Clone BO11739 Report

Search the DGRC for BO11739

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:117
Well:39
Vector:pDNR-Dual
Associated Gene/TranscriptCG30195-RA
Protein status:BO11739.pep: validated full length
Sequenced Size:493

Clone Sequence Records

BO11739.3prime Sequence

491 bp (490 high quality bases) assembled on 2006-04-19

> BO11739.3prime
ATGGTCTAGAAAGCTTGCTTGGTGTACTGCTATTTGCGTCTGAGATTTGT
CCATATCCTTGGCTGCCTTCTCTGCTCTCTTCTTCTCCCTGCTGGCCAGA
ACTTTCTCCCTGGATTTCTGGGCCCTTTCAGCGCAATCCTTGGGTCGTGT
CTTCAGGGTCATATCATCCACGGCCGCCTGTTTACGGGCTGATCTCGAAA
TGCATCGTTCCATGCAGCTGATGGGCACAAATCTTCCAATGAAGCAACCG
CAGTGTGAACAATAGTGATTGATGTCCTGGCGGCCAGACCATTTTTTACA
AAGTTTTGTGAATCCCAGAAATCTCTGCAGGCAAGTGACCAACTCCAGTT
GCACCAAACTGGTTCCAGACTTCTCACACGAAGGACAACGGATCCAGGTG
GGCTCCTCCTTCAGGTATCCCACTTGTGGCTTGTGGCTGACAATGATGGC
CACAATCTGCGGTTCGTCCACGGTCATGTCGACTGATAACT

BO11739.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:29:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG30195-PA 462 CG30195-RA 1..459 477..19 2295 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 18:39:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG30195-RA 575 CG30195-RA 36..495 478..19 2300 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 18:38:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22646696..22646976 19..299 1405 100 Plus
2R 25286936 2R 22647031..22647210 299..478 900 100 Plus
Blast to na_te.dros performed on 2015-02-06 18:38:56 has no hits.

BO11739.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:15:16 Download gff for BO11739.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30195-PA 1..462 15..477 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:42:23 Download gff for BO11739.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30195-PA 1..462 15..477 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:41:10 Download gff for BO11739.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30195-RA 30..498 15..482 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:45:40 Download gff for BO11739.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30195-RA 30..498 15..482 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:45:40 Download gff for BO11739.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 22646692..22646975 15..298 99 <- Plus
2R 22647031..22647216 299..482 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:41:10 Download gff for BO11739.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18534197..18534480 15..298 99 <- Plus
arm_2R 18534536..18534721 299..482 98   Plus

BO11739.5prime Sequence

491 bp (490 high quality bases) assembled on 2006-04-19

> BO11739.5prime
GAAGTTATCAGTCGACATGACCGTGGACGAACCGCAGATTGTGGCCATCA
TTGTCAGCCACAAGCCACAAGTGGGATACCTGAAGGAGGAGCCCACCTGG
ATCCGTTGTCCTTCGTGTGAGAAGTCTGGAACCAGTTTGGTGCAACTGGA
GTTGGTCACTTGCCTGCAGAGATTTCTGGGATTCACAAAACTTTGTAAAA
AATGGTCTGGCCGCCAGGACATCAATCACTATTGTTCACACTGCGGTTGC
TTCATTGGAAGATTTGTGCCCATCAGCTGCATGGAACGATGCATTTCGAG
ATCAGCCCGTAAACAGGCGGCCGTGGATGATATGACCCTGAAGACACGAC
CCAAGGATTGCGCTGAAAGGGCCCAGAAATCCAGGGAGAAAGTTCTGGCC
AGCAGGGAGAAGAAGAGAGCAGAGAAGGCAGCCAAGGATATGGACAAATC
TCAGACGCAAATAGCAGTACACCAAGCAAGCTTTCTAGACC

BO11739.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:29:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG30195-PA 462 CG30195-RA 1..459 17..475 2295 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:37:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG30195-RA 575 CG30195-RA 36..495 16..475 2300 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:37:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22646696..22646976 475..195 1405 100 Minus
2R 25286936 2R 22647031..22647210 195..16 900 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:37:12 has no hits.

BO11739.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:15:17 Download gff for BO11739.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30195-PA 1..462 17..479 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:42:24 Download gff for BO11739.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30195-PA 1..462 17..479 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 03:07:42 Download gff for BO11739.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30195-RA 30..498 12..479 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:17:29 Download gff for BO11739.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30195-RA 30..498 12..479 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:17:29 Download gff for BO11739.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22646692..22646975 196..479 99 <- Minus
2R 22647031..22647216 12..195 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 03:07:42 Download gff for BO11739.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18534197..18534480 196..479 99 <- Minus
arm_2R 18534536..18534721 12..195 98   Minus

BO11739.complete Sequence

493 bp assembled on 2006-10-11

GenBank Submission: FJ632175

> BO11739.complete
GAAGTTATCAGTCGACATGACCGTGGACGAACCGCAGATTGTGGCCATCA
TTGTCAGCCACAAGCCACAAGTGGGATACCTGAAGGAGGAGCCCACCTGG
ATCCGTTGTCCTTCGTGTGAGAAGTCTGGAACCAGTTTGGTGCAACTGGA
GTTGGTCACTTGCCTGCAGAGATTTCTGGGATTCACAAAACTTTGTAAAA
AATGGTCTGGCCGCCAGGACATCAATCACTATTGTTCACACTGCGGTTGC
TTCATTGGAAGATTTGTGCCCATCAGCTGCATGGAACGATGCATTTCGAG
ATCAGCCCGTAAACAGGCGGCCGTGGATGATATGACCCTGAAGACACGAC
CCAAGGATTGCGCTGAAAGGGCCCAGAAATCCAGGGAGAAAGTTCTGGCC
AGCAGGGAGAAGAAGAGAGCAGAGAAGGCAGCCAAGGATATGGACAAATC
TCAGACGCAAATAGCAGTACACCAAGCAAGCTTTCTAGACCAT

BO11739.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:18:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG30195-RA 462 CG30195-PA 1..459 17..475 2295 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:18:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG30195-RA 575 CG30195-RA 36..495 16..475 2300 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:18:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22646696..22646976 475..195 1405 100 Minus
2R 25286936 2R 22647031..22647210 195..16 900 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:18:33 has no hits.

BO11739.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:49:52 Download gff for BO11739.complete
Subject Subject Range Query Range Percent Splice Strand
CG30195-RA 1..462 17..479 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:04:56 Download gff for BO11739.complete
Subject Subject Range Query Range Percent Splice Strand
CG30195-RA 26..494 12..479 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:07:01 Download gff for BO11739.complete
Subject Subject Range Query Range Percent Splice Strand
CG30195-RA 37..495 17..477 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:49:52 Download gff for BO11739.complete
Subject Subject Range Query Range Percent Splice Strand
CG30195-RA 26..494 12..479 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:18:26 Download gff for BO11739.complete
Subject Subject Range Query Range Percent Splice Strand
CG30195-RA 37..495 17..477 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:18:26 Download gff for BO11739.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22646694..22646975 196..477 99 <- Minus
2R 22647031..22647209 17..195 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:07:01 Download gff for BO11739.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18534199..18534480 196..477 99 <- Minus
arm_2R 18534536..18534714 17..195 100   Minus

BO11739.pep Sequence

Translation from 16 to 493

> BO11739.pep
MTVDEPQIVAIIVSHKPQVGYLKEEPTWIRCPSCEKSGTSLVQLELVTCL
QRFLGFTKLCKKWSGRQDINHYCSHCGCFIGRFVPISCMERCISRSARKQ
AAVDDMTLKTRPKDCAERAQKSREKVLASREKKRAEKAAKDMDKSQTQIA
VHQASFLDH

BO11739.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:48:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG30195-PA 153 CG30195-PA 1..153 1..153 812 100 Plus
CG30196-PA 147 CG30196-PA 16..145 13..137 203 34.6 Plus