Clone Sequence Records
BO11748.3prime Sequence
853 bp (816 high quality bases) assembled on 2006-04-19
> BO11748.3prime
ATGGTCTAGAAAGCTTGCGCTCCAAGCATATCCCTCATCTCTTTGATAGC
AAACGCGCTCTAAAAGACCTACGGCATGTTGGCCCGTGCGGCAGATGGAG
CCAACTACTGCCGGCAGCAGACCACACTCCGAAAGATTCTGCTCGCCAAA
GACCTGCCCGGCGGCATCTTCTCCTTCCGCATCTGACTGTGGCGTCTCCG
GAGTTTCAAGCAGCTTTTGGGTGGCCTTGCTAAAGGCCAGCGTATTGATG
CTGCTGGCCAGCGTGGAGCTAAACATCTGGCGCGTCTCGGACAGCAGCTC
CGCCACACTGGGCAGGAATGTAGGTAGGATTAGGCCCTTAATGTCTATGC
TAAAGTAGTCGACGCCATCCAGACGCACTTTCTTGGACCGCGGAACCAAG
TGCTGCATGGTGGCCTTGGGGAAGGCCACTGGCGACAGCAGAGTGGGAGG
CACTCCGGCCAGACGGCCCACTGTGCTGATGGCACTCTTGGCATTTAGCA
GATAGCTAAAGAATCCCTGGCACTCCACGCCATCGACCAGCAGCAAGGAG
TTGTCGCTAAAGTCCTCTCGCATTTCGGCAGCTTGTTGCTTCCTGGCATG
GGAGGACTGGATACGTCGCAGCTCACGCTCATCCACGCCCAAGCTCTCCA
GCCAGTCCTCGTCGTCGTCTTCATCTTCCTGTGCCGGCGGAGGAGCATCT
TCGCCCGCTTCTGGACCTAGCGAGGTGGTAGTGCTCTCCTCGTTAAAACT
GTTGTCGTGCGCGTTTCCACTGTTATCGCTCTTAAGAGGCATGCTGAACT
CGATCCCCTCCTGTCGCAGAGCTTGCCGCATTCCCCGAGTCGACGGCGTG
ACC
BO11748.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:29:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2669-PA | 1707 | CG2669-RA | 870..1704 | 853..19 | 4175 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:27:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hd-RA | 1927 | CG2669-RA | 1007..1841 | 853..19 | 4175 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:27:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5372678..5373512 | 19..853 | 4175 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 12:27:37 has no hits.
BO11748.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:15:34 Download gff for
BO11748.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2669-PA | 870..1707 | 18..853 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:42:48 Download gff for
BO11748.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2669-PA | 870..1707 | 18..853 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 23:29:01 Download gff for
BO11748.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hd-RA | 1007..1841 | 19..853 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:57:17 Download gff for
BO11748.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hd-RA | 1007..1841 | 19..853 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:57:17 Download gff for
BO11748.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5372678..5373512 | 19..853 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 23:29:01 Download gff for
BO11748.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1198400..1199234 | 19..853 | 100 | | Plus |
BO11748.5prime Sequence
854 bp (732 high quality bases) assembled on 2006-04-19
> BO11748.5prime
GAAGTTATCAGTCGACATGTCCACCGAAGCGAGTGTGGCTTCCAAATGGA
CGCGCCCAGATGACTTCATCAAACTGCAGCGGCTCAAGCAGAAGAAGAAC
AAATTGGCAGCCCGCGTGAGCAACAACAACAATAGGCGGCCAAGACACCA
AGTGGATGAGACGGATAAAAGCAAGCTACTGGAGGCTAAGCTCGCCCAGA
AGCGAAAAAATCCGTTTGCGAAATCCACAGCTGATGCCAAGAAACTGCGC
GTTGATCCGCAACTGGCGGACCTCGAACCAGTGGTCACTGCCTCCTCCTG
CTTTGTGCGGGAAACGCCCACGCGCCCGGCGCCCGCCAAATTCGTGCTCC
AGAAGTACGACCCGCAGGCCTTTGCCAAGCTCTTCCAGCATCCCCAAATC
AACGCTGAGGACGAGGACGATGCGGAGTTGGCCGCCCGGCAGAAGCACAC
CGCCCACCTACCTGTGGACTGGTCCCTGAAGACGCGAGCCCGTTTCTTCT
GTCCCACGGAACTGCCTGCCATCCAACTGAAGACCTCGCAGCTGGCCAGC
GGACTCACCAGCTTCGTGCGCTGCATGGACCCGCAGCGAACGGAGAGCAC
GCTGGATATCTCGGACGCAACGCGGTTCAACCAATGCAATTACTACTGGC
AGCACCCGCACCTGCCCTGGCTGACGCTCTACCCGCGCACCGCCAAGGAG
AACGTGGGCGTGGTGGTGGGTGAGCGGGAGCGCAAGGCCCTGGCCGAGGA
GTGGGACTTCAGCTTCCGGGGCCTATTTCAGCTGCTGCGTGCCCGCCAGT
GCCCGTACTTCTACCTGTGTGCCCACACTTTTACGGTGCTGTTCCGAGCT
GCCG
BO11748.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:29:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2669-PA | 1707 | CG2669-RA | 1..838 | 17..854 | 4165 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:01:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hd-RA | 1927 | CG2669-RA | 136..975 | 15..854 | 4185 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:01:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5373544..5374175 | 854..223 | 3145 | 99.8 | Minus |
3R | 32079331 | 3R | 5374233..5374390 | 222..65 | 790 | 100 | Minus |
3R | 32079331 | 3R | 5374450..5374499 | 64..15 | 250 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 11:01:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
invader2 | 5124 | invader2 INVADER2 5124bp | 639..693 | 78..131 | 119 | 70.9 | Plus |
BO11748.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:15:35 Download gff for
BO11748.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2669-PA | 1..838 | 17..854 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:42:49 Download gff for
BO11748.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2669-PA | 1..838 | 17..854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:27:36 Download gff for
BO11748.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hd-RA | 130..975 | 9..854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:13:50 Download gff for
BO11748.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hd-RA | 130..975 | 9..854 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:13:50 Download gff for
BO11748.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5373544..5374175 | 223..854 | 99 | <- | Minus |
3R | 5374233..5374390 | 65..222 | 100 | <- | Minus |
3R | 5374450..5374505 | 9..64 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:27:36 Download gff for
BO11748.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1199266..1199897 | 223..854 | 99 | <- | Minus |
arm_3R | 1199955..1200112 | 65..222 | 100 | <- | Minus |
arm_3R | 1200172..1200227 | 9..64 | 94 | | Minus |
BO11748.complete Sequence
1738 bp assembled on 2008-01-17
GenBank Submission: FJ632178
> BO11748.complete
GAAGTTATCAGTCGACATGTCCACCGAAGCGAGTGTGGCTTCCAAATGGA
CGCGCCCAGATGACTTCATCAAACTGCAGCGGCTCAAGCAGAAGAAGAAC
AAATTGGCAGCCCGCGTGAGCAACAACAACAATAGGCGGCCAAGACACCA
AGTGGATGAGACGGATAAAAGCAAGCTACTGGAGGCTAAGCTCGCCCAGA
AGCGAAAAAATCCGTTTGCGAAATCCACAGCTGATGCCAAGAAACTGCGC
GTTGATCCGCAACTGGCGGACCTCGAACCAGTGGTCACTGCCTCCTCCTG
CTTTGTGCGGGAAACGCCCACGCGCCCGGCGCCCGCCAAATTCGTGCTCC
AGAAGTACGACCCGCAGGCCTTTGCCAAGCTCTTCCAGCATCCCCAAATC
AACGCTGAGGACGAGGACGATGCGGAGTTGGCCGCCCGGCAGAAGCACAC
CGCCCACCTACCTGTGGACTGGTCCCTGAAGACGCGAGCCCGTTTCTTCT
GTCCCACGGAACTGCCTGCCATCCAACTGAAGACCTCGCAGCTGGCCAGC
GGACTCACCAGCTTCGTGCGCTGCATGGACCCGCAGCGAACGGAGAGCAC
GCTGGATATCTCGGACGCAACGCGGTTCAACCAATGCAATTACTACTGGC
AGCACCCGCACCTGCCCTGGCTGACGCTCTACCCGCGCACCGCCAAGGAG
AACGTGGGCGTGGTGGTGGGTGAGCGGGAGCGCAAGGCCCTGGCCGAGGA
GTGGGACTTCAGCTTCCGGGGCCTATTTCAGCTGCTGCGTGCCCGCCAGT
GCCCGTACTTCTACCTGTGTGCCAACACTTTTACGGTGCTGTTCCGAGCT
GCCGGAGTTGGCGGTCGGCCGGAGAGCCACGCCTTGGTCACGCCGTCGAC
TCGGGGAATGCGGCAAGCTCTGCGACAGGAGGGGATCGAGTTCAGCATGC
CTCTTAAGAGCGATAACAGTGGAAACGCGCACGACAACAGTTTTAACGAG
GAGAGCACTACCACCTCGCTAGGTCCAGAAGCGGGCGAAGATGCTCCTCC
GCCGGCACAGGAAGATGAAGACGACGACGAGGACTGGCTGGAGAGCTTGG
GCGTGGATGAGCGTGAGCTGCGACGTATCCAGTCCTCCCATGCCAGGAAG
CAACAAGCTGCCGAAATGCGAGAGGACTTTAGCGACAACTCCTTGCTGCT
GGTCGATGGCGTGGAGTGCCAGGGATTCTTTAGCTATCTGCTAAATGCCA
AGAGTGCCATCAGCACAGTGGGCCGTCTGGCCGGAGTGCCTCCCACTCTG
CTGTCGCCAGTGGCCTTCCCCAAGGCCACCATGCAGCACTTGGTTCCGCG
GTCCAAGAAAGTGCGTCTGGATGGCGTCGACTACTTTAGCATAGACATTA
AGGGCCTAATCCTACCTACATTCCTGCCCAGTGTGGCGGAGCTGCTGTCC
GAGACGCGCCAGATGTTTAGCTCCACGCTGGCCAGCAGCATCAATACGCT
GGCCTTTAGCAAGGCCACCCAAAAGCTGCTTGAAACTCCGGAGACGCCAC
AGTCAGATGCGGAAGGAGAAGATGCCGCCGGGCAGGTCTTTGGCGAGCAG
AATCTTTCGGAGTGTGGTCTGCTGCCGGCAGTAGTTGGCTCCATCTGCCG
CACGGGCCAACATGCCGTAGGTCTTTTAGAGCGCGTTTGCTATCAAAGAG
ATGAGGGATATGCTTGGAGCGCAAGCTTTCTAGACCAT
BO11748.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:28:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hd-RA | 1707 | CG2669-PA | 1..1704 | 17..1720 | 8520 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:29:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hd-RA | 1927 | CG2669-RA | 136..1841 | 15..1720 | 8530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:28:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5372678..5374175 | 1720..223 | 7490 | 100 | Minus |
3R | 32079331 | 3R | 5374233..5374390 | 222..65 | 790 | 100 | Minus |
3R | 32079331 | 3R | 5374450..5374499 | 64..15 | 250 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 14:28:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
invader2 | 5124 | invader2 INVADER2 5124bp | 639..693 | 78..131 | 119 | 70.9 | Plus |
BO11748.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:59:01 Download gff for
BO11748.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hd-RA | 1..1707 | 17..1721 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:36:11 Download gff for
BO11748.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hd-RA | 135..1838 | 17..1722 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:44:19 Download gff for
BO11748.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hd-RA | 138..1841 | 17..1722 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:59:01 Download gff for
BO11748.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hd-RA | 127..1838 | 9..1720 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:12:37 Download gff for
BO11748.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hd-RA | 138..1841 | 17..1722 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:12:37 Download gff for
BO11748.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5372676..5374175 | 223..1722 | 99 | <- | Minus |
3R | 5374233..5374390 | 65..222 | 100 | <- | Minus |
3R | 5374450..5374497 | 17..64 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:44:19 Download gff for
BO11748.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1198398..1199897 | 223..1722 | 99 | <- | Minus |
arm_3R | 1199955..1200112 | 65..222 | 100 | <- | Minus |
arm_3R | 1200172..1200219 | 17..64 | 100 | | Minus |
BO11748.pep Sequence
Translation from 16 to 1738
> BO11748.pep
MSTEASVASKWTRPDDFIKLQRLKQKKNKLAARVSNNNNRRPRHQVDETD
KSKLLEAKLAQKRKNPFAKSTADAKKLRVDPQLADLEPVVTASSCFVRET
PTRPAPAKFVLQKYDPQAFAKLFQHPQINAEDEDDAELAARQKHTAHLPV
DWSLKTRARFFCPTELPAIQLKTSQLASGLTSFVRCMDPQRTESTLDISD
ATRFNQCNYYWQHPHLPWLTLYPRTAKENVGVVVGERERKALAEEWDFSF
RGLFQLLRARQCPYFYLCANTFTVLFRAAGVGGRPESHALVTPSTRGMRQ
ALRQEGIEFSMPLKSDNSGNAHDNSFNEESTTTSLGPEAGEDAPPPAQED
EDDDEDWLESLGVDERELRRIQSSHARKQQAAEMREDFSDNSLLLVDGVE
CQGFFSYLLNAKSAISTVGRLAGVPPTLLSPVAFPKATMQHLVPRSKKVR
LDGVDYFSIDIKGLILPTFLPSVAELLSETRQMFSSTLASSINTLAFSKA
TQKLLETPETPQSDAEGEDAAGQVFGEQNLSECGLLPAVVGSICRTGQHA
VGLLERVCYQRDEGYAWSASFLDH
BO11748.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:39:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hd-PA | 568 | CG2669-PA | 1..568 | 1..568 | 2949 | 100 | Plus |