Clone Sequence Records
BO11756.3prime Sequence
536 bp (535 high quality bases) assembled on 2006-04-19
> BO11756.3prime
ATGGTCTAGAAAGCTTGCGTTCCATCCGGAGCCACCGGAGAACCAGCCGC
CGCCGGACGACCAGCCACCGTGGCTGCTGCCATCGGCGATTCCGGAGCTG
ATCAGCTTAATGATCTTCACATCTTCGGCGTGGTGTGCGTGTCCATGGCC
TCCGCTGGAGTAGTCGTAACCGTGGCCATGGCCATGGCTGTGACCCTCCT
CCTGGATGACCTTGATGATCTTAACATCCGAGCCGTGGCCGTGGCTGTGA
CCATAATCATGTCCGTGAGAGTGGCCCGCCTCGCTGATCACCTTGACGAT
CTTCACCTCCTCGGGAGCATGGGCATAGCCACCAGAGTAGCCGCCGGCCC
ATCCGCCATGACCAGCCTCCTCGCTGATGACCTTGACGATTGTGGGGGCG
CCGCCTCCGCCGGATGACCAGCCACCACCTCCTCCAGTTGACCAGCCACC
GCTAGCGCCGCCTCCGATGAATCCGGATTGGGCCAGGCTGAAGCAGGCAA
TCAGGCAGATGAAAACCTTCATGTCGACTGATAACT
BO11756.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:29:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7406-PA | 507 | CG7406-RA | 1..504 | 522..19 | 2495 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:21:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7406-RA | 812 | CG7406-RA | 87..590 | 522..19 | 2505 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:21:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19077871..19078370 | 518..19 | 2485 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:21:29 has no hits.
BO11756.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:15:51 Download gff for
BO11756.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7406-PA | 1..507 | 15..522 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:43:11 Download gff for
BO11756.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7406-PA | 1..507 | 15..522 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 20:07:58 Download gff for
BO11756.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7406-RA | 75..595 | 9..530 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:53:59 Download gff for
BO11756.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7406-RA | 80..600 | 9..530 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:53:59 Download gff for
BO11756.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19077864..19078380 | 9..526 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 20:07:58 Download gff for
BO11756.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18971897..18972413 | 9..526 | 98 | | Minus |
BO11756.5prime Sequence
536 bp (535 high quality bases) assembled on 2006-04-19
> BO11756.5prime
GAAGTTATCAGTCGACATGAAGGTTTTCATCTGCCTGATTGCCTGCTTCA
GCCTGGCCCAATCCGGATTCATCGGAGGCGGCGCTAGCGGTGGCTGGTCA
ACTGGAGGAGGTGGTGGCTGGTCATCCGGCGGAGGCGGCGCCCCCACAAT
CGTCAAGGTCATCAGCGAGGAGGCTGGTCATGGCGGATGGGCCGGCGGCT
ACTCTGGTGGCTATGCCCATGCTCCCGAGGAGGTGAAGATCGTCAAGGTG
ATCAGCGAGGCGGGCCACTCTCACGGACATGATTATGGTCACAGCCACGG
CCACGGCTCGGATGTTAAGATCATCAAGGTCATCCAGGAGGAGGGTCACA
GCCATGGCCATGGCCACGGTTACGACTACTCCAGCGGAGGCCATGGACAC
GCACACCACGCCGAAGATGTGAAGATCATTAAGCTGATCAGCTCCGGAAT
CGCCGATGGCAGCAGCCACGGTGGCTGGTCGTCCGGCGGCGGCTGGTTCT
CCGGTGGCTCCGGATGGAACGCAAGCTTTCTAGACC
BO11756.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:29:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7406-PA | 507 | CG7406-RA | 1..504 | 17..520 | 2495 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:40:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7406-RA | 812 | CG7406-RA | 87..590 | 17..520 | 2505 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:40:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19077871..19078370 | 21..520 | 2485 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:40:39 has no hits.
BO11756.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:15:52 Download gff for
BO11756.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7406-PA | 1..507 | 17..524 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:43:13 Download gff for
BO11756.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7406-PA | 1..507 | 17..524 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 18:33:41 Download gff for
BO11756.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7406-RA | 75..595 | 9..530 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:48:29 Download gff for
BO11756.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7406-RA | 80..600 | 9..530 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:48:29 Download gff for
BO11756.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19077864..19078380 | 13..530 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 18:33:41 Download gff for
BO11756.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18971897..18972413 | 13..530 | 98 | | Plus |
BO11756.complete Sequence
538 bp assembled on 2006-10-11
GenBank Submission: FJ632182
> BO11756.complete
GAAGTTATCAGTCGACATGAAGGTTTTCATCTGCCTGATTGCCTGCTTCA
GCCTGGCCCAATCCGGATTCATCGGAGGCGGCGCTAGCGGTGGCTGGTCA
ACTGGAGGAGGTGGTGGCTGGTCATCCGGCGGAGGCGGCGCCCCCACAAT
CGTCAAGGTCATCAGCGAGGAGGCTGGTCATGGCGGATGGGCCGGCGGCT
ACTCTGGTGGCTATGCCCATGCTCCCGAGGAGGTGAAGATCGTCAAGGTG
ATCAGCGAGGCGGGCCACTCTCACGGACATGATTATGGTCACAGCCACGG
CCACGGCTCGGATGTTAAGATCATCAAGGTCATCCAGGAGGAGGGTCACA
GCCATGGCCATGGCCACGGTTACGACTACTCCAGCGGAGGCCATGGACAC
GCACACCACGCCGAAGATGTGAAGATCATTAAGCTGATCAGCTCCGGAAT
CGCCGATGGCAGCAGCCACGGTGGCTGGTCGTCCGGCGGCGGCTGGTTCT
CCGGTGGCTCCGGATGGAACGCAAGCTTTCTAGACCAT
BO11756.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:27:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7406-RA | 507 | CG7406-PA | 1..504 | 17..520 | 2505 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:27:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7406-RA | 812 | CG7406-RA | 87..590 | 17..520 | 2505 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:27:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19077871..19078370 | 21..520 | 2485 | 99.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:27:04 has no hits.
BO11756.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:49:40 Download gff for
BO11756.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7406-RA | 1..507 | 17..524 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:04:44 Download gff for
BO11756.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7406-RA | 75..595 | 9..530 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:09 Download gff for
BO11756.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7406-RA | 82..585 | 17..522 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:49:40 Download gff for
BO11756.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7406-RA | 75..595 | 9..530 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:18:46 Download gff for
BO11756.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7406-RA | 87..590 | 17..522 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:18:46 Download gff for
BO11756.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19077867..19078370 | 17..522 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:09 Download gff for
BO11756.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18971900..18972403 | 17..522 | 98 | | Plus |
BO11756.pep Sequence
Translation from 16 to 538
> BO11756.pep
MKVFICLIACFSLAQSGFIGGGASGGWSTGGGGGWSSGGGGAPTIVKVIS
EEAGHGGWAGGYSGGYAHAPEEVKIVKVISEAGHSHGHDYGHSHGHGSDV
KIIKVIQEEGHSHGHGHGYDYSSGGHGHAHHAEDVKIIKLISSGIADGSS
HGGWSSGGGWFSGGSGWNASFLDH
BO11756.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:31:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7406-PA | 168 | CG7406-PA | 1..168 | 1..168 | 942 | 100 | Plus |
| CG15731-PA | 319 | CG15731-PA | 1..200 | 1..164 | 321 | 40.5 | Plus |
| CG14191-PA | 193 | CG14191-PA | 1..188 | 1..160 | 273 | 39.2 | Plus |
| CG12523-PB | 250 | CG12523-PB | 1..195 | 1..169 | 265 | 38.9 | Plus |
| CG12523-PA | 250 | CG12523-PA | 1..195 | 1..169 | 265 | 38.9 | Plus |
| CG15731-PA | 319 | CG15731-PA | 81..264 | 20..160 | 262 | 41.2 | Plus |
| CG15731-PA | 319 | CG15731-PA | 185..284 | 22..116 | 246 | 57.8 | Plus |
| CG15731-PA | 319 | CG15731-PA | 149..283 | 15..130 | 237 | 43.5 | Plus |
