Clone BO11751 Report

Search the DGRC for BO11751

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:117
Well:51
Vector:pDNR-Dual
Associated Gene/TranscriptCHORD-RA
Protein status:BO11751.pep: validated full length
Sequenced Size:1096

Clone Sequence Records

BO11751.3prime Sequence

829 bp (738 high quality bases) assembled on 2006-04-19

> BO11751.3prime
ATGGTCTAGAAAGCTTGCATCTAAGTTGTTTGGGCTTTGCATGCTCATTT
CGGAAAGACGGAAACTGGTCTCCGCTTTAATGTCATCCAGGTCGAAGAAC
TCCTCATCGCTCTCCTCCTGCTTTTTCTTCTCTTCCACCTGGCTTTTCTT
AACCACTGGCAGTTTCTTGTTGGGAAAATTTAGGTTGGACCAAGAGCCGG
GCTCCAGCTTGGGCAGTTTAATCTCCACTTTGGTGCCATACATATGCGCG
CTTGCATTGCTCACATTCACAATTCCGCGCAATTCCAGGTCCAGGTCAAA
CCTGGCGTTGTCCTGCTCGGGAAATACCAGGTTGACGTGCAGCCTGATGG
GGTTCAGCTCTATCACGCTCTGACTGTAATCGTATTTTTTAGCATAAATG
GCCATCACCACATTGGTGGCCGTCTGGTGCCAGTCGTAGCGACATTGCAC
AACCTTTTTGTCGTCGTTCTCCTTGACCCATTTGTGCTCACCGTAGGTAC
AGCCCTTTTGCGCCATAAACTGGGAAAAGTCCGAGGTTCGTTTCTGGCAG
CAGGACCAGAATTTCATGCCCTCGTGAAAGATTGGCACGCCCGGATGGTA
GGTGCACTCGCCAAAGTCGCTGCTGTTACCCGTAAAGGAGTAGGTGCAGC
CGTTATTCTTGCAAGTGGTTCCCACCTCAATGGCGTCGCTGGACTTTTGA
GCAGCCGGCGTTTTGACTGCAAAAACCATGTCTTTTCAGGGCAGGAGCCA
CGGTGGGCTGTATAACGGTTAGCGGCGAATCAATGGGCGGACGCGGCAGG
GCTTCCCGGATGGGTGCCCGCACCTCAAT

BO11751.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:29:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG6198-PA 1065 CHORD-RA 346..1062 735..19 3585 100 Minus
CG6198-PA 1065 CHORD-RA 253..348 829..734 480 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:20:04
Subject Length Description Subject Range Query Range Score Percent Strand
CHORD-RA 1241 CG6198-RA 374..1183 829..19 4030 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:20:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24186791..24187150 829..469 1755 99.7 Minus
3R 32079331 3R 24187473..24187727 273..19 1275 100 Minus
3R 32079331 3R 24187218..24187414 470..274 985 100 Minus
Blast to na_te.dros performed on 2015-02-10 20:20:03 has no hits.

BO11751.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:15:40 Download gff for BO11751.3prime
Subject Subject Range Query Range Percent Splice Strand
CHORD-PA 253..1065 15..829 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:42:56 Download gff for BO11751.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6198-PA 253..1065 15..829 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 20:37:19 Download gff for BO11751.3prime
Subject Subject Range Query Range Percent Splice Strand
CHORD-RA 374..1186 15..829 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:10:55 Download gff for BO11751.3prime
Subject Subject Range Query Range Percent Splice Strand
CHORD-RA 374..1186 15..829 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:10:55 Download gff for BO11751.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 24186791..24187150 469..829 99 -> Minus
3R 24187220..24187414 274..468 100 -> Minus
3R 24187473..24187729 14..273 98 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 20:37:19 Download gff for BO11751.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20012513..20012872 469..829 99 -> Minus
arm_3R 20012942..20013136 274..468 100 -> Minus
arm_3R 20013195..20013451 14..273 98 -> Minus

BO11751.5prime Sequence

826 bp (739 high quality bases) assembled on 2006-04-19

> BO11751.5prime
GAAGTTATCAGTCGACATGGAACAATGCTATAACAGAGGCTGTGGCCAAC
TCTTCGATCCGCAGACCAACAATGATGAATCTTGTCGGCACCATCCGGGT
GAACCTTTCTTCCACGACGCCTATAAGGGTTGGTCCTGCTGCAACAAGAA
GTCGGTCGACTTCACCGAGTTCCTCAACATCAAGGGCTGCACCTTGGCAA
AGCACTCGAATGTGAAGCCACCAGAGCCGGAGAAACCTGTTAAAGATGAG
TCCGACAAGGATGAGGTAATTGAGGTGCGGGCACCCATCCGGGAAGCCCT
GCCGCGTCCGCCCATTGATTCGCCGCTAACCGTTATACAGCCCACCGTGG
CTCCTGCCCTGAAAGACATGGTTTTTGCAGTCAAAACGCCGGCTGCTCAA
AAGTCCAGCGACGCCATTGAGGTGGGAACCACTTGCAAGAATAACGGCTG
CACCTACTCCTTTACGGGTAACAGCAGCGACTTTGGCGAGTGCACCTACC
ATCCGGGCGTGCCAATCTTTCACGAGGGCATGAAATTCTGGTCCTGCTGC
CAGAAACGAACCTCGGACTTTTCCCAGTTTATGGCGCAAAAGGGCTGTAC
CTACGGTGAGCACAAATGGGTCAAGGAGAACGACGACAAAAAGGTTGTGC
AATGTCGCTACGACTGGCACCAGACGGCCACCAATGTGGTGATGGCCATT
TATGCTAAAAAATACGATTACAGTCAGAGCGTGATAGAGCTGAACCCCAT
CAGGCTGCACGTCAACCTGGTATTTCCCGAGCAGGACAACGCCAGGTTTG
ACCTGGACCTGGAATTGCGCGGAATT

BO11751.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:29:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG6198-PA 1065 CHORD-RA 1..810 17..826 4050 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:49:12
Subject Length Description Subject Range Query Range Score Percent Strand
CHORD-RA 1241 CG6198-RA 121..931 16..826 4055 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:49:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24186599..24187150 77..628 2760 100 Plus
3R 32079331 3R 24187218..24187414 627..823 985 100 Plus
3R 32079331 3R 24186479..24186540 16..77 310 100 Plus
Blast to na_te.dros performed on 2015-02-13 09:49:11 has no hits.

BO11751.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:15:41 Download gff for BO11751.5prime
Subject Subject Range Query Range Percent Splice Strand
CHORD-PA 1..810 17..826 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:42:58 Download gff for BO11751.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6198-PA 1..810 17..826 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:46:25 Download gff for BO11751.5prime
Subject Subject Range Query Range Percent Splice Strand
CHORD-RA 121..931 16..826 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:14:44 Download gff for BO11751.5prime
Subject Subject Range Query Range Percent Splice Strand
CHORD-RA 121..931 16..826 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:14:44 Download gff for BO11751.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 24186600..24187150 78..628 100 -> Plus
3R 24187220..24187416 629..826 98   Plus
3R 24186479..24186540 16..77 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:46:25 Download gff for BO11751.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20012201..20012262 16..77 100 -> Plus
arm_3R 20012322..20012872 78..628 100 -> Plus
arm_3R 20012942..20013138 629..826 98   Plus

BO11751.complete Sequence

1096 bp assembled on 2006-10-11

GenBank Submission: FJ632179

> BO11751.complete
GAAGTTATCAGTCGACATGGAACAATGCTATAACAGAGGCTGTGGCCAAC
TCTTCGATCCGCAGACCAACAATGATGAATCTTGTCGGCACCATCCGGGT
GAACCTTTCTTCCACGACGCCTATAAGGGTTGGTCCTGCTGCAACAAGAA
GTCGGTCGACTTCACCGAGTTCCTCAACATCAAGGGCTGCACCTTGGCAA
AGCACTCGAATGTGAAGCCACCAGAGCCGGAGAAACCTGTTAAAGATGAG
TCCGACAAGGATGAGGTAATTGAGGTGCGGGCACCCATCCGGGAAGCCCT
GCCGCGTCCGCCCATTGATTCGCCGCTAACCGTTATACAGCCCACCGTGG
CTCCTGCCCTGAAAGACATGGTTTTTGCAGTCAAAACGCCGGCTGCTCAA
AAGTCCAGCGACGCCATTGAGGTGGGAACCACTTGCAAGAATAACGGCTG
CACCTACTCCTTTACGGGTAACAGCAGCGACTTTGGCGAGTGCACCTACC
ATCCGGGCGTGCCAATCTTTCACGAGGGCATGAAATTCTGGTCCTGCTGC
CAGAAACGAACCTCGGACTTTTCCCAGTTTATGGCGCAAAAGGGCTGTAC
CTACGGTGAGCACAAATGGGTCAAGGAGAACGACGACAAAAAGGTTGTGC
AATGTCGCTACGACTGGCACCAGACGGCCACCAATGTGGTGATGGCCATT
TATGCTAAAAAATACGATTACAGTCAGAGCGTGATAGAGCTGAACCCCAT
CAGGCTGCACGTCAACCTGGTATTTCCCGAGCAGGACAACGCCAGGTTTG
ACCTGGACCTGGAATTGCGCGGAATTGTGAATGTGAGCAATGCAAGCGCG
CATATGTATGGCACCAAAGTGGAGATTAAACTGCCCAAGCTGGAGCCCGG
CTCTTGGTCCAACCTAAATTTTCCCAACAAGAAACTGCCAGTGGTTAAGA
AAAGCCAGGTGGAAGAGAAGAAAAAGCAGGAGGAGAGCGATGAGGAGTTC
TTCGACCTGGATGACATTAAAGCGGAGACCAGTTTCCGTCTTTCCGAAAT
GAGCATGCAAAGCCCAAACAACTTAGATGCAAGCTTTCTAGACCAT

BO11751.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:06:13
Subject Length Description Subject Range Query Range Score Percent Strand
CHORD-RA 1065 CG6198-PA 1..1062 17..1078 5310 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:06:14
Subject Length Description Subject Range Query Range Score Percent Strand
CHORD-RA 1241 CG6198-RA 121..1183 16..1078 5315 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:06:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24186599..24187150 77..628 2760 100 Plus
3R 32079331 3R 24187473..24187727 824..1078 1275 100 Plus
3R 32079331 3R 24187218..24187414 627..823 985 100 Plus
3R 32079331 3R 24186479..24186540 16..77 310 100 Plus
Blast to na_te.dros performed on 2014-11-27 11:06:11 has no hits.

BO11751.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:54 Download gff for BO11751.complete
Subject Subject Range Query Range Percent Splice Strand
CHORD-RA 1..1065 17..1082 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:58:22 Download gff for BO11751.complete
Subject Subject Range Query Range Percent Splice Strand
CHORD-RA 115..1180 16..1082 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:44:41 Download gff for BO11751.complete
Subject Subject Range Query Range Percent Splice Strand
CHORD-RA 122..1183 17..1080 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:54 Download gff for BO11751.complete
Subject Subject Range Query Range Percent Splice Strand
CHORD-RA 115..1180 16..1082 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:38:49 Download gff for BO11751.complete
Subject Subject Range Query Range Percent Splice Strand
CHORD-RA 122..1183 17..1080 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:38:49 Download gff for BO11751.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24186480..24186540 17..77 100 -> Plus
3R 24186600..24187150 78..628 100 -> Plus
3R 24187220..24187414 629..823 100 -> Plus
3R 24187473..24187727 824..1080 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:44:41 Download gff for BO11751.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20012202..20012262 17..77 100 -> Plus
arm_3R 20012322..20012872 78..628 100 -> Plus
arm_3R 20012942..20013136 629..823 100 -> Plus
arm_3R 20013195..20013449 824..1080 99   Plus

BO11751.pep Sequence

Translation from 16 to 1096

> BO11751.pep
MEQCYNRGCGQLFDPQTNNDESCRHHPGEPFFHDAYKGWSCCNKKSVDFT
EFLNIKGCTLAKHSNVKPPEPEKPVKDESDKDEVIEVRAPIREALPRPPI
DSPLTVIQPTVAPALKDMVFAVKTPAAQKSSDAIEVGTTCKNNGCTYSFT
GNSSDFGECTYHPGVPIFHEGMKFWSCCQKRTSDFSQFMAQKGCTYGEHK
WVKENDDKKVVQCRYDWHQTATNVVMAIYAKKYDYSQSVIELNPIRLHVN
LVFPEQDNARFDLDLELRGIVNVSNASAHMYGTKVEIKLPKLEPGSWSNL
NFPNKKLPVVKKSQVEEKKKQEESDEEFFDLDDIKAETSFRLSEMSMQSP
NNLDASFLDH

BO11751.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:13:08
Subject Length Description Subject Range Query Range Score Percent Strand
CHORD-PA 354 CG6198-PA 1..354 1..354 1928 100 Plus