Clone Sequence Records
BO11755.3prime Sequence
945 bp (853 high quality bases) assembled on 2006-04-19
> BO11755.3prime
ATGGTCTAGAAAGCTTGCTCTAACAACCCCAAGGACCATGCATTGCCTAG
ACCATGAAGAACGTACATCGAGGCGTTGCTCAGCCTGGGAGAGAAGTTCC
TTCTGCTCCGCTTGAAAATCTCGCAGCATGGTCGCCAACTTGGAGCGCTC
CTCCATCTCCGCCGCCAACCGAGCATTGTAGTCGTTCAGCAGATCCACAG
CTTCGTTCACCTGTATGGCCAGTTCCTTGGCCTTGTCCTTATCCTCCAGC
TTGCTGATGCAGCTAATCTCGGATATTTCCTGGGGCAGCTTGGCGATACG
TTCGCGCACCACAGCATCGCTGGATGCGGAGTTTTCGATGCTGGTCAGGG
CCCTGATGAGCTCCTCGGGCTCCGGTGGCTCTCCCAAAGGCAAGTAGGGT
GGCGTGTGGCCGTTCTCGGGTTCCACAGAAACTACTTCCTCCGTCGGAGG
AGCTGAGTTCGCGCTGCTGCCTTGGACGTGATGGCGCGAGCGCTTGGACT
TAGAGTGGCGATCCTCGTGCTTGCGCTTCTCGCGGCGCTCGGATTTCTCG
GGCTTGCCGCTGCCGCCGTGATCCTTCTCCTTCTCGGGCTTCTCACTATC
GCCATTGGTCTTGCCATTGCTGCTGGAGCTGCTGCCAGGAGCCTCCTTGT
GTAATCGCGACCTCCAGTCGGCAATGGTCTTGGGATCGTAGACGCCCCGC
TCCAGCCAGATGTTTAGGATCCTTCCCAGGCTGCCCAGCAACTTGTCCGA
GTTGCACTTCTCGCCAATGTGGGCGAACACCTTGCCCAGCACAAGGCTGT
ACTCCTTGCCGTACTCCGGGCCCTTCTTCTTGCTGTTCTGGATCACGTCG
TTGGCCAGGTACATGAAGGTCAGCTTCTTAGGCTCCGGCACGTTCTCCAG
CTCCCGCTGCCAGGTCTTTCAATCGCTGCACTGTGTTTTCGGGTG
BO11755.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:29:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9018-PB | 1026 | CG9018-RB | 126..1023 | 916..19 | 4490 | 100 | Minus |
CG9018-PA | 1128 | CG9018-RA | 126..976 | 916..66 | 4255 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:41:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9018-RB | 1283 | CG9018-RB | 224..1148 | 942..19 | 4585 | 99.8 | Minus |
CG9018-RA | 1395 | CG9018-RA | 224..1101 | 942..66 | 4350 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:41:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2236047..2236730 | 208..891 | 3420 | 100 | Plus |
3L | 28110227 | 3L | 2235781..2235974 | 19..212 | 970 | 100 | Plus |
3L | 28110227 | 3L | 2236801..2236853 | 891..942 | 200 | 96.2 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:41:45 has no hits.
BO11755.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:15:49 Download gff for
BO11755.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9018-PB | 97..1026 | 15..945 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:43:08 Download gff for
BO11755.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9018-PB | 97..1026 | 15..945 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 02:11:59 Download gff for
BO11755.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9018-RB | 222..1153 | 14..945 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:47:38 Download gff for
BO11755.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9018-RB | 222..1153 | 14..945 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:47:38 Download gff for
BO11755.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2235776..2235972 | 14..210 | 98 | <- | Plus |
3L | 2236050..2236729 | 211..890 | 100 | <- | Plus |
3L | 2236801..2236855 | 891..945 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 02:11:59 Download gff for
BO11755.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2235776..2235972 | 14..210 | 98 | <- | Plus |
arm_3L | 2236050..2236729 | 211..890 | 100 | <- | Plus |
arm_3L | 2236801..2236855 | 891..945 | 94 | | Plus |
BO11755.5prime Sequence
976 bp (891 high quality bases) assembled on 2006-04-19
> BO11755.5prime
GAAGTTATCAGTCGACATGTCGGCCTTCACGGATTCGGCGCTACTCAAGA
AGCTGGCCGAGCTAAACAGCAGCCAGCAGAGCATCCAGACGCTCTCCCTG
TGGCTAATTCACCACCGAAAACACAGTGCAGCGATTGTAAGGACCTGGCA
GCGGGAGCTGGAGAACGTGCCGGAGCCTAAGAAGCTGACCTTCATGTACC
TGGCCAACGACGTGATCCAGAACAGCAAGAAGAAGGGCCCGGAGTACGGC
AAGGAGTACAGCCTTGTGCTGGGCAAGGTGTTCGCCCACATTGGCGAGAA
GTGCAACTCGGACAAGTTGCTGGGCAGCCTGGGAAGGATCCTAAACATCT
GGCTGGAGCGGGGCGTCTACGATCCCAAGACCATTGCCGACTGGAGGTCG
CGATTACACAAGGAGGCTCCTGGCAGCAGCTCCAGCAGCAATGGCAAGAC
CAATGGCGATAGTGAGAAGCCCGAGAAGGAGAAGGATCACGGCGGCAGCG
GCAAGCCCGAGAAATCCGAGCGCCGCGAGAAGCGCAAGCACGAGGATCGC
CACTCTAAGTCCAAGCGCTCGCGCCATCACGTCCAAGGCAGCAGCGCGAA
CTCAGCTCCTCCGACGGAGGAAGTAGTTTCTGTGGAACCCGAGAACGGCC
ACACGCCACCCTACTTGCCTTTGGGAGAGCCACCGGAGCCCGAGGAGCTC
ATCAGGGCCCTGACCAGCATCGAAAACTCCGCATCCAGCGATGCTGTGGT
GCGCGAACGTATCGCCAAGCTGCCCCAGGAAATATCCGAGATTAGCTGCA
TCAGCAAGCTGGAGGATAAGGACAAGGCCAAGGAACTGGCCATACAGGTG
AACGAAGCTGTGGATCTGCTGAACGACTACAATGCTCGGTTGGCGGCGGA
GATGGAGGAGCGCTCCAAGTTGGCGACCATGCTGCGAGATTTTCAAGCGG
AGCAGAGGGAACTTCCTCTCCAGGCT
BO11755.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:29:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9018-PB | 1026 | CG9018-RB | 1..949 | 17..965 | 4720 | 99.8 | Plus |
CG9018-PA | 1128 | CG9018-RA | 1..949 | 17..965 | 4720 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:12:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9018-RA | 1395 | CG9018-RA | 125..1085 | 16..976 | 4745 | 99.7 | Plus |
CG9018-RB | 1283 | CG9018-RB | 125..1085 | 16..976 | 4745 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:12:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2236047..2236730 | 850..167 | 3420 | 100 | Minus |
3L | 28110227 | 3L | 2236801..2236952 | 167..16 | 760 | 100 | Minus |
3L | 28110227 | 3L | 2235855..2235974 | 965..846 | 585 | 99.2 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:12:23 has no hits.
BO11755.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:15:50 Download gff for
BO11755.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9018-PB | 1..960 | 17..976 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:43:10 Download gff for
BO11755.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9018-PA | 1..960 | 17..976 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:19:25 Download gff for
BO11755.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9018-RB | 118..1085 | 9..976 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:10:41 Download gff for
BO11755.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9018-RB | 118..1085 | 9..976 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:10:41 Download gff for
BO11755.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2235844..2235972 | 848..976 | 97 | <- | Minus |
3L | 2236050..2236729 | 168..847 | 100 | <- | Minus |
3L | 2236801..2236956 | 9..167 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:19:25 Download gff for
BO11755.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2235844..2235972 | 848..976 | 97 | <- | Minus |
arm_3L | 2236050..2236729 | 168..847 | 100 | <- | Minus |
arm_3L | 2236801..2236956 | 9..167 | 98 | | Minus |
BO11755.complete Sequence
1057 bp assembled on 2006-10-11
GenBank Submission: FJ632181
> BO11755.complete
GAAGTTATCAGTCGACATGTCGGCCTTCACGGATTCGGCGCTACTCAAGA
AGCTGGCCGAGCTAAACAGCAGCCAGCAGAGCATCCAGACGCTCTCCCTG
TGGCTAATTCACCACCGAAAACACAGTGCAGCGATTGTAAGGACCTGGCA
GCGGGAGCTGGAGAACGTGCCGGAGCCTAAGAAGCTGACCTTCATGTACC
TGGCCAACGACGTGATCCAGAACAGCAAGAAGAAGGGCCCGGAGTACGGC
AAGGAGTACAGCCTTGTGCTGGGCAAGGTGTTCGCCCACATTGGCGAGAA
GTGCAACTCGGACAAGTTGCTGGGCAGCCTGGGAAGGATCCTAAACATCT
GGCTGGAGCGGGGCGTCTACGATCCCAAGACCATTGCCGACTGGAGGTCG
CGATTACACAAGGAGGCTCCTGGCAGCAGCTCCAGCAGCAATGGCAAGAC
CAATGGCGATAGTGAGAAGCCCGAGAAGGAGAAGGATCACGGCGGCAGCG
GCAAGCCCGAGAAATCCGAGCGCCGCGAGAAGCGCAAGCACGAGGATCGC
CACTCTAAGTCCAAGCGCTCGCGCCATCACGTCCAAGGCAGCAGCGCGAA
CTCAGCTCCTCCGACGGAGGAAGTAGTTTCTGTGGAACCCGAGAACGGCC
ACACGCCACCCTACTTGCCTTTGGGAGAGCCACCGGAGCCCGAGGAGCTC
ATCAGGGCCCTGACCAGCATCGAAAACTCCGCATCCAGCGATGCTGTGGT
GCGCGAACGTATCGCCAAGCTGCCCCAGGAAATATCCGAGATTAGCTGCA
TCAGCAAGCTGGAGGATAAGGACAAGGCCAAGGAACTGGCCATACAGGTG
AACGAAGCTGTGGATCTGCTGAACGACTACAATGCTCGGTTGGCGGCGGA
GATGGAGGAGCGCTCCAAGTTGGCGACCATGCTGCGAGATTTTCAAGCGG
AGCAGAAGGAACTTCTCTCCCAGGCTGAGCAACGCCTCGATGTACGTTCT
TCATGGTCTAGGCAATGCATGGTCCTTGGGGTTGTTAGAGCAAGCTTTCT
AGACCAT
BO11755.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:35:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9018-RB | 1026 | CG9018-PB | 1..1023 | 17..1039 | 5115 | 100 | Plus |
CG9018-RA | 1128 | CG9018-PA | 1..976 | 17..992 | 4880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:35:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9018-RB | 1283 | CG9018-RB | 125..1148 | 16..1039 | 5120 | 100 | Plus |
CG9018-RA | 1395 | CG9018-RA | 125..1101 | 16..992 | 4885 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:35:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2236047..2236730 | 850..167 | 3420 | 100 | Minus |
3L | 28110227 | 3L | 2235781..2235974 | 1039..846 | 970 | 100 | Minus |
3L | 28110227 | 3L | 2236801..2236952 | 167..16 | 760 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:35:24 has no hits.
BO11755.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:49:39 Download gff for
BO11755.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9018-RB | 1..1026 | 17..1043 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:04:43 Download gff for
BO11755.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9018-RB | 114..1149 | 9..1044 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:56 Download gff for
BO11755.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9018-RB | 126..1148 | 17..1041 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:49:39 Download gff for
BO11755.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9018-RB | 114..1149 | 9..1044 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:11:36 Download gff for
BO11755.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9018-RB | 126..1148 | 17..1041 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:11:36 Download gff for
BO11755.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2235779..2235972 | 848..1041 | 98 | <- | Minus |
3L | 2236050..2236729 | 168..847 | 100 | <- | Minus |
3L | 2236801..2236951 | 17..167 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:56 Download gff for
BO11755.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2235779..2235972 | 848..1041 | 98 | <- | Minus |
arm_3L | 2236050..2236729 | 168..847 | 100 | <- | Minus |
arm_3L | 2236801..2236951 | 17..167 | 100 | | Minus |
BO11755.pep Sequence
Translation from 16 to 1057
> BO11755.pep
MSAFTDSALLKKLAELNSSQQSIQTLSLWLIHHRKHSAAIVRTWQRELEN
VPEPKKLTFMYLANDVIQNSKKKGPEYGKEYSLVLGKVFAHIGEKCNSDK
LLGSLGRILNIWLERGVYDPKTIADWRSRLHKEAPGSSSSSNGKTNGDSE
KPEKEKDHGGSGKPEKSERREKRKHEDRHSKSKRSRHHVQGSSANSAPPT
EEVVSVEPENGHTPPYLPLGEPPEPEELIRALTSIENSASSDAVVRERIA
KLPQEISEISCISKLEDKDKAKELAIQVNEAVDLLNDYNARLAAEMEERS
KLATMLRDFQAEQKELLSQAEQRLDVRSSWSRQCMVLGVVRASFLDH
BO11755.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:31:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9018-PB | 341 | CG9018-PB | 1..341 | 1..341 | 1746 | 100 | Plus |
CG9018-PA | 375 | CG9018-PA | 1..325 | 1..325 | 1663 | 100 | Plus |
CG15160-PB | 818 | CG15160-PB | 5..135 | 4..138 | 172 | 29.6 | Plus |
CG15160-PA | 822 | CG15160-PA | 5..135 | 4..138 | 172 | 29.6 | Plus |
CG15160-PC | 834 | CG15160-PC | 5..135 | 4..138 | 172 | 29.6 | Plus |