percent Splice Strand
phm-RA 197..1918 17..1740 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:58:59 Download gff for BO11738.complete
Subject Subject Range Query Range Percent Splice Strand
phm-RA 190..1921 10..1746 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:06:50 Download gff for BO11738.complete
Subject Subject Range Query Range Percent Splice Strand
phm-RA 197..1918 17..1740 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:06:50 Download gff for BO11738.complete
Subject Subject Range Query Range Percent Splice Strand
X 18685962..18686343 17..398 100 -> Plus
X 18686430..18686578 399..547 100 -> Plus
X 18686958..18688148 548..1740 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:27:19 Download gff for BO11738.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 18579995..18580376 17..398 100 -> Plus
arm_X 18580463..18580611 399..547 100 -> Plus
arm_X 18580991..18582181 548..1740 99   Plus

BO11738.pep Sequence

Translation from 16 to 1756

> BO11738.pep
MSADIVDIGHTGWMPSVQSLSILLVPGALVLVILYLCERQCNDLMGAPPP
GPWGLPFLGYLPFLDARAPHKSLQKLAKRYGGIFELKMGRVPTVVLSDAA
LVRDFFRRDVMTGRAPLYLTHGIMGGFGIICAQEDIWRHARRETIDWLKA
LGMTRRPGELRARLERRIARGVDECVRLFDTEAKKSCASEVNPLPALHHS
LGNIINDLVFGITYKRDDPDWLYLQRLQEEGVKLIGVSGVVNFLPWLRHL
PANVRNIRFLLEGKAKTHAIYDRIVEACGQRLKEKQKVFKELQEQKRLQR
QLEKEQLRQSKEADPSQEQSEADEDDEESDEEDTYEPECILEHFLAVRDT
DSQLYCDDQLRHLLADLFGAGVDTSLATLRWFLLYLAREQRCQRRLHELL
LPLGPSPTLEELEPLAYLRACISETMRIRSVVPLGIPHGCKENFVVGDYF
IKGGSMIVCSEWAIHMDPVAFPEPEEFRPERFLTADGAYQAPPQFIPFSS
GYRMCPGEEMARMILTLFTGRILRRFHLELPSGTEVDMAGESGITLTPTP
HMLRFTKLPAVEMRHAPDGAVVQDASFLDH

BO11738.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:39:10
Subject Length Description Subject Range Query Range Score Percent Strand
phm-PB 574 CG6578-PB 1..574 1..574 3029 100 Plus
phm-PA 574 CG6578-PA 1..574 1..574 3029 100 Plus
Cyp18a1-PB 538 CG6816-PB 54..510 49..548 557 30.6 Plus
Cyp18a1-PA 538 CG6816-PA 54..510 49..548 557 30.6 Plus
Cyp305a1-PA 504 CG8733-PA 30..502 49..557 302 24.6 Plus