Clone Sequence Records
BO11738.3prime Sequence
873 bp (807 high quality bases) assembled on 2006-04-20
> BO11738.3prime
ATGGTCTAGAAAGCTTGCATCCTGCACCACAGCTCCGTCGGGTGCATGGC
GCATCTCCACCGCCGGCAGCTTGGTGAATCGCAGCATGTGCGGAGTGGGG
GTCAGGGTGATGCCGCTCTCACCCGCCATGTCCACCTCAGTGCCCGAGGG
CAGTTCCAAGTGGAAGCGCCTGAGGATGCGACCCGTAAAGAGCGTGAGTA
TCATGCGAGCCATCTCTTCGCCGGGACACATTCGATAGCCGGACGAGAAT
GGGATGAACTGTGGCGGCGCCTGGTAGGCTCCATCGGCGGTCAAGAAGCG
CTCCGGACGGAACTCCTCCGGTTCCGGGAAGGCCACTGGGTCCATGTGGA
TAGCCCACTCCGAGCAAACGATCATCGAACCACCCTTGATAAAATAATCG
CCCACGACGAAGTTCTCTTTGCATCCGTGCGGAATGCCCAGTGGGACAAC
GCTGCGTATGCGCATCGTCTCGGAAATGCAAGCCCTTAGGTAGGCCAGCG
GCTCCAGTTCCTCCAAAGTGGGAGACGGACCCAGCGGCAGGAGGAGCTCA
TGCAGGCGCCGCTGGCAGCGTTGTTCGCGGGCCAAGTAGAGCAGGAACCA
GCGCAGGGTGGCCAGCGAGGTGTCCACCCCGGCTCCAAAGAGATCGGCCA
GCAGATGGCGCAGCTGGTCGTCGCAGTAGAGCTGCGAATCCGTGTCTCGA
ACGGCTAGGAAGTGCTCCAGGATGCACTCCGGCTCGTACGTGTCCTCCTC
ATCGCTCTCCTCGTCATCCTCGTCTGCCTCACTCTGCTCCTGGCTTGGAT
CCGCTTCCTTTGACTGCCTGAGCTGCTCCTTCTCTAGCTGGCTTTGCAGC
CGCTTCTGCTCCTGGAGCTCCTT
BO11738.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:29:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6578-PA | 1725 | phm-RA | 868..1722 | 873..19 | 4250 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:34:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
phm-RB | 2203 | CG6578-RB | 1064..1918 | 873..19 | 4260 | 99.9 | Minus |
phm-RA | 1997 | CG6578-RA | 1064..1918 | 873..19 | 4260 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:34:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18687294..18688148 | 873..19 | 4260 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:34:13 has no hits.
BO11738.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:15:14 Download gff for
BO11738.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
phm-PA | 868..1725 | 18..873 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:42:20 Download gff for
BO11738.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6578-PA | 868..1725 | 18..873 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 05:06:05 Download gff for
BO11738.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
phm-RA | 1064..1924 | 11..873 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:35:02 Download gff for
BO11738.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
phm-RA | 1064..1924 | 11..873 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:35:02 Download gff for
BO11738.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18687294..18688154 | 11..873 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 05:06:05 Download gff for
BO11738.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18581327..18582187 | 11..873 | 99 | | Minus |
BO11738.5prime Sequence
745 bp (744 high quality bases) assembled on 2006-04-19
> BO11738.5prime
GAAGTTATCAGTCGACATGTCGGCGGACATCGTCGATATTGGCCACACCG
GTTGGATGCCCTCGGTGCAGAGCCTGAGTATTCTGCTGGTTCCGGGTGCG
CTCGTCCTGGTGATTCTCTACCTGTGCGAGCGCCAGTGCAATGACCTCAT
GGGTGCCCCACCGCCGGGTCCCTGGGGCCTGCCCTTTCTGGGTTACCTGC
CCTTCCTGGACGCCCGTGCGCCGCACAAGTCACTCCAGAAGCTGGCCAAG
CGGTATGGTGGAATTTTCGAGCTGAAAATGGGCAGGGTGCCGACCGTAGT
CCTCTCGGATGCCGCCTTGGTGCGGGATTTCTTTCGGCGCGATGTGATGA
CTGGCCGTGCGCCGCTCTACCTCACCCACGGCATCATGGGTGGATTTGGC
ATCATCTGCGCCCAGGAGGACATTTGGCGACATGCACGGCGCGAGACTAT
CGATTGGCTAAAGGCCTTGGGCATGACCCGTCGGCCGGGGGAACTGCGCG
CGCGGCTGGAGCGGCGCATAGCCCGCGGAGTCGACGAGTGCGTACGGCTT
TTCGATACTGAGGCAAAGAAGAGCTGTGCGTCGGAAGTGAATCCGCTGCC
GGCGCTCCATCACTCGCTGGGCAACATAATCAACGACCTGGTCTTCGGGA
TCACCTACAAGCGCGACGACCCCGACTGGCTGTACCTGCAGCGGCTGCAG
GAGGAGGGCGTCAAGCTGATTGGCGTCTCCGGGGTGGTCAACTTT
BO11738.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:29:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6578-PA | 1725 | phm-RA | 1..729 | 17..745 | 3645 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:36:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
phm-RB | 2203 | CG6578-RB | 197..925 | 17..745 | 3645 | 100 | Plus |
phm-RA | 1997 | CG6578-RA | 197..925 | 17..745 | 3645 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:36:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18685962..18686344 | 17..399 | 1915 | 100 | Plus |
X | 23542271 | X | 18686957..18687155 | 547..745 | 995 | 100 | Plus |
X | 23542271 | X | 18686429..18686578 | 398..547 | 750 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:36:46 has no hits.
BO11738.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:15:15 Download gff for
BO11738.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
phm-PA | 1..729 | 17..745 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:42:21 Download gff for
BO11738.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6578-PA | 1..729 | 17..745 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 03:07:37 Download gff for
BO11738.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
phm-RA | 193..925 | 10..745 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:16:49 Download gff for
BO11738.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
phm-RA | 193..925 | 10..745 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:16:49 Download gff for
BO11738.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18685958..18686343 | 10..398 | 99 | -> | Plus |
X | 18686430..18686578 | 399..547 | 100 | -> | Plus |
X | 18686958..18687155 | 548..745 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 03:07:37 Download gff for
BO11738.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18579991..18580376 | 10..398 | 99 | -> | Plus |
arm_X | 18580463..18580611 | 399..547 | 100 | -> | Plus |
arm_X | 18580991..18581188 | 548..745 | 100 | | Plus |
BO11738.complete Sequence
1756 bp assembled on 2008-01-17
GenBank Submission: FJ632174
> BO11738.complete
GAAGTTATCAGTCGACATGTCGGCGGACATCGTCGATATTGGCCACACCG
GTTGGATGCCCTCGGTGCAGAGCCTGAGTATTCTGCTGGTTCCGGGTGCG
CTCGTCCTGGTGATTCTCTACCTGTGCGAGCGCCAGTGCAATGACCTCAT
GGGTGCCCCACCGCCGGGTCCCTGGGGCCTGCCCTTTCTGGGTTACCTGC
CCTTCCTGGACGCCCGTGCGCCGCACAAGTCACTCCAGAAGCTGGCCAAG
CGGTATGGTGGAATTTTCGAGCTGAAAATGGGCAGGGTGCCGACCGTAGT
CCTCTCGGATGCCGCCTTGGTGCGGGATTTCTTTCGGCGCGATGTGATGA
CTGGCCGTGCGCCGCTCTACCTCACCCACGGCATCATGGGTGGATTTGGC
ATCATCTGCGCCCAGGAGGACATTTGGCGACATGCACGGCGCGAGACTAT
CGATTGGCTAAAGGCCTTGGGCATGACCCGTCGGCCGGGGGAACTGCGCG
CGCGGCTGGAGCGGCGCATAGCCCGCGGAGTCGACGAGTGCGTACGGCTT
TTCGATACTGAGGCAAAGAAGAGCTGTGCGTCGGAAGTGAATCCGCTGCC
GGCGCTCCATCACTCGCTGGGCAACATAATCAACGACCTGGTCTTCGGGA
TCACCTACAAGCGCGACGACCCCGACTGGCTGTACCTGCAGCGGCTGCAG
GAGGAGGGCGTCAAGCTGATTGGCGTCTCCGGGGTGGTCAACTTTTTGCC
CTGGCTGCGTCACCTGCCCGCCAACGTGCGCAACATCCGCTTCCTGCTGG
AGGGCAAGGCCAAGACGCACGCCATCTACGACCGCATTGTGGAGGCCTGT
GGCCAGCGGCTGAAGGAGAAGCAGAAGGTGTTCAAGGAGCTCCAGGAGCA
GAAGCGGCTGCAAAGGCAGCTAGAGAAGGAGCAGCTCAGGCAGTCAAAGG
AAGCGGATCCAAGCCAGGAGCAGAGTGAGGCAGACGAGGATGACGAGGAG
AGCGATGAGGAGGACACGTACGAGCCGGAGTGCATCCTGGAGCACTTCCT
AGCCGTTCGAGACACGGATTCGCAGCTCTACTGCGACGACCAGCTGCGCC
ATCTGCTGGCCGATCTCTTTGGAGCCGGGGTGGACACCTCGCTGGCCACC
CTGCGCTGGTTCCTGCTCTACTTGGCCCGCGAACAACGCTGCCAGCGGCG
CCTGCATGAGCTCCTCCTGCCGCTGGGTCCGTCTCCCACTTTGGAGGAAC
TGGAGCCGCTGGCCTACCTAAGGGCTTGCATTTCCGAGACGATGCGCATA
CGCAGCGTTGTCCCACTGGGCATTCCGCACGGATGCAAAGAGAACTTCGT
CGTGGGCGATTATTTTATCAAGGGTGGTTCGATGATCGTTTGCTCGGAGT
GGGCTATCCACATGGACCCAGTGGCCTTCCCGGAACCGGAGGAGTTCCGT
CCGGAGCGCTTCTTGACCGCCGATGGAGCCTACCAGGCGCCGCCACAGTT
CATCCCATTCTCGTCCGGCTATCGAATGTGTCCCGGCGAAGAGATGGCTC
GCATGATACTCACGCTCTTTACGGGTCGCATCCTCAGGCGCTTCCACTTG
GAACTGCCCTCGGGCACTGAGGTGGACATGGCGGGTGAGAGCGGCATCAC
CCTGACCCCCACTCCGCACATGCTGCGATTCACCAAGCTGCCGGCGGTGG
AGATGCGCCATGCACCCGACGGAGCTGTGGTGCAGGATGCAAGCTTTCTA
GACCAT
BO11738.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:53:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
phm-RB | 1725 | CG6578-PB | 1..1722 | 17..1738 | 8610 | 100 | Plus |
phm-RA | 1725 | CG6578-PA | 1..1722 | 17..1738 | 8610 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:53:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
phm-RB | 2203 | CG6578-RB | 197..1918 | 17..1738 | 8610 | 100 | Plus |
phm-RA | 1997 | CG6578-RA | 197..1918 | 17..1738 | 8610 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:53:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18686957..18688148 | 547..1738 | 5960 | 100 | Plus |
X | 23542271 | X | 18685962..18686344 | 17..399 | 1915 | 100 | Plus |
X | 23542271 | X | 18686429..18686578 | 398..547 | 750 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:53:42 has no hits.
BO11738.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:58:59 Download gff for
BO11738.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
phm-RA | 1..1725 | 17..1739 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:35:47 Download gff for
BO11738.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
phm-RA | 194..1915 | 17..1740 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:27:19 Download gff for
BO11738.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
phm-RA | 197..1918 | 17..1740 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:58:59 Download gff for
BO11738.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
phm-RA | 190..1921 | 10..1746 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:06:50 Download gff for
BO11738.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
phm-RA | 197..1918 | 17..1740 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:06:50 Download gff for
BO11738.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18685962..18686343 | 17..398 | 100 | -> | Plus |
X | 18686430..18686578 | 399..547 | 100 | -> | Plus |
X | 18686958..18688148 | 548..1740 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:27:19 Download gff for
BO11738.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18579995..18580376 | 17..398 | 100 | -> | Plus |
arm_X | 18580463..18580611 | 399..547 | 100 | -> | Plus |
arm_X | 18580991..18582181 | 548..1740 | 99 | | Plus |
BO11738.pep Sequence
Translation from 16 to 1756
> BO11738.pep
MSADIVDIGHTGWMPSVQSLSILLVPGALVLVILYLCERQCNDLMGAPPP
GPWGLPFLGYLPFLDARAPHKSLQKLAKRYGGIFELKMGRVPTVVLSDAA
LVRDFFRRDVMTGRAPLYLTHGIMGGFGIICAQEDIWRHARRETIDWLKA
LGMTRRPGELRARLERRIARGVDECVRLFDTEAKKSCASEVNPLPALHHS
LGNIINDLVFGITYKRDDPDWLYLQRLQEEGVKLIGVSGVVNFLPWLRHL
PANVRNIRFLLEGKAKTHAIYDRIVEACGQRLKEKQKVFKELQEQKRLQR
QLEKEQLRQSKEADPSQEQSEADEDDEESDEEDTYEPECILEHFLAVRDT
DSQLYCDDQLRHLLADLFGAGVDTSLATLRWFLLYLAREQRCQRRLHELL
LPLGPSPTLEELEPLAYLRACISETMRIRSVVPLGIPHGCKENFVVGDYF
IKGGSMIVCSEWAIHMDPVAFPEPEEFRPERFLTADGAYQAPPQFIPFSS
GYRMCPGEEMARMILTLFTGRILRRFHLELPSGTEVDMAGESGITLTPTP
HMLRFTKLPAVEMRHAPDGAVVQDASFLDH
BO11738.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:39:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
phm-PB | 574 | CG6578-PB | 1..574 | 1..574 | 3029 | 100 | Plus |
phm-PA | 574 | CG6578-PA | 1..574 | 1..574 | 3029 | 100 | Plus |
Cyp18a1-PB | 538 | CG6816-PB | 54..510 | 49..548 | 557 | 30.6 | Plus |
Cyp18a1-PA | 538 | CG6816-PA | 54..510 | 49..548 | 557 | 30.6 | Plus |
Cyp305a1-PA | 504 | CG8733-PA | 30..502 | 49..557 | 302 | 24.6 | Plus |