Clone BO11748 Report

Search the DGRC for BO11748

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:117
Well:48
Vector:pDNR-Dual
Associated Gene/Transcripthd-RA
Protein status:BO11748.pep:
Sequenced Size:1738

Clone Sequence Records

BO11748.3prime Sequence

853 bp (816 high quality bases) assembled on 2006-04-19

> BO11748.3prime
ATGGTCTAGAAAGCTTGCGCTCCAAGCATATCCCTCATCTCTTTGATAGC
AAACGCGCTCTAAAAGACCTACGGCATGTTGGCCCGTGCGGCAGATGGAG
CCAACTACTGCCGGCAGCAGACCACACTCCGAAAGATTCTGCTCGCCAAA
GACCTGCCCGGCGGCATCTTCTCCTTCCGCATCTGACTGTGGCGTCTCCG
GAGTTTCAAGCAGCTTTTGGGTGGCCTTGCTAAAGGCCAGCGTATTGATG
CTGCTGGCCAGCGTGGAGCTAAACATCTGGCGCGTCTCGGACAGCAGCTC
CGCCACACTGGGCAGGAATGTAGGTAGGATTAGGCCCTTAATGTCTATGC
TAAAGTAGTCGACGCCATCCAGACGCACTTTCTTGGACCGCGGAACCAAG
TGCTGCATGGTGGCCTTGGGGAAGGCCACTGGCGACAGCAGAGTGGGAGG
CACTCCGGCCAGACGGCCCACTGTGCTGATGGCACTCTTGGCATTTAGCA
GATAGCTAAAGAATCCCTGGCACTCCACGCCATCGACCAGCAGCAAGGAG
TTGTCGCTAAAGTCCTCTCGCATTTCGGCAGCTTGTTGCTTCCTGGCATG
GGAGGACTGGATACGTCGCAGCTCACGCTCATCCACGCCCAAGCTCTCCA
GCCAGTCCTCGTCGTCGTCTTCATCTTCCTGTGCCGGCGGAGGAGCATCT
TCGCCCGCTTCTGGACCTAGCGAGGTGGTAGTGCTCTCCTCGTTAAAACT
GTTGTCGTGCGCGTTTCCACTGTTATCGCTCTTAAGAGGCATGCTGAACT
CGATCCCCTCCTGTCGCAGAGCTTGCCGCATTCCCCGAGTCGACGGCGTG
ACC

BO11748.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:29:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG2669-PA 1707 CG2669-RA 870..1704 853..19 4175 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:27:39
Subject Length Description Subject Range Query Range Score Percent Strand
hd-RA 1927 CG2669-RA 1007..1841 853..19 4175 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:27:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5372678..5373512 19..853 4175 100 Plus
Blast to na_te.dros performed on 2015-02-11 12:27:37 has no hits.

BO11748.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:15:34 Download gff for BO11748.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2669-PA 870..1707 18..853 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:42:48 Download gff for BO11748.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2669-PA 870..1707 18..853 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 23:29:01 Download gff for BO11748.3prime
Subject Subject Range Query Range Percent Splice Strand
hd-RA 1007..1841 19..853 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:57:17 Download gff for BO11748.3prime
Subject Subject Range Query Range Percent Splice Strand
hd-RA 1007..1841 19..853 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:57:17 Download gff for BO11748.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5372678..5373512 19..853 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 23:29:01 Download gff for BO11748.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1198400..1199234 19..853 100   Plus

BO11748.5prime Sequence

854 bp (732 high quality bases) assembled on 2006-04-19

> BO11748.5prime
GAAGTTATCAGTCGACATGTCCACCGAAGCGAGTGTGGCTTCCAAATGGA
CGCGCCCAGATGACTTCATCAAACTGCAGCGGCTCAAGCAGAAGAAGAAC
AAATTGGCAGCCCGCGTGAGCAACAACAACAATAGGCGGCCAAGACACCA
AGTGGATGAGACGGATAAAAGCAAGCTACTGGAGGCTAAGCTCGCCCAGA
AGCGAAAAAATCCGTTTGCGAAATCCACAGCTGATGCCAAGAAACTGCGC
GTTGATCCGCAACTGGCGGACCTCGAACCAGTGGTCACTGCCTCCTCCTG
CTTTGTGCGGGAAACGCCCACGCGCCCGGCGCCCGCCAAATTCGTGCTCC
AGAAGTACGACCCGCAGGCCTTTGCCAAGCTCTTCCAGCATCCCCAAATC
AACGCTGAGGACGAGGACGATGCGGAGTTGGCCGCCCGGCAGAAGCACAC
CGCCCACCTACCTGTGGACTGGTCCCTGAAGACGCGAGCCCGTTTCTTCT
GTCCCACGGAACTGCCTGCCATCCAACTGAAGACCTCGCAGCTGGCCAGC
GGACTCACCAGCTTCGTGCGCTGCATGGACCCGCAGCGAACGGAGAGCAC
GCTGGATATCTCGGACGCAACGCGGTTCAACCAATGCAATTACTACTGGC
AGCACCCGCACCTGCCCTGGCTGACGCTCTACCCGCGCACCGCCAAGGAG
AACGTGGGCGTGGTGGTGGGTGAGCGGGAGCGCAAGGCCCTGGCCGAGGA
GTGGGACTTCAGCTTCCGGGGCCTATTTCAGCTGCTGCGTGCCCGCCAGT
GCCCGTACTTCTACCTGTGTGCCCACACTTTTACGGTGCTGTTCCGAGCT
GCCG

BO11748.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:29:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG2669-PA 1707 CG2669-RA 1..838 17..854 4165 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:01:39
Subject Length Description Subject Range Query Range Score Percent Strand
hd-RA 1927 CG2669-RA 136..975 15..854 4185 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:01:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5373544..5374175 854..223 3145 99.8 Minus
3R 32079331 3R 5374233..5374390 222..65 790 100 Minus
3R 32079331 3R 5374450..5374499 64..15 250 100 Minus
Blast to na_te.dros performed 2015-02-12 11:01:36
Subject Length Description Subject Range Query Range Score Percent Strand
invader2 5124 invader2 INVADER2 5124bp 639..693 78..131 119 70.9 Plus

BO11748.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:15:35 Download gff for BO11748.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2669-PA 1..838 17..854 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:42:49 Download gff for BO11748.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2669-PA 1..838 17..854 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:27:36 Download gff for BO11748.5prime
Subject Subject Range Query Range Percent Splice Strand
hd-RA 130..975 9..854 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:13:50 Download gff for BO11748.5prime
Subject Subject Range Query Range Percent Splice Strand
hd-RA 130..975 9..854 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:13:50 Download gff for BO11748.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5373544..5374175 223..854 99 <- Minus
3R 5374233..5374390 65..222 100 <- Minus
3R 5374450..5374505 9..64 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:27:36 Download gff for BO11748.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1199266..1199897 223..854 99 <- Minus
arm_3R 1199955..1200112 65..222 100 <- Minus
arm_3R 1200172..1200227 9..64 94   Minus

BO11748.complete Sequence

1738 bp assembled on 2008-01-17

GenBank Submission: FJ632178

> BO11748.complete
GAAGTTATCAGTCGACATGTCCACCGAAGCGAGTGTGGCTTCCAAATGGA
CGCGCCCAGATGACTTCATCAAACTGCAGCGGCTCAAGCAGAAGAAGAAC
AAATTGGCAGCCCGCGTGAGCAACAACAACAATAGGCGGCCAAGACACCA
AGTGGATGAGACGGATAAAAGCAAGCTACTGGAGGCTAAGCTCGCCCAGA
AGCGAAAAAATCCGTTTGCGAAATCCACAGCTGATGCCAAGAAACTGCGC
GTTGATCCGCAACTGGCGGACCTCGAACCAGTGGTCACTGCCTCCTCCTG
CTTTGTGCGGGAAACGCCCACGCGCCCGGCGCCCGCCAAATTCGTGCTCC
AGAAGTACGACCCGCAGGCCTTTGCCAAGCTCTTCCAGCATCCCCAAATC
AACGCTGAGGACGAGGACGATGCGGAGTTGGCCGCCCGGCAGAAGCACAC
CGCCCACCTACCTGTGGACTGGTCCCTGAAGACGCGAGCCCGTTTCTTCT
GTCCCACGGAACTGCCTGCCATCCAACTGAAGACCTCGCAGCTGGCCAGC
GGACTCACCAGCTTCGTGCGCTGCATGGACCCGCAGCGAACGGAGAGCAC
GCTGGATATCTCGGACGCAACGCGGTTCAACCAATGCAATTACTACTGGC
AGCACCCGCACCTGCCCTGGCTGACGCTCTACCCGCGCACCGCCAAGGAG
AACGTGGGCGTGGTGGTGGGTGAGCGGGAGCGCAAGGCCCTGGCCGAGGA
GTGGGACTTCAGCTTCCGGGGCCTATTTCAGCTGCTGCGTGCCCGCCAGT
GCCCGTACTTCTACCTGTGTGCCAACACTTTTACGGTGCTGTTCCGAGCT
GCCGGAGTTGGCGGTCGGCCGGAGAGCCACGCCTTGGTCACGCCGTCGAC
TCGGGGAATGCGGCAAGCTCTGCGACAGGAGGGGATCGAGTTCAGCATGC
CTCTTAAGAGCGATAACAGTGGAAACGCGCACGACAACAGTTTTAACGAG
GAGAGCACTACCACCTCGCTAGGTCCAGAAGCGGGCGAAGATGCTCCTCC
GCCGGCACAGGAAGATGAAGACGACGACGAGGACTGGCTGGAGAGCTTGG
GCGTGGATGAGCGTGAGCTGCGACGTATCCAGTCCTCCCATGCCAGGAAG
CAACAAGCTGCCGAAATGCGAGAGGACTTTAGCGACAACTCCTTGCTGCT
GGTCGATGGCGTGGAGTGCCAGGGATTCTTTAGCTATCTGCTAAATGCCA
AGAGTGCCATCAGCACAGTGGGCCGTCTGGCCGGAGTGCCTCCCACTCTG
CTGTCGCCAGTGGCCTTCCCCAAGGCCACCATGCAGCACTTGGTTCCGCG
GTCCAAGAAAGTGCGTCTGGATGGCGTCGACTACTTTAGCATAGACATTA
AGGGCCTAATCCTACCTACATTCCTGCCCAGTGTGGCGGAGCTGCTGTCC
GAGACGCGCCAGATGTTTAGCTCCACGCTGGCCAGCAGCATCAATACGCT
GGCCTTTAGCAAGGCCACCCAAAAGCTGCTTGAAACTCCGGAGACGCCAC
AGTCAGATGCGGAAGGAGAAGATGCCGCCGGGCAGGTCTTTGGCGAGCAG
AATCTTTCGGAGTGTGGTCTGCTGCCGGCAGTAGTTGGCTCCATCTGCCG
CACGGGCCAACATGCCGTAGGTCTTTTAGAGCGCGTTTGCTATCAAAGAG
ATGAGGGATATGCTTGGAGCGCAAGCTTTCTAGACCAT

BO11748.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:28:59
Subject Length Description Subject Range Query Range Score Percent Strand
hd-RA 1707 CG2669-PA 1..1704 17..1720 8520 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:29:01
Subject Length Description Subject Range Query Range Score Percent Strand
hd-RA 1927 CG2669-RA 136..1841 15..1720 8530 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:28:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5372678..5374175 1720..223 7490 100 Minus
3R 32079331 3R 5374233..5374390 222..65 790 100 Minus
3R 32079331 3R 5374450..5374499 64..15 250 100 Minus
Blast to na_te.dros performed 2014-11-27 14:28:58
Subject Length Description Subject Range Query Range Score Percent Strand
invader2 5124 invader2 INVADER2 5124bp 639..693 78..131 119 70.9 Plus

BO11748.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:59:01 Download gff for BO11748.complete
Subject Subject Range Query Range Percent Splice Strand
hd-RA 1..1707 17..1721 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:36:11 Download gff for BO11748.complete
Subject Subject Range Query Range Percent Splice Strand
hd-RA 135..1838 17..1722 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:44:19 Download gff for BO11748.complete
Subject Subject Range Query Range Percent Splice Strand
hd-RA 138..1841 17..1722 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:59:01 Download gff for BO11748.complete
Subject Subject Range Query Range Percent Splice Strand
hd-RA 127..1838 9..1720 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:12:37 Download gff for BO11748.complete
Subject Subject Range Query Range Percent Splice Strand
hd-RA 138..1841 17..1722 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:12:37 Download gff for BO11748.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5372676..5374175 223..1722 99 <- Minus
3R 5374233..5374390 65..222 100 <- Minus
3R 5374450..5374497 17..64 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:44:19 Download gff for BO11748.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1198398..1199897 223..1722 99 <- Minus
arm_3R 1199955..1200112 65..222 100 <- Minus
arm_3R 1200172..1200219 17..64 100   Minus

BO11748.pep Sequence

Translation from 16 to 1738

> BO11748.pep
MSTEASVASKWTRPDDFIKLQRLKQKKNKLAARVSNNNNRRPRHQVDETD
KSKLLEAKLAQKRKNPFAKSTADAKKLRVDPQLADLEPVVTASSCFVRET
PTRPAPAKFVLQKYDPQAFAKLFQHPQINAEDEDDAELAARQKHTAHLPV
DWSLKTRARFFCPTELPAIQLKTSQLASGLTSFVRCMDPQRTESTLDISD
ATRFNQCNYYWQHPHLPWLTLYPRTAKENVGVVVGERERKALAEEWDFSF
RGLFQLLRARQCPYFYLCANTFTVLFRAAGVGGRPESHALVTPSTRGMRQ
ALRQEGIEFSMPLKSDNSGNAHDNSFNEESTTTSLGPEAGEDAPPPAQED
EDDDEDWLESLGVDERELRRIQSSHARKQQAAEMREDFSDNSLLLVDGVE
CQGFFSYLLNAKSAISTVGRLAGVPPTLLSPVAFPKATMQHLVPRSKKVR
LDGVDYFSIDIKGLILPTFLPSVAELLSETRQMFSSTLASSINTLAFSKA
TQKLLETPETPQSDAEGEDAAGQVFGEQNLSECGLLPAVVGSICRTGQHA
VGLLERVCYQRDEGYAWSASFLDH

BO11748.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:39:05
Subject Length Description Subject Range Query Range Score Percent Strand
hd-PA 568 CG2669-PA 1..568 1..568 2949 100 Plus