Clone Sequence Records
BO11757.3prime Sequence
830 bp (794 high quality bases) assembled on 2006-04-19
> BO11757.3prime
ATGGTCTAGAAAGCTTGCGTAGTAGCATTTGTTGTTGCCACTGAGCTTGC
TGCGAATCCAGTCGAGGTAGTAGTACACATTGGCCTGCACATCGGGCAGT
CCGACACCGCATGGTCGTCCCCAATTGACCACACCCACCAATTGGCCATT
GCTCACCAGCGGACCACCGGAATCGCCGTGACAGGCGCCCTCACCCTCGC
GCGAAAAGGTGCAGATGTGACCCACACCCATGCTGCTGGTTCGGTTGAAG
GTCTCATAGCACTCATCCAGAGGAACAAGGCCCACGGTCAGCTTGTGCAG
GTCCTCCATGGAACTCCCGTAGGCCACATCGGAGCCCCAGCCCGTGAGGA
CGATCTCTTCGCCGAGTTGAACCGGTCTAGTTGGCAAAGCGATCGGCTGT
GTCAGCTCATTGAAGGTGATGTTCTCGGTAAGCTTCACCAGGGCGATGTC
GTTATGCATGTAAGGCTGGTCGTACATACAGTGTTTGTGGATCTCGGCGG
TGTAGTAGATCGCTCCGGGCTCTGCCCACTTATTGGTGCCCGTGATCACA
TTGACCAGGGCGGGAATGAAATTTTCCACGCAGTGTCCAGCAGTTATGAT
CCAGTTTTCGTTTAGGATGGCACCACCGCAATTATGGGAGCCCACTATGG
GTTGCAGGGACACCTGGTATGGAGCAAATCCGATCTCAGCCTCCTCGCCA
CCCTTTATCCTGCCAGATTGACCCGCAGGAAAGGGGCCAACTATGCGCTT
TGATTCACAGGGATTTGGGGGCTTCACCGCTAGGAGAATTAAAAGGCTTA
GACGGAGCAGCTTCATGTCGACTGATAACT
BO11757.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:29:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31265-PA | 801 | CG31265-RA | 1..798 | 816..19 | 3990 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:20:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31265-RA | 909 | CG31265-RA | 30..832 | 821..19 | 4000 | 99.9 | Minus |
CG31269-RB | 937 | CG31269-RB | 599..717 | 226..108 | 235 | 79.8 | Minus |
CG4053-RB | 925 | CG4053-RB | 634..755 | 222..101 | 205 | 78.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:20:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17128241..17129043 | 821..19 | 4000 | 99.9 | Minus |
3R | 32079331 | 3R | 17127724..17127842 | 226..108 | 235 | 79.8 | Minus |
3R | 32079331 | 3R | 17131444..17131565 | 101..222 | 205 | 77.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:20:06 has no hits.
BO11757.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:15:53 Download gff for
BO11757.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31265-PA | 1..801 | 15..816 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:43:14 Download gff for
BO11757.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31265-PA | 1..801 | 15..816 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 20:37:22 Download gff for
BO11757.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31265-RA | 30..838 | 10..821 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:11:08 Download gff for
BO11757.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31265-RA | 30..838 | 10..821 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:11:08 Download gff for
BO11757.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17128241..17129049 | 10..821 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 20:37:22 Download gff for
BO11757.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12953963..12954771 | 10..821 | 99 | | Minus |
BO11757.5prime Sequence
830 bp (829 high quality bases) assembled on 2006-04-19
> BO11757.5prime
GAAGTTATCAGTCGACATGAAGCTGCTCCGTCTAAGCCTTTTAATTCTCC
TAGCGGTGAAGCCCCCAAATCCCTGTGAATCAAAGCGCATAGTTGGCCCC
TTTCCTGCGGGTCAATCTGGCAGGATAAAGGGTGGCGAGGAGGCTGAGAT
CGGATTTGCTCCATACCAGGTGTCCCTGCAACCCATAGTGGGCTCCCATA
ATTGCGGTGGTGCCATCCTAAACGAAAACTGGATCATAACTGCTGGACAC
TGCGTGGAAAATTTCATTCCCGCCCTGGTCAATGTGATCACGGGCACCAA
TAAGTGGGCAGAGCCCGGAGCGATCTACTACACCGCCGAGATCCACAAAC
ACTGTATGTACGACCAGCCTTACATGCATAACGACATCGCCCTGGTGAAG
CTTACCGAGAACATCACCTTCAATGAGCTGACACAGCCGATCGCTTTGCC
AACTAGACCGGTTCAACTCGGCGAAGAGATCGTCCTCACGGGCTGGGGCT
CCGATGTGGCCTACGGGAGTTCCATGGAGGACCTGCACAAGCTGACCGTG
GGCCTTGTTCCTCTGGATGAGTGCTATGAGACCTTCAACCGAACCAGCAG
CATGGGTGTGGGTCACATCTGCACCTTTTCGCGCGAGGGTGAGGGCGCCT
GTCACGGCGATTCCGGTGGTCCGCTGGTGAGCAATGGCCAATTGGTGGGT
GTGGTCAATTGGGGACGACCATGCGGTGTCGGACTGCCCGATGTGCAGGC
CAATGTGTACTACTACCTCGACTGGATTCGCAGCAAGCTCAGTGGCAACA
ACAAATGCTACTACGCAAGCTTTCTAGACC
BO11757.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:29:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31265-PA | 801 | CG31265-RA | 1..798 | 17..814 | 3990 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:17:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31265-RA | 909 | CG31265-RA | 30..832 | 12..814 | 4000 | 99.9 | Plus |
CG31269-RB | 937 | CG31269-RB | 599..717 | 607..725 | 235 | 79.8 | Plus |
CG4053-RB | 925 | CG4053-RB | 634..755 | 611..732 | 205 | 78.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:17:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17128241..17129043 | 12..814 | 4000 | 99.9 | Plus |
3R | 32079331 | 3R | 17127724..17127842 | 607..725 | 235 | 79.8 | Plus |
3R | 32079331 | 3R | 17131444..17131565 | 732..611 | 205 | 77.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:17:52 has no hits.
BO11757.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:15:54 Download gff for
BO11757.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31265-PA | 1..801 | 17..818 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:43:15 Download gff for
BO11757.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31265-PA | 1..801 | 17..818 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:20:27 Download gff for
BO11757.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31265-RA | 30..838 | 12..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:10:59 Download gff for
BO11757.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31265-RA | 30..838 | 12..823 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:10:59 Download gff for
BO11757.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17128241..17129049 | 12..823 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:20:27 Download gff for
BO11757.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12953963..12954771 | 12..823 | 99 | | Plus |
BO11757.complete Sequence
832 bp assembled on 2006-10-11
GenBank Submission: FJ632183
> BO11757.complete
GAAGTTATCAGTCGACATGAAGCTGCTCCGTCTAAGCCTTTTAATTCTCC
TAGCGGTGAAGCCCCCAAATCCCTGTGAATCAAAGCGCATAGTTGGCCCC
TTTCCTGCGGGTCAATCTGGCAGGATAAAGGGTGGCGAGGAGGCTGAGAT
CGGATTTGCTCCATACCAGGTGTCCCTGCAACCCATAGTGGGCTCCCATA
ATTGCGGTGGTGCCATCCTAAACGAAAACTGGATCATAACTGCTGGACAC
TGCGTGGAAAATTTCATTCCCGCCCTGGTCAATGTGATCACGGGCACCAA
TAAGTGGGCAGAGCCCGGAGCGATCTACTACACCGCCGAGATCCACAAAC
ACTGTATGTACGACCAGCCTTACATGCATAACGACATCGCCCTGGTGAAG
CTTACCGAGAACATCACCTTCAATGAGCTGACACAGCCGATCGCTTTGCC
AACTAGACCGGTTCAACTCGGCGAAGAGATCGTCCTCACGGGCTGGGGCT
CCGATGTGGCCTACGGGAGTTCCATGGAGGACCTGCACAAGCTGACCGTG
GGCCTTGTTCCTCTGGATGAGTGCTATGAGACCTTCAACCGAACCAGCAG
CATGGGTGTGGGTCACATCTGCACCTTTTCGCGCGAGGGTGAGGGCGCCT
GTCACGGCGATTCCGGTGGTCCGCTGGTGAGCAATGGCCAATTGGTGGGT
GTGGTCAATTGGGGACGACCATGCGGTGTCGGACTGCCCGATGTGCAGGC
CAATGTGTACTACTACCTCGACTGGATTCGCAGCAAGCTCAGTGGCAACA
ACAAATGCTACTACGCAAGCTTTCTAGACCAT
BO11757.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:51:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31265-RA | 801 | CG31265-PA | 1..798 | 17..814 | 3990 | 100 | Plus |
CG31269-RB | 822 | CG31269-PB | 594..712 | 607..725 | 235 | 79.8 | Plus |
CG4053-RB | 798 | CG4053-PB | 592..713 | 611..732 | 205 | 77.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:51:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31265-RA | 909 | CG31265-RA | 30..832 | 12..814 | 4000 | 99.9 | Plus |
CG31269-RB | 937 | CG31269-RB | 599..717 | 607..725 | 235 | 79.8 | Plus |
CG4053-RB | 925 | CG4053-RB | 634..755 | 611..732 | 205 | 77.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:51:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17128241..17129043 | 12..814 | 4000 | 99.9 | Plus |
3R | 32079331 | 3R | 17127724..17127842 | 607..725 | 235 | 79.8 | Plus |
3R | 32079331 | 3R | 17131444..17131565 | 732..611 | 205 | 77.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:51:26 has no hits.
BO11757.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:12:51 Download gff for
BO11757.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31265-RA | 1..801 | 17..818 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:01:52 Download gff for
BO11757.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31265-RA | 18..826 | 12..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:55:22 Download gff for
BO11757.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31265-RA | 35..832 | 17..816 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:12:51 Download gff for
BO11757.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31265-RA | 18..826 | 12..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:28:01 Download gff for
BO11757.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31265-RA | 35..832 | 17..816 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:28:01 Download gff for
BO11757.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17128246..17129043 | 17..816 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:55:22 Download gff for
BO11757.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12953968..12954765 | 17..816 | 99 | | Plus |
BO11757.pep Sequence
Translation from 16 to 832
> BO11757.pep
MKLLRLSLLILLAVKPPNPCESKRIVGPFPAGQSGRIKGGEEAEIGFAPY
QVSLQPIVGSHNCGGAILNENWIITAGHCVENFIPALVNVITGTNKWAEP
GAIYYTAEIHKHCMYDQPYMHNDIALVKLTENITFNELTQPIALPTRPVQ
LGEEIVLTGWGSDVAYGSSMEDLHKLTVGLVPLDECYETFNRTSSMGVGH
ICTFSREGEGACHGDSGGPLVSNGQLVGVVNWGRPCGVGLPDVQANVYYY
LDWIRSKLSGNNKCYYASFLDH
BO11757.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:30:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31265-PA | 266 | CG31265-PA | 1..266 | 1..266 | 1444 | 100 | Plus |
CG31269-PB | 273 | CG31269-PB | 6..265 | 8..264 | 763 | 57.9 | Plus |
CG17475-PB | 288 | CG17475-PB | 49..285 | 36..269 | 633 | 48.9 | Plus |
CG17475-PA | 288 | CG17475-PA | 49..285 | 36..269 | 633 | 48.9 | Plus |
CG17477-PA | 267 | CG17477-PA | 27..257 | 37..264 | 598 | 49.4 | Plus |