Clone Sequence Records
BO11739.3prime Sequence
491 bp (490 high quality bases) assembled on 2006-04-19
> BO11739.3prime
ATGGTCTAGAAAGCTTGCTTGGTGTACTGCTATTTGCGTCTGAGATTTGT
CCATATCCTTGGCTGCCTTCTCTGCTCTCTTCTTCTCCCTGCTGGCCAGA
ACTTTCTCCCTGGATTTCTGGGCCCTTTCAGCGCAATCCTTGGGTCGTGT
CTTCAGGGTCATATCATCCACGGCCGCCTGTTTACGGGCTGATCTCGAAA
TGCATCGTTCCATGCAGCTGATGGGCACAAATCTTCCAATGAAGCAACCG
CAGTGTGAACAATAGTGATTGATGTCCTGGCGGCCAGACCATTTTTTACA
AAGTTTTGTGAATCCCAGAAATCTCTGCAGGCAAGTGACCAACTCCAGTT
GCACCAAACTGGTTCCAGACTTCTCACACGAAGGACAACGGATCCAGGTG
GGCTCCTCCTTCAGGTATCCCACTTGTGGCTTGTGGCTGACAATGATGGC
CACAATCTGCGGTTCGTCCACGGTCATGTCGACTGATAACT
BO11739.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:29:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30195-PA | 462 | CG30195-RA | 1..459 | 477..19 | 2295 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 18:39:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30195-RA | 575 | CG30195-RA | 36..495 | 478..19 | 2300 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 18:38:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22646696..22646976 | 19..299 | 1405 | 100 | Plus |
2R | 25286936 | 2R | 22647031..22647210 | 299..478 | 900 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 18:38:56 has no hits.
BO11739.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:15:16 Download gff for
BO11739.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30195-PA | 1..462 | 15..477 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:42:23 Download gff for
BO11739.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30195-PA | 1..462 | 15..477 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:41:10 Download gff for
BO11739.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30195-RA | 30..498 | 15..482 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:45:40 Download gff for
BO11739.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30195-RA | 30..498 | 15..482 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:45:40 Download gff for
BO11739.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22646692..22646975 | 15..298 | 99 | <- | Plus |
2R | 22647031..22647216 | 299..482 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:41:10 Download gff for
BO11739.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18534197..18534480 | 15..298 | 99 | <- | Plus |
arm_2R | 18534536..18534721 | 299..482 | 98 | | Plus |
BO11739.5prime Sequence
491 bp (490 high quality bases) assembled on 2006-04-19
> BO11739.5prime
GAAGTTATCAGTCGACATGACCGTGGACGAACCGCAGATTGTGGCCATCA
TTGTCAGCCACAAGCCACAAGTGGGATACCTGAAGGAGGAGCCCACCTGG
ATCCGTTGTCCTTCGTGTGAGAAGTCTGGAACCAGTTTGGTGCAACTGGA
GTTGGTCACTTGCCTGCAGAGATTTCTGGGATTCACAAAACTTTGTAAAA
AATGGTCTGGCCGCCAGGACATCAATCACTATTGTTCACACTGCGGTTGC
TTCATTGGAAGATTTGTGCCCATCAGCTGCATGGAACGATGCATTTCGAG
ATCAGCCCGTAAACAGGCGGCCGTGGATGATATGACCCTGAAGACACGAC
CCAAGGATTGCGCTGAAAGGGCCCAGAAATCCAGGGAGAAAGTTCTGGCC
AGCAGGGAGAAGAAGAGAGCAGAGAAGGCAGCCAAGGATATGGACAAATC
TCAGACGCAAATAGCAGTACACCAAGCAAGCTTTCTAGACC
BO11739.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:29:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30195-PA | 462 | CG30195-RA | 1..459 | 17..475 | 2295 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:37:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30195-RA | 575 | CG30195-RA | 36..495 | 16..475 | 2300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:37:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22646696..22646976 | 475..195 | 1405 | 100 | Minus |
2R | 25286936 | 2R | 22647031..22647210 | 195..16 | 900 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:37:12 has no hits.
BO11739.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:15:17 Download gff for
BO11739.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30195-PA | 1..462 | 17..479 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:42:24 Download gff for
BO11739.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30195-PA | 1..462 | 17..479 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 03:07:42 Download gff for
BO11739.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30195-RA | 30..498 | 12..479 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:17:29 Download gff for
BO11739.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30195-RA | 30..498 | 12..479 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:17:29 Download gff for
BO11739.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22646692..22646975 | 196..479 | 99 | <- | Minus |
2R | 22647031..22647216 | 12..195 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 03:07:42 Download gff for
BO11739.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18534197..18534480 | 196..479 | 99 | <- | Minus |
arm_2R | 18534536..18534721 | 12..195 | 98 | | Minus |
BO11739.complete Sequence
493 bp assembled on 2006-10-11
GenBank Submission: FJ632175
> BO11739.complete
GAAGTTATCAGTCGACATGACCGTGGACGAACCGCAGATTGTGGCCATCA
TTGTCAGCCACAAGCCACAAGTGGGATACCTGAAGGAGGAGCCCACCTGG
ATCCGTTGTCCTTCGTGTGAGAAGTCTGGAACCAGTTTGGTGCAACTGGA
GTTGGTCACTTGCCTGCAGAGATTTCTGGGATTCACAAAACTTTGTAAAA
AATGGTCTGGCCGCCAGGACATCAATCACTATTGTTCACACTGCGGTTGC
TTCATTGGAAGATTTGTGCCCATCAGCTGCATGGAACGATGCATTTCGAG
ATCAGCCCGTAAACAGGCGGCCGTGGATGATATGACCCTGAAGACACGAC
CCAAGGATTGCGCTGAAAGGGCCCAGAAATCCAGGGAGAAAGTTCTGGCC
AGCAGGGAGAAGAAGAGAGCAGAGAAGGCAGCCAAGGATATGGACAAATC
TCAGACGCAAATAGCAGTACACCAAGCAAGCTTTCTAGACCAT
BO11739.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:18:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30195-RA | 462 | CG30195-PA | 1..459 | 17..475 | 2295 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:18:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30195-RA | 575 | CG30195-RA | 36..495 | 16..475 | 2300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:18:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22646696..22646976 | 475..195 | 1405 | 100 | Minus |
2R | 25286936 | 2R | 22647031..22647210 | 195..16 | 900 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:18:33 has no hits.
BO11739.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:49:52 Download gff for
BO11739.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30195-RA | 1..462 | 17..479 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:04:56 Download gff for
BO11739.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30195-RA | 26..494 | 12..479 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:07:01 Download gff for
BO11739.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30195-RA | 37..495 | 17..477 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:49:52 Download gff for
BO11739.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30195-RA | 26..494 | 12..479 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:18:26 Download gff for
BO11739.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30195-RA | 37..495 | 17..477 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:18:26 Download gff for
BO11739.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22646694..22646975 | 196..477 | 99 | <- | Minus |
2R | 22647031..22647209 | 17..195 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:07:01 Download gff for
BO11739.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18534199..18534480 | 196..477 | 99 | <- | Minus |
arm_2R | 18534536..18534714 | 17..195 | 100 | | Minus |
BO11739.pep Sequence
Translation from 16 to 493
> BO11739.pep
MTVDEPQIVAIIVSHKPQVGYLKEEPTWIRCPSCEKSGTSLVQLELVTCL
QRFLGFTKLCKKWSGRQDINHYCSHCGCFIGRFVPISCMERCISRSARKQ
AAVDDMTLKTRPKDCAERAQKSREKVLASREKKRAEKAAKDMDKSQTQIA
VHQASFLDH
BO11739.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:48:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30195-PA | 153 | CG30195-PA | 1..153 | 1..153 | 812 | 100 | Plus |
CG30196-PA | 147 | CG30196-PA | 16..145 | 13..137 | 203 | 34.6 | Plus |