Clone Sequence Records
BO11751.3prime Sequence
829 bp (738 high quality bases) assembled on 2006-04-19
> BO11751.3prime
ATGGTCTAGAAAGCTTGCATCTAAGTTGTTTGGGCTTTGCATGCTCATTT
CGGAAAGACGGAAACTGGTCTCCGCTTTAATGTCATCCAGGTCGAAGAAC
TCCTCATCGCTCTCCTCCTGCTTTTTCTTCTCTTCCACCTGGCTTTTCTT
AACCACTGGCAGTTTCTTGTTGGGAAAATTTAGGTTGGACCAAGAGCCGG
GCTCCAGCTTGGGCAGTTTAATCTCCACTTTGGTGCCATACATATGCGCG
CTTGCATTGCTCACATTCACAATTCCGCGCAATTCCAGGTCCAGGTCAAA
CCTGGCGTTGTCCTGCTCGGGAAATACCAGGTTGACGTGCAGCCTGATGG
GGTTCAGCTCTATCACGCTCTGACTGTAATCGTATTTTTTAGCATAAATG
GCCATCACCACATTGGTGGCCGTCTGGTGCCAGTCGTAGCGACATTGCAC
AACCTTTTTGTCGTCGTTCTCCTTGACCCATTTGTGCTCACCGTAGGTAC
AGCCCTTTTGCGCCATAAACTGGGAAAAGTCCGAGGTTCGTTTCTGGCAG
CAGGACCAGAATTTCATGCCCTCGTGAAAGATTGGCACGCCCGGATGGTA
GGTGCACTCGCCAAAGTCGCTGCTGTTACCCGTAAAGGAGTAGGTGCAGC
CGTTATTCTTGCAAGTGGTTCCCACCTCAATGGCGTCGCTGGACTTTTGA
GCAGCCGGCGTTTTGACTGCAAAAACCATGTCTTTTCAGGGCAGGAGCCA
CGGTGGGCTGTATAACGGTTAGCGGCGAATCAATGGGCGGACGCGGCAGG
GCTTCCCGGATGGGTGCCCGCACCTCAAT
BO11751.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:29:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6198-PA | 1065 | CHORD-RA | 346..1062 | 735..19 | 3585 | 100 | Minus |
CG6198-PA | 1065 | CHORD-RA | 253..348 | 829..734 | 480 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:20:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CHORD-RA | 1241 | CG6198-RA | 374..1183 | 829..19 | 4030 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:20:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24186791..24187150 | 829..469 | 1755 | 99.7 | Minus |
3R | 32079331 | 3R | 24187473..24187727 | 273..19 | 1275 | 100 | Minus |
3R | 32079331 | 3R | 24187218..24187414 | 470..274 | 985 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:20:03 has no hits.
BO11751.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:15:40 Download gff for
BO11751.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHORD-PA | 253..1065 | 15..829 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:42:56 Download gff for
BO11751.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6198-PA | 253..1065 | 15..829 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 20:37:19 Download gff for
BO11751.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHORD-RA | 374..1186 | 15..829 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:10:55 Download gff for
BO11751.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHORD-RA | 374..1186 | 15..829 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:10:55 Download gff for
BO11751.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24186791..24187150 | 469..829 | 99 | -> | Minus |
3R | 24187220..24187414 | 274..468 | 100 | -> | Minus |
3R | 24187473..24187729 | 14..273 | 98 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 20:37:19 Download gff for
BO11751.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20012513..20012872 | 469..829 | 99 | -> | Minus |
arm_3R | 20012942..20013136 | 274..468 | 100 | -> | Minus |
arm_3R | 20013195..20013451 | 14..273 | 98 | -> | Minus |
BO11751.5prime Sequence
826 bp (739 high quality bases) assembled on 2006-04-19
> BO11751.5prime
GAAGTTATCAGTCGACATGGAACAATGCTATAACAGAGGCTGTGGCCAAC
TCTTCGATCCGCAGACCAACAATGATGAATCTTGTCGGCACCATCCGGGT
GAACCTTTCTTCCACGACGCCTATAAGGGTTGGTCCTGCTGCAACAAGAA
GTCGGTCGACTTCACCGAGTTCCTCAACATCAAGGGCTGCACCTTGGCAA
AGCACTCGAATGTGAAGCCACCAGAGCCGGAGAAACCTGTTAAAGATGAG
TCCGACAAGGATGAGGTAATTGAGGTGCGGGCACCCATCCGGGAAGCCCT
GCCGCGTCCGCCCATTGATTCGCCGCTAACCGTTATACAGCCCACCGTGG
CTCCTGCCCTGAAAGACATGGTTTTTGCAGTCAAAACGCCGGCTGCTCAA
AAGTCCAGCGACGCCATTGAGGTGGGAACCACTTGCAAGAATAACGGCTG
CACCTACTCCTTTACGGGTAACAGCAGCGACTTTGGCGAGTGCACCTACC
ATCCGGGCGTGCCAATCTTTCACGAGGGCATGAAATTCTGGTCCTGCTGC
CAGAAACGAACCTCGGACTTTTCCCAGTTTATGGCGCAAAAGGGCTGTAC
CTACGGTGAGCACAAATGGGTCAAGGAGAACGACGACAAAAAGGTTGTGC
AATGTCGCTACGACTGGCACCAGACGGCCACCAATGTGGTGATGGCCATT
TATGCTAAAAAATACGATTACAGTCAGAGCGTGATAGAGCTGAACCCCAT
CAGGCTGCACGTCAACCTGGTATTTCCCGAGCAGGACAACGCCAGGTTTG
ACCTGGACCTGGAATTGCGCGGAATT
BO11751.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:29:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6198-PA | 1065 | CHORD-RA | 1..810 | 17..826 | 4050 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:49:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CHORD-RA | 1241 | CG6198-RA | 121..931 | 16..826 | 4055 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:49:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24186599..24187150 | 77..628 | 2760 | 100 | Plus |
3R | 32079331 | 3R | 24187218..24187414 | 627..823 | 985 | 100 | Plus |
3R | 32079331 | 3R | 24186479..24186540 | 16..77 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 09:49:11 has no hits.
BO11751.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:15:41 Download gff for
BO11751.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHORD-PA | 1..810 | 17..826 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:42:58 Download gff for
BO11751.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6198-PA | 1..810 | 17..826 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:46:25 Download gff for
BO11751.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHORD-RA | 121..931 | 16..826 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:14:44 Download gff for
BO11751.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHORD-RA | 121..931 | 16..826 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:14:44 Download gff for
BO11751.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24186600..24187150 | 78..628 | 100 | -> | Plus |
3R | 24187220..24187416 | 629..826 | 98 | | Plus |
3R | 24186479..24186540 | 16..77 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:46:25 Download gff for
BO11751.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20012201..20012262 | 16..77 | 100 | -> | Plus |
arm_3R | 20012322..20012872 | 78..628 | 100 | -> | Plus |
arm_3R | 20012942..20013138 | 629..826 | 98 | | Plus |
BO11751.complete Sequence
1096 bp assembled on 2006-10-11
GenBank Submission: FJ632179
> BO11751.complete
GAAGTTATCAGTCGACATGGAACAATGCTATAACAGAGGCTGTGGCCAAC
TCTTCGATCCGCAGACCAACAATGATGAATCTTGTCGGCACCATCCGGGT
GAACCTTTCTTCCACGACGCCTATAAGGGTTGGTCCTGCTGCAACAAGAA
GTCGGTCGACTTCACCGAGTTCCTCAACATCAAGGGCTGCACCTTGGCAA
AGCACTCGAATGTGAAGCCACCAGAGCCGGAGAAACCTGTTAAAGATGAG
TCCGACAAGGATGAGGTAATTGAGGTGCGGGCACCCATCCGGGAAGCCCT
GCCGCGTCCGCCCATTGATTCGCCGCTAACCGTTATACAGCCCACCGTGG
CTCCTGCCCTGAAAGACATGGTTTTTGCAGTCAAAACGCCGGCTGCTCAA
AAGTCCAGCGACGCCATTGAGGTGGGAACCACTTGCAAGAATAACGGCTG
CACCTACTCCTTTACGGGTAACAGCAGCGACTTTGGCGAGTGCACCTACC
ATCCGGGCGTGCCAATCTTTCACGAGGGCATGAAATTCTGGTCCTGCTGC
CAGAAACGAACCTCGGACTTTTCCCAGTTTATGGCGCAAAAGGGCTGTAC
CTACGGTGAGCACAAATGGGTCAAGGAGAACGACGACAAAAAGGTTGTGC
AATGTCGCTACGACTGGCACCAGACGGCCACCAATGTGGTGATGGCCATT
TATGCTAAAAAATACGATTACAGTCAGAGCGTGATAGAGCTGAACCCCAT
CAGGCTGCACGTCAACCTGGTATTTCCCGAGCAGGACAACGCCAGGTTTG
ACCTGGACCTGGAATTGCGCGGAATTGTGAATGTGAGCAATGCAAGCGCG
CATATGTATGGCACCAAAGTGGAGATTAAACTGCCCAAGCTGGAGCCCGG
CTCTTGGTCCAACCTAAATTTTCCCAACAAGAAACTGCCAGTGGTTAAGA
AAAGCCAGGTGGAAGAGAAGAAAAAGCAGGAGGAGAGCGATGAGGAGTTC
TTCGACCTGGATGACATTAAAGCGGAGACCAGTTTCCGTCTTTCCGAAAT
GAGCATGCAAAGCCCAAACAACTTAGATGCAAGCTTTCTAGACCAT
BO11751.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:06:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CHORD-RA | 1065 | CG6198-PA | 1..1062 | 17..1078 | 5310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:06:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CHORD-RA | 1241 | CG6198-RA | 121..1183 | 16..1078 | 5315 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:06:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24186599..24187150 | 77..628 | 2760 | 100 | Plus |
3R | 32079331 | 3R | 24187473..24187727 | 824..1078 | 1275 | 100 | Plus |
3R | 32079331 | 3R | 24187218..24187414 | 627..823 | 985 | 100 | Plus |
3R | 32079331 | 3R | 24186479..24186540 | 16..77 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 11:06:11 has no hits.
BO11751.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:54 Download gff for
BO11751.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHORD-RA | 1..1065 | 17..1082 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:58:22 Download gff for
BO11751.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHORD-RA | 115..1180 | 16..1082 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:44:41 Download gff for
BO11751.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHORD-RA | 122..1183 | 17..1080 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:54 Download gff for
BO11751.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHORD-RA | 115..1180 | 16..1082 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:38:49 Download gff for
BO11751.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHORD-RA | 122..1183 | 17..1080 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:38:49 Download gff for
BO11751.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24186480..24186540 | 17..77 | 100 | -> | Plus |
3R | 24186600..24187150 | 78..628 | 100 | -> | Plus |
3R | 24187220..24187414 | 629..823 | 100 | -> | Plus |
3R | 24187473..24187727 | 824..1080 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:44:41 Download gff for
BO11751.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20012202..20012262 | 17..77 | 100 | -> | Plus |
arm_3R | 20012322..20012872 | 78..628 | 100 | -> | Plus |
arm_3R | 20012942..20013136 | 629..823 | 100 | -> | Plus |
arm_3R | 20013195..20013449 | 824..1080 | 99 | | Plus |
BO11751.pep Sequence
Translation from 16 to 1096
> BO11751.pep
MEQCYNRGCGQLFDPQTNNDESCRHHPGEPFFHDAYKGWSCCNKKSVDFT
EFLNIKGCTLAKHSNVKPPEPEKPVKDESDKDEVIEVRAPIREALPRPPI
DSPLTVIQPTVAPALKDMVFAVKTPAAQKSSDAIEVGTTCKNNGCTYSFT
GNSSDFGECTYHPGVPIFHEGMKFWSCCQKRTSDFSQFMAQKGCTYGEHK
WVKENDDKKVVQCRYDWHQTATNVVMAIYAKKYDYSQSVIELNPIRLHVN
LVFPEQDNARFDLDLELRGIVNVSNASAHMYGTKVEIKLPKLEPGSWSNL
NFPNKKLPVVKKSQVEEKKKQEESDEEFFDLDDIKAETSFRLSEMSMQSP
NNLDASFLDH
BO11751.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:13:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CHORD-PA | 354 | CG6198-PA | 1..354 | 1..354 | 1928 | 100 | Plus |