Clone BO11746 Report

Search the DGRC for BO11746

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:117
Well:46
Vector:pDNR-Dual
Associated Gene/TranscriptIdgf4-RA
Protein status:BO11746.pep: validated full length
Sequenced Size:1360

Clone Sequence Records

BO11746.3prime Sequence

860 bp (782 high quality bases) assembled on 2006-04-19

> BO11746.3prime
ATGGTCTAGAAAGCTTGCCAACTTGCTCTTAACCTGGCGCAGGATGGGGA
ACTTGTCGTGGCCAGTGCAGCCGCCGCGGAAGTCATCGAAGCTCAGATCG
ACAACAGCAATGCCGCCGAGACCCTCGCGCTTAACATACTCCGCCTTGAT
GGCCGCCGTATCGGGATCCTCGTAGCCCACCCAGACTCCGTTTTCACCGC
TGTCGTCGGCGGAGCGGTAGGCATAGCTTCCAAAGCGCTTGGTCGGATCA
CCAACCTTTCGCAGCGGACCATCGGCGCCCTTCAGATGCTGATTGGCGGG
ATTTGGGAGCTTGGCGCACACCTCTGGCCAGCTAAGAAGTCCGGGTATCT
GGGTCTGGGTTCCGGCAGGAGCCACACCATCAGCCTCGGCAACCGGTGGA
AGTCCAGTCAGTCCCGAATCCTTGGTCAATTTCCAGGCACGTCCATAGGT
GGCAATGCCCACGTTAATCTTAGCGGCCGGAGCACGGTTTCCGGTCCAGT
ATTTCACCTGGTAGTTGACATTGAACTCCGGATTGCGCTCGTTCAGCTCG
TAGATCGGTGCCGGGAAGTCGGCCACCTCGTTGTTGCGCTCGGGGGTCTG
GAAGTCGTAGGTGTGCAGGTTCACGTAGTCCAAGTTATTGATAATAGCGG
GCACATCGAAGAACAGCGAAGAGTTCACATTGGGCAGGACACTGAGACCC
AGGATGTAGCCATCGGGACGGAAGGCGTTCTTCAGTTCGCGAACCAGGGC
GGTGAAGGCCTCCTTGTGCTCCTCGGCCTTCTCGTCGACGACATGATCAC
CGCTGAAGATCTTCTTGAATCCCTTCCAGAACTTGCCAATGCTGCCGTGC
ACCTTCTTTG

BO11746.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:29:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG1780-PA 1329 Idgf4-RA 485..1326 860..19 4210 100 Minus
CG1780-PB 1329 Idgf4-RB 485..1326 860..19 4210 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:00:29
Subject Length Description Subject Range Query Range Score Percent Strand
Idgf4-RC 1807 CG1780-RC 528..1369 860..19 4210 100 Minus
Idgf4-RB 1541 CG1780-RB 555..1396 860..19 4210 100 Minus
Idgf4-RA 1514 CG1780-RA 528..1369 860..19 4210 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:00:21
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9928411..9929057 19..665 3235 100 Plus
X 23542271 X 9929172..9929366 666..860 975 100 Plus
2R 25286936 2R 16692731..16692873 858..716 250 78.3 Minus
2R 25286936 2R 18394919..18395040 264..143 190 77 Minus
Blast to na_te.dros performed on 2015-02-12 12:00:25 has no hits.

BO11746.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:15:30 Download gff for BO11746.3prime
Subject Subject Range Query Range Percent Splice Strand
Idgf4-PA 485..1329 18..860 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:42:42 Download gff for BO11746.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1780-PB 485..1329 18..860 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:30:15 Download gff for BO11746.3prime
Subject Subject Range Query Range Percent Splice Strand
Idgf4-RA 559..1410 8..860 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:12:22 Download gff for BO11746.3prime
Subject Subject Range Query Range Percent Splice Strand
Idgf4-RA 528..1379 8..860 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:12:22 Download gff for BO11746.3prime
Subject Subject Range Query Range Percent Splice Strand
X 9928401..9929057 8..665 99 <- Plus
X 9929172..9929366 666..860 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:30:15 Download gff for BO11746.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9822434..9823090 8..665 99 <- Plus
arm_X 9823205..9823399 666..860 100   Plus

BO11746.5prime Sequence

914 bp (785 high quality bases) assembled on 2006-04-19

> BO11746.5prime
GAAGTTATCAGTCGACATGAAGCTCTACGCCCTGTTCTCCCTTCTGGTGG
GATCTTTGGCCATTGGTCAGATTTCCGCCGCCGGATCTCATCATCTACTT
TGTTACTATGACGGCAACAGTTTTGTCCGCGAGGGCCTCTCCAAGCTGAT
CCTAACCGATCTGGAGCCCGCCCTGCAGTACTGCACCCATCTGGTCTACG
GATATGCCGGCATTAATCCCTCGAGCAACAAGCTGGTCAGCAACAATGAG
AAATTGGACCTGGATCTGGGCAGCAGCCTGTTCCGCCAGGTGACCGGATT
GAAGCGCAAGTACCCAGCCCTCAAGGTCCTGCTTAGCGTGGGTGGCGACA
AGGACACCGTGGATCCAGAGAACAACAAGTATCTGACCCTGCTGGAGAGC
AGCAATGCCAGGATTCCGTTCATCAACAGTGCTCACTCGCTGGTGAAGAC
CTACGGTTTCGATGGCCTCGATCTCGGCTGGCAGTTCCCCAAGAATAAGC
CAAAGAAGGTGCACGGCAGCATTGGCAAGTTCTGGAAGGGATTCAAGAAG
ATCTTCAGCGGTGATCATGTCGTCGACGAGAAGGCCGAGGAGCACAAGGA
GGCCTTCACCGCCCTGGTTCGCGAACTGAAGAACGCCTTCCGTCCCGATG
GCTACATCCTGGGTCTCAGTGTCCTGCCCAATGTGAACTCTTCGCTGTTC
TTCGATGTGCCCGCTATTATCAATAACTTGGACTACGTGAACCTGCACAC
CTACGACTTCCAGACCCCCGAGCGCAACAACGAGGTGGGCGACTTCCCGG
CACCGATCTACGAGCTGAACGAGCGCAATCCGGAGTTCAATGTCAACTAC
CAGGTGAAATACTGGGACCGGAAACCGTGCTCCGGGCCGCTAAGATTAAC
GTGGGCATTTGCCA

BO11746.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:29:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG1780-PA 1329 Idgf4-RA 1..849 17..865 4220 99.8 Plus
CG1780-PB 1329 Idgf4-RB 1..849 17..865 4220 99.8 Plus
CG5210-PA 1359 Chit-RA 446..525 435..514 225 91.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:14:21
Subject Length Description Subject Range Query Range Score Percent Strand
Idgf4-RC 1807 CG1780-RC 44..934 17..909 4400 99.7 Plus
Idgf4-RB 1541 CG1780-RB 71..961 17..909 4400 99.7 Plus
Idgf4-RA 1514 CG1780-RA 44..934 17..909 4400 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 07:14:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9929172..9929733 695..134 2810 100 Minus
X 23542271 X 9928846..9929057 909..696 955 98.6 Minus
X 23542271 X 9930354..9930472 135..17 595 100 Minus
2R 25286936 2R 16692663..16692873 435..645 485 82 Plus
2L 23513712 2L 16449489..16449564 441..516 185 82.9 Plus
Blast to na_te.dros performed on 2015-02-10 07:14:18 has no hits.

BO11746.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:15:31 Download gff for BO11746.5prime
Subject Subject Range Query Range Percent Splice Strand
Idgf4-PA 1..894 17..913 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:42:43 Download gff for BO11746.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1780-PB 1..894 17..913 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 09:09:14 Download gff for BO11746.5prime
Subject Subject Range Query Range Percent Splice Strand
Idgf4-RA 67..968 9..913 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:45:21 Download gff for BO11746.5prime
Subject Subject Range Query Range Percent Splice Strand
Idgf4-RA 36..937 9..913 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 07:45:21 Download gff for BO11746.5prime
Subject Subject Range Query Range Percent Splice Strand
X 9928843..9929057 696..913 98 <- Minus
X 9929172..9929732 135..695 100 <- Minus
X 9930355..9930477 9..134 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 09:09:14 Download gff for BO11746.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9822876..9823090 696..913 98 <- Minus
arm_X 9823205..9823765 135..695 100 <- Minus
arm_X 9824388..9824510 9..134 96   Minus

BO11746.complete Sequence

1360 bp assembled on 2006-10-11

GenBank Submission: FJ632177

> BO11746.complete
GAAGTTATCAGTCGACATGAAGCTCTACGCCCTGTTCTCCCTTCTGGTGG
GATCTTTGGCCATTGGTCAGATTTCCGCCGCCGGATCTCATCATCTACTT
TGTTACTATGACGGCAACAGTTTTGTCCGCGAGGGCCTCTCCAAGCTGAT
CCTAACCGATCTGGAGCCCGCCCTGCAGTACTGCACCCATCTGGTCTACG
GATATGCCGGCATTAATCCCTCGAGCAACAAGCTGGTCAGCAACAATGAG
AAATTGGACCTGGATCTGGGCAGCAGCCTGTTCCGCCAGGTGACCGGATT
GAAGCGCAAGTACCCAGCCCTCAAGGTCCTGCTTAGCGTGGGTGGCGACA
AGGACACCGTGGATCCAGAGAACAACAAGTATCTGACCCTGCTGGAGAGC
AGCAATGCCAGGATTCCGTTCATCAACAGTGCTCACTCGCTGGTGAAGAC
CTACGGTTTCGATGGCCTCGATCTCGGCTGGCAGTTCCCCAAGAATAAGC
CAAAGAAGGTGCACGGCAGCATTGGCAAGTTCTGGAAGGGATTCAAGAAG
ATCTTCAGCGGTGATCATGTCGTCGACGAGAAGGCCGAGGAGCACAAGGA
GGCCTTCACCGCCCTGGTTCGCGAACTGAAGAACGCCTTCCGTCCCGATG
GCTACATCCTGGGTCTCAGTGTCCTGCCCAATGTGAACTCTTCGCTGTTC
TTCGATGTGCCCGCTATTATCAATAACTTGGACTACGTGAACCTGCACAC
CTACGACTTCCAGACCCCCGAGCGCAACAACGAGGTGGCCGACTTCCCGG
CACCGATCTACGAGCTGAACGAGCGCAATCCGGAGTTCAATGTCAACTAC
CAGGTGAAATACTGGACCGGAAACCGTGCTCCGGCCGCTAAGATTAACGT
GGGCATTGCCACCTATGGACGTGCCTGGAAATTGACCAAGGATTCGGGAC
TGACTGGACTTCCACCGGTTGCCGAGGCTGATGGTGTGGCTCCTGCCGGA
ACCCAGACCCAGATACCCGGACTTCTTAGCTGGCCAGAGGTGTGCGCCAA
GCTCCCAAATCCCGCCAATCAGCATCTGAAGGGCGCCGATGGTCCGCTGC
GAAAGGTTGGTGATCCGACCAAGCGCTTTGGAAGCTATGCCTACCGCTCC
GCCGACGACAGCGGTGAAAACGGAGTCTGGGTGGGCTACGAGGATCCCGA
TACGGCGGCCATCAAGGCGGAGTATGTTAAGCGCGAGGGTCTCGGCGGCA
TTGCTGTTGTCGATCTGAGCTTCGATGACTTCCGCGGCGGCTGCACTGGC
CACGACAAGTTCCCCATCCTGCGCCAGGTTAAGAGCAAGTTGGCAAGCTT
TCTAGACCAT

BO11746.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:25:57
Subject Length Description Subject Range Query Range Score Percent Strand
Idgf4-RC 1329 CG1780-PC 1..1326 17..1342 6630 100 Plus
Idgf4-RB 1329 CG1780-PB 1..1326 17..1342 6630 100 Plus
Idgf4-RA 1329 CG1780-PA 1..1326 17..1342 6630 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:25:59
Subject Length Description Subject Range Query Range Score Percent Strand
Idgf4-RC 1807 CG1780-RC 44..1369 17..1342 6630 100 Plus
Idgf4-RB 1541 CG1780-RB 71..1396 17..1342 6630 100 Plus
Idgf4-RA 1514 CG1780-RA 44..1369 17..1342 6630 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:25:56
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9928411..9929057 1342..696 3235 100 Minus
X 23542271 X 9929172..9929733 695..134 2810 100 Minus
X 23542271 X 9930354..9930472 135..17 595 100 Minus
2R 25286936 2R 16692663..16692873 435..645 485 82 Plus
2R 25286936 2R 18394919..18395040 1097..1218 190 77 Plus
2L 23513712 2L 16449489..16449564 441..516 185 82.9 Plus
Blast to na_te.dros performed on 2014-11-27 20:25:56 has no hits.

BO11746.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:05 Download gff for BO11746.complete
Subject Subject Range Query Range Percent Splice Strand
Idgf4-RB 1..1329 17..1343 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:57:09 Download gff for BO11746.complete
Subject Subject Range Query Range Percent Splice Strand
Idgf4-RB 97..1437 12..1353 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:07:39 Download gff for BO11746.complete
Subject Subject Range Query Range Percent Splice Strand
Idgf4-RA 75..1400 17..1344 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:05 Download gff for BO11746.complete
Subject Subject Range Query Range Percent Splice Strand
Idgf4-RB 97..1437 12..1353 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:21:16 Download gff for BO11746.complete
Subject Subject Range Query Range Percent Splice Strand
Idgf4-RA 44..1369 17..1344 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:21:16 Download gff for BO11746.complete
Subject Subject Range Query Range Percent Splice Strand
X 9928409..9929057 696..1344 99 <- Minus
X 9929172..9929732 135..695 100 <- Minus
X 9930355..9930472 17..134 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:07:39 Download gff for BO11746.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9822442..9823090 696..1344 99 <- Minus
arm_X 9823205..9823765 135..695 100 <- Minus
arm_X 9824388..9824505 17..134 100   Minus

BO11746.pep Sequence

Translation from 16 to 1360

> BO11746.pep
MKLYALFSLLVGSLAIGQISAAGSHHLLCYYDGNSFVREGLSKLILTDLE
PALQYCTHLVYGYAGINPSSNKLVSNNEKLDLDLGSSLFRQVTGLKRKYP
ALKVLLSVGGDKDTVDPENNKYLTLLESSNARIPFINSAHSLVKTYGFDG
LDLGWQFPKNKPKKVHGSIGKFWKGFKKIFSGDHVVDEKAEEHKEAFTAL
VRELKNAFRPDGYILGLSVLPNVNSSLFFDVPAIINNLDYVNLHTYDFQT
PERNNEVADFPAPIYELNERNPEFNVNYQVKYWTGNRAPAAKINVGIATY
GRAWKLTKDSGLTGLPPVAEADGVAPAGTQTQIPGLLSWPEVCAKLPNPA
NQHLKGADGPLRKVGDPTKRFGSYAYRSADDSGENGVWVGYEDPDTAAIK
AEYVKREGLGGIAVVDLSFDDFRGGCTGHDKFPILRQVKSKLASFLDH

BO11746.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:14:54
Subject Length Description Subject Range Query Range Score Percent Strand
Idgf4-PC 442 CG1780-PC 1..442 1..442 2340 100 Plus
Idgf4-PB 442 CG1780-PB 1..442 1..442 2340 100 Plus
Idgf4-PA 442 CG1780-PA 1..442 1..442 2340 100 Plus
CG5210-PB 452 CG5210-PB 3..452 1..444 1529 63.4 Plus
CG5210-PA 452 CG5210-PA 3..452 1..444 1529 63.4 Plus