Clone Sequence Records
BO11745.3prime Sequence
820 bp (778 high quality bases) assembled on 2006-04-19
> BO11745.3prime
ATGGTCTAGAAAGCTTGCGCCCTTGACCAGGACCTCGTAGTGGTCGATGC
GGACCTCCTCGCCGTCGAATGGGATGTAGAGGCAATGGTGTGACTGGTGG
ATCTTGCCGGGAGTGAGGCTGCCGTGGTGGTGGGCACGGCCGATGAACAG
GGGCTCTCCGTCGGAAGTGCGGCCGCAGAGAACGGCATTGCCGGGCACAT
TGCCATGGCTGTCGTGCACCCATCCGTACCCGTATCCGGCCAGCAGCTCG
TAGTCGTGCTTCACAACCTCACCGCCTCCGTAGGGCACATAGGCACAGCC
CTTGTTGGGGATCACCTTGGCTGGCAGCAAATCGCCCTCGTGGTAGGCGC
GACCCACATAGATCTGATCGCCATCGGCGTCGTGTCCGCCAACCACTGTT
CCGGGAACAATGCCGCGTCCGCTAGAGGCTATCCACGTCTCGGGCTGGAC
CAGCACTTCATAGGCTTCCAGACGGTGCTCCTGTCCGCCGTAGGGGATGT
ACAAACACTGGTGCGAGGGATGGACCTTGCCGGGGGTGAGGCTGCCCTGG
AAGTAACCACGGCCCACGTACAGGGGCTCACCCTCGCCAGTCTGGCCCAC
TTGGATGGCATGGGGCGGGACAGATCCACCACTGGACGGGATCCAGGAGA
AGTGATCACCGACAAGGACCTCGAAGTCATGCTTGCTGATCTCCTGACCG
CCCCATGGCACATAGGCCTGCTGCTTGCCGGGCACCACCTTCGCTGGCAG
CATCTCTCCATTGTGGTAGGCACGGCCCACAAAGATGGGATCCTGGTCGG
AGTCGTGGCCCGCTAGGATG
BO11745.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:29:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13321-PA | 861 | CG13321-RA | 57..858 | 820..19 | 3985 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:40:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13321-RB | 2043 | CG13321-RB | 602..1403 | 820..19 | 3995 | 99.9 | Minus |
CG13321-RA | 1060 | CG13321-RA | 161..962 | 820..19 | 3995 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:40:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12954007..12954349 | 820..478 | 1700 | 99.7 | Minus |
2R | 25286936 | 2R | 12954774..12955072 | 317..19 | 1495 | 100 | Minus |
2R | 25286936 | 2R | 12954499..12954666 | 479..312 | 840 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:40:56 has no hits.
BO11745.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:15:28 Download gff for
BO11745.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13321-PA | 57..861 | 16..820 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:42:39 Download gff for
BO11745.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13321-PA | 57..861 | 16..820 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 02:11:57 Download gff for
BO11745.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13321-RA | 161..972 | 7..820 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:45:45 Download gff for
BO11745.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13321-RA | 161..972 | 7..820 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:45:45 Download gff for
BO11745.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12954776..12955082 | 7..315 | 98 | | Minus |
2R | 12954007..12954349 | 478..820 | 99 | -> | Minus |
2R | 12954501..12954662 | 316..477 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 02:11:57 Download gff for
BO11745.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8841512..8841854 | 478..820 | 99 | -> | Minus |
arm_2R | 8842006..8842167 | 316..477 | 100 | -> | Minus |
arm_2R | 8842281..8842587 | 7..315 | 98 | | Minus |
BO11745.5prime Sequence
837 bp (756 high quality bases) assembled on 2006-04-19
> BO11745.5prime
GAAGTTATCAGTCGACATGGGAGACTACACCTGGATTAGCACCAACGTTT
ACGGATCCCTGCCCCCAGGAGCCATCCTAGCTGGCCACGACTCCGACCAG
GATCCCATCTTTGTGGGCCGTGCCTACCACAATGGAGAGATGCTGCCAGC
GAAGGTGGTGCCCGGCAAGCAGCAGGCCTATGTGCCATGGGGCGGTCAGG
AGATCAGCAAGCATGACTTCGAGGTCCTTGTCGGTGATCACTTCTCCTGG
ATCCCGTCCAGTGGTGGATCTGTCCCGCCCCATGCCATCCAAGTGGGCCA
GACTGGCGAGGGTGAGCCCCTGTACGTGGGCCGTGGTTACTTCCAGGGCA
GCCTCACCCCCGGCAAGGTCCATCCCTCGCACCAGTGTTTGTACATCCCC
TACGGCGGACAGGAGCACCGTCTGGAAGCCTATGAAGTGCTGGTCCAGCC
CGAGACGTGGATAGCCTCTAGCGGACGCGGCATTGTTCCCGGAACAGTGG
TTGGCGGACACGACGCCGATGGCGATCAGATCTATGTGGGTCGCGCCTAC
CACGAGGGCGATTTGCTGCCAGCCAAGGTGATCCCCAACAAGGGCTGTGC
CTATGTGCCCTACGGAGGCGGTGAGGTTGTGAAGCACGACTACGAGCTGC
TGGCCGGATACGGGTACGGATGGGTGCACGACAGCCATGGCAATGTGCCC
GGCAATGCCGTTCTCTGCGGCCGCACTTCCGACGGAGAGCCCCTGTTCAT
CGGCCGTGCCCACCACCACGGCAGCCTCACTCCCGGCAAGATCCACCAGT
CACACCATTTGCCTCTACATCCCTTTCGACGGCGAGG
BO11745.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:29:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13321-PA | 861 | CG13321-RA | 1..793 | 17..809 | 3965 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:16:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13321-RB | 2043 | CG13321-RB | 544..1365 | 15..837 | 4075 | 99.8 | Plus |
CG13321-RA | 1060 | CG13321-RA | 103..924 | 15..837 | 4075 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:16:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12953956..12954349 | 22..415 | 1970 | 100 | Plus |
2R | 25286936 | 2R | 12954774..12955034 | 576..837 | 1245 | 99.2 | Plus |
2R | 25286936 | 2R | 12954499..12954666 | 414..581 | 840 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:16:35 has no hits.
BO11745.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:15:29 Download gff for
BO11745.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13321-PA | 1..820 | 17..837 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:42:41 Download gff for
BO11745.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13321-PA | 1..820 | 17..837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:57:29 Download gff for
BO11745.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13321-RA | 98..924 | 7..837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:23:56 Download gff for
BO11745.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13321-RA | 98..924 | 7..837 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:23:56 Download gff for
BO11745.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12953956..12954349 | 22..415 | 100 | -> | Plus |
2R | 12954501..12954662 | 416..577 | 100 | -> | Plus |
2R | 12954776..12955034 | 578..837 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:57:29 Download gff for
BO11745.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8841461..8841854 | 22..415 | 100 | -> | Plus |
arm_2R | 8842006..8842167 | 416..577 | 100 | -> | Plus |
arm_2R | 8842281..8842539 | 578..837 | 99 | | Plus |
BO11745.complete Sequence
892 bp assembled on 2006-10-11
GenBank Submission: FJ632176
> BO11745.complete
GAAGTTATCAGTCGACATGGGAGACTACACCTGGATTAGCACCAACGTTT
ACGGATCCCTGCCCCCAGGAGCCATCCTAGCTGGCCACGACTCCGACCAG
GATCCCATCTTTGTGGGCCGTGCCTACCACAATGGAGAGATGCTGCCAGC
GAAGGTGGTGCCCGGCAAGCAGCAGGCCTATGTGCCATGGGGCGGTCAGG
AGATCAGCAAGCATGACTTCGAGGTCCTTGTCGGTGATCACTTCTCCTGG
ATCCCGTCCAGTGGTGGATCTGTCCCGCCCCATGCCATCCAAGTGGGCCA
GACTGGCGAGGGTGAGCCCCTGTACGTGGGCCGTGGTTACTTCCAGGGCA
GCCTCACCCCCGGCAAGGTCCATCCCTCGCACCAGTGTTTGTACATCCCC
TACGGCGGACAGGAGCACCGTCTGGAAGCCTATGAAGTGCTGGTCCAGCC
CGAGACGTGGATAGCCTCTAGCGGACGCGGCATTGTTCCCGGAACAGTGG
TTGGCGGACACGACGCCGATGGCGATCAGATCTATGTGGGTCGCGCCTAC
CACGAGGGCGATTTGCTGCCAGCCAAGGTGATCCCCAACAAGGGCTGTGC
CTATGTGCCCTACGGAGGCGGTGAGGTTGTGAAGCACGACTACGAGCTGC
TGGCCGGATACGGGTACGGATGGGTGCACGACAGCCATGGCAATGTGCCC
GGCAATGCCGTTCTCTGCGGCCGCACTTCCGACGGAGAGCCCCTGTTCAT
CGGCCGTGCCCACCACCACGGCAGCCTCACTCCCGGCAAGATCCACCAGT
CACACCATTGCCTCTACATCCCATTCGACGGCGAGGAGGTCCGCATCGAC
CACTACGAGGTCCTGGTCAAGGGCGCAAGCTTTCTAGACCAT
BO11745.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:30:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13321-RB | 861 | CG13321-PB | 1..858 | 17..874 | 4290 | 100 | Plus |
CG13321-RA | 861 | CG13321-PA | 1..858 | 17..874 | 4290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:30:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13321-RB | 2043 | CG13321-RB | 544..1403 | 15..874 | 4300 | 100 | Plus |
CG13321-RA | 1060 | CG13321-RA | 103..962 | 15..874 | 4300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:30:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12953956..12954349 | 22..415 | 1970 | 100 | Plus |
2R | 25286936 | 2R | 12954774..12955072 | 576..874 | 1495 | 100 | Plus |
2R | 25286936 | 2R | 12954499..12954666 | 414..581 | 840 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:30:40 has no hits.
BO11745.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:04 Download gff for
BO11745.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13321-RA | 1..861 | 17..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:38:42 Download gff for
BO11745.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13321-RA | 95..969 | 7..886 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:45:08 Download gff for
BO11745.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13321-RA | 105..962 | 17..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:04 Download gff for
BO11745.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13321-RA | 95..969 | 7..886 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:13:18 Download gff for
BO11745.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13321-RA | 105..962 | 17..876 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:13:18 Download gff for
BO11745.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12953953..12954349 | 17..415 | 98 | -> | Plus |
2R | 12954501..12954662 | 416..577 | 100 | -> | Plus |
2R | 12954776..12955072 | 578..876 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:45:08 Download gff for
BO11745.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8841458..8841854 | 17..415 | 98 | -> | Plus |
arm_2R | 8842006..8842167 | 416..577 | 100 | -> | Plus |
arm_2R | 8842281..8842577 | 578..876 | 99 | | Plus |
BO11745.pep Sequence
Translation from 16 to 892
> BO11745.pep
MGDYTWISTNVYGSLPPGAILAGHDSDQDPIFVGRAYHNGEMLPAKVVPG
KQQAYVPWGGQEISKHDFEVLVGDHFSWIPSSGGSVPPHAIQVGQTGEGE
PLYVGRGYFQGSLTPGKVHPSHQCLYIPYGGQEHRLEAYEVLVQPETWIA
SSGRGIVPGTVVGGHDADGDQIYVGRAYHEGDLLPAKVIPNKGCAYVPYG
GGEVVKHDYELLAGYGYGWVHDSHGNVPGNAVLCGRTSDGEPLFIGRAHH
HGSLTPGKIHQSHHCLYIPFDGEEVRIDHYEVLVKGASFLDH
BO11745.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13321-PB | 286 | CG13321-PB | 1..286 | 1..286 | 1596 | 100 | Plus |
CG13321-PA | 286 | CG13321-PA | 1..286 | 1..286 | 1596 | 100 | Plus |
CG44250-PB | 286 | CG44250-PB | 2..285 | 3..285 | 878 | 56.5 | Plus |
CG44250-PC | 297 | CG44250-PC | 13..296 | 3..285 | 878 | 56.5 | Plus |
CG32633-PB | 285 | CG32633-PB | 1..284 | 1..285 | 811 | 53.3 | Plus |
CG13321-PB | 286 | CG13321-PB | 5..149 | 147..290 | 444 | 52.4 | Plus |
CG13321-PA | 286 | CG13321-PA | 5..149 | 147..290 | 444 | 52.4 | Plus |