Clone BO11759 Report

Search the DGRC for BO11759

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:117
Well:59
Vector:pDNR-Dual
Associated Gene/TranscriptCG1941-RA
Protein status:BO11759.pep: validated full length
Sequenced Size:1090

Clone Sequence Records

BO11759.3prime Sequence

862 bp (832 high quality bases) assembled on 2006-04-20

> BO11759.3prime
ATGGTCTAGAAAGCTTGCGTGTATAATCAGCTTGTCCTGCTTGGAGTTCG
GTATGTACTGATCCTTGTACTTGGCGAACATCTTCTCCAGGTCGTCAATA
ACCTGTTTGTGTATCTTATCCACATAGGCTGCGTCTGGTTGATCGCTCTG
AACCACGTCGATGGGAGCGCCAACAACTTGGACAATGCGTCGACGGTTGG
GCAGAAAGCCAAAGGAGTAGTTGAAGATGCCCCGGCCAACGGGAATCAGC
GGAGATATCCCCGTTATCCTCTTTACAAAGTCTTGAAAGCGACGAACCCG
AGAGTTCGGTGGATTGGCAACCTGATCCAGAATGTCCACCTCGCCAAAGG
AAAACGTGGGAACAATCGAAGACCCTGTCCTAATGGCCATTTTAACGAAT
CCCTTGCGGTTCTTCAGTGTCAATATATATTTGCCAGGGTGCGAGTCTAG
TGCCTCCTGGGCACCACCCACCAGAATAGCCACCGCGTTGGAGGTGAACC
CATCACGATTGTCCTTGTGCTTGGGATCGTTTGATTTGGTCAGCAGATAT
ACTAAGGCCTCCTTGGAAACCGACACCAGGCCCCAAGATCTCAGGAGACC
ACGCACGATGGGCGTCAGGAAGTTTTGATCCAAAGTGGCCACCTTGGGCC
TCACCTGTGGGAACAGTTGCAGCCACTTGGAGATGTCTAGACCCATATTA
ATGGAAATGCCAGTCCCCAAAATTCCGTGCGGAAAACTGGCCAAAATGTA
GTTCTTATTCGGCGGCAGCTCTGCGGTCTTGACCAGCTGTACGGGAAAGT
AGTCCCGATAATGCCGAAACAGCCAATTGTTGCGGTTAATTTTTCAGCCA
TTGCCATCCATA

BO11759.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:29:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG1941-PA 1059 CG1941-RA 213..1056 862..19 4170 99.7 Minus
CG1942-PA 1059 CG1942-RA 541..620 534..455 200 90 Minus
CG1942-PA 1059 CG1942-RA 883..917 192..158 150 97.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:17:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG1941-RD 1203 CG1941-RD 276..1119 862..19 4190 99.8 Minus
CG1941-RC 1678 CG1941-RC 751..1594 862..19 4190 99.8 Minus
CG1941-RB 1390 CG1941-RB 463..1306 862..19 4190 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:17:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7711074..7711418 716..372 1710 99.7 Minus
2R 25286936 2R 7711476..7711676 374..174 1005 100 Minus
2R 25286936 2R 7711742..7711897 174..19 780 100 Minus
2R 25286936 2R 7710848..7710981 848..715 655 99.3 Minus
2R 25286936 2R 7713309..7713648 711..372 440 75.3 Minus
2R 25286936 2R 7713708..7713903 369..174 425 81.1 Minus
2R 25286936 2R 7715880..7716208 714..386 295 72.6 Minus
2R 25286936 2R 7716283..7716478 369..174 260 75.5 Minus
2R 25286936 2R 7713137..7713239 817..715 230 81.6 Minus
Blast to na_te.dros performed on 2015-02-12 01:17:10 has no hits.

BO11759.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:15:57 Download gff for BO11759.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1941-PA 214..1059 18..861 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:43:19 Download gff for BO11759.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1941-PA 214..1059 18..861 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:25:00 Download gff for BO11759.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1941-RB 464..1306 19..861 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:24:40 Download gff for BO11759.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1941-RB 464..1306 19..861 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:24:40 Download gff for BO11759.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7711743..7711897 19..173 100   Minus
2R 7710849..7710980 716..847 99 -> Minus
2R 7711075..7711416 374..715 99 -> Minus
2R 7711477..7711676 174..373 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:25:00 Download gff for BO11759.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3598354..3598485 716..847 99 -> Minus
arm_2R 3598580..3598921 374..715 99 -> Minus
arm_2R 3598982..3599181 174..373 100 -> Minus
arm_2R 3599248..3599402 19..173 100   Minus

BO11759.5prime Sequence

853 bp (765 high quality bases) assembled on 2006-04-19

> BO11759.5prime
GAAGTTATCAGTCGACATGAAAATCGAGTGGGCTCCCAAAGGAGTTCCCA
TGGAACGGCGTCGCCAGACGTTTGCCATGGCCTTCCTAATCCTATCCTTT
ATGATACTCTCCTTTGGATCCTATTTCTTCGTTGCTGCCGTGCTGTTCTA
TGGAAGCCTTTTGTGGCGCACCATTATGGTCATCTATTTGGTCTACGTCT
ACGCGAATCACAAGAGAACCCACTCCATTATGGATGGCAATGGCTGGAAA
ATTAACCGCAACAATTGGCTGTTTCGGCATTATCGGGACTACTTTCCCGT
ACAGCTGGTCAAGACCGCAGAGCTGCCGCCGAATAAGAACTACATTTTGG
CCAGTTTTCCGCACGGAATTTTGGGGACTGGCATTTCCATTAATATGGGT
CTAGACATCTCCAAGTGGCTGCAACTGTTCCCACAGGTGAGGCCCAAGGT
GGCCACTTTGGATCAAAACTTCCTGACGCCCATCGTGCGTGGTCTCCTGA
GATCTTGGGGCCTGGTGTCGGTTTCCAAGGAGGCCTTAGTATATCTGCTG
ACCAAATCAAACGATCCCAAGCACAAGGACAATCGTGATGGGTTCACCTC
CAACGCGGTGGCTATTCTGGTGGGTGGTGCCCAGGAGGCACTAGACTCGC
ACCCTGGCAAATATATATTGACACTGAAGAACCGCAAGGGATTCGTTAAA
ATGGCCATTAGGACAGGGTCTTCGATTGTTCCCACGTTTTCCTTTGGCGA
GGTGGACATTCTGGATCAGGTTGCCAATCCACCGAACTCTCGGGGTCGTC
GCTTTCAAGACTTTGTAAAGAGGATAAGGGGGATATCTCCGCTGATTCCC
GTT

BO11759.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:29:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG1941-PA 1059 CG1941-RA 1..837 17..853 4110 99.6 Plus
CG1942-PA 1059 CG1942-RA 541..620 557..636 200 90 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:20:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG1941-RD 1203 CG1941-RD 63..900 16..853 4145 99.6 Plus
CG1941-RC 1678 CG1941-RC 538..1375 16..853 4145 99.6 Plus
CG1941-RB 1390 CG1941-RB 250..1087 16..853 4145 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:20:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7711074..7711418 375..719 1710 99.7 Plus
2R 25286936 2R 7710848..7710981 243..376 670 100 Plus
2R 25286936 2R 7711476..7711612 717..853 655 98.5 Plus
2R 25286936 2R 7710515..7710644 16..145 650 100 Plus
2R 25286936 2R 7710695..7710793 145..243 495 100 Plus
2R 25286936 2R 7713309..7713648 380..719 440 75.3 Plus
2R 25286936 2R 7715880..7716208 377..705 295 72.6 Plus
2R 25286936 2R 7713708..7713835 722..849 235 78.9 Plus
2R 25286936 2R 7713137..7713239 274..376 230 81.6 Plus
2R 25286936 2R 7716283..7716350 722..789 190 85.3 Plus
Blast to na_te.dros performed on 2015-02-12 05:20:11 has no hits.

BO11759.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:15:58 Download gff for BO11759.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1941-PA 1..837 17..853 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:43:21 Download gff for BO11759.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1941-PA 1..837 17..853 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:58:08 Download gff for BO11759.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1941-RB 242..1087 8..853 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:31:28 Download gff for BO11759.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1941-RB 242..1087 8..853 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:31:28 Download gff for BO11759.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7710507..7710644 8..145 97 -> Plus
2R 7710696..7710793 146..243 100 -> Plus
2R 7710849..7710980 244..375 100 -> Plus
2R 7711075..7711416 376..717 99 -> Plus
2R 7711477..7711612 718..853 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:58:08 Download gff for BO11759.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3598012..3598149 8..145 97 -> Plus
arm_2R 3598201..3598298 146..243 100 -> Plus
arm_2R 3598354..3598485 244..375 100 -> Plus
arm_2R 3598580..3598921 376..717 99 -> Plus
arm_2R 3598982..3599117 718..853 98   Plus

BO11759.complete Sequence

1090 bp assembled on 2006-10-11

GenBank Submission: FJ632184

> BO11759.complete
GAAGTTATCAGTCGACATGAAAATCGAGTGGGCTCCCAAAGGAGTTCCCA
TGGAACGGCGTCGCCAGACGTTTGCCATGGCCTTCCTAATCCTATCCTTT
ATGATACTCTCCTTTGGATCCTATTTCTTCGTTGCTGCCGTGCTGTTCTA
TGGAAGCCTTTTGTGGCGCACCATTATGGTCATCTATTTGGTCTACGTCT
ACGCGAATCACAAGAGAACCCACTCCATTATGGATGGCAATGGCTGGAAA
ATTAACCGCAACAATTGGCTGTTTCGGCATTATCGGGACTACTTTCCCGT
ACAGCTGGTCAAGACCGCAGAGCTGCCGCCGAATAAGAACTACATTTTGG
CCAGTTTTCCGCACGGAATTTTGGGGACTGGCATTTCCATTAATATGGGT
CTAGACATCTCCAAGTGGCTGCAACTGTTCCCACAGGTGAGGCCCAAGGT
GGCCACTTTGGATCAAAACTTCCTGACGCCCATCGTGCGTGGTCTCCTGA
GATCTTGGGGCCTGGTGTCGGTTTCCAAGGAGGCCTTAGTATATCTGCTG
ACCAAATCAAACGATCCCAAGCACAAGGACAATCGTGATGGGTTCACCTC
CAACGCGGTGGCTATTCTGGTGGGTGGTGCCCAGGAGGCACTAGACTCGC
ACCCTGGCAAATATATATTGACACTGAAGAACCGCAAGGGATTCGTTAAA
ATGGCCATTAGGACAGGGTCTTCGATTGTTCCCACGTTTTCCTTTGGCGA
GGTGGACATTCTGGATCAGGTTGCCAATCCACCGAACTCTCGGGTTCGTC
GCTTTCAAGACTTTGTAAAGAGGATAACGGGGATATCTCCGCTGATTCCC
GTTGGCCGGGGCATCTTCAACTACTCCTTTGGCTTTCTGCCCAACCGTCG
ACGCATTGTCCAAGTTGTTGGCGCTCCCATCGACGTGGTTCAGAGCGATC
AACCAGACGCAGCCTATGTGGATAAGATACACAAACAGGTTATTGACGAC
CTGGAGAAGATGTTCGCCAAGTACAAGGATCAGTACATACCGAACTCCAA
GCAGGACAAGCTGATTATACACGCAAGCTTTCTAGACCAT

BO11759.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:29:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG1941-RD 1059 CG1941-PD 1..1056 17..1072 5265 99.9 Plus
CG1941-RC 1059 CG1941-PC 1..1056 17..1072 5265 99.9 Plus
CG1941-RB 1059 CG1941-PB 1..1056 17..1072 5265 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:29:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG1941-RD 1203 CG1941-RD 63..1119 16..1072 5270 99.9 Plus
CG1941-RC 1678 CG1941-RC 538..1594 16..1072 5270 99.9 Plus
CG1941-RB 1390 CG1941-RB 250..1306 16..1072 5270 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:29:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7711074..7711418 375..719 1710 99.7 Plus
2R 25286936 2R 7711476..7711676 717..917 1005 100 Plus
2R 25286936 2R 7711742..7711897 917..1072 780 100 Plus
2R 25286936 2R 7710848..7710981 243..376 670 100 Plus
2R 25286936 2R 7710515..7710644 16..145 650 100 Plus
2R 25286936 2R 7710695..7710793 145..243 495 100 Plus
2R 25286936 2R 7713309..7713648 380..719 440 75.3 Plus
2R 25286936 2R 7713708..7713903 722..917 425 81.1 Plus
2R 25286936 2R 7715880..7716208 377..705 295 72.6 Plus
2R 25286936 2R 7716283..7716478 722..917 260 75.5 Plus
2R 25286936 2R 7713137..7713239 274..376 230 81.6 Plus
Blast to na_te.dros performed on 2014-11-27 16:29:28 has no hits.

BO11759.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:17:37 Download gff for BO11759.complete
Subject Subject Range Query Range Percent Splice Strand
CG1941-RA 1..1059 17..1073 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:36:27 Download gff for BO11759.complete
Subject Subject Range Query Range Percent Splice Strand
CG1941-RA 113..1177 8..1072 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:44 Download gff for BO11759.complete
Subject Subject Range Query Range Percent Splice Strand
CG1941-RB 251..1306 17..1074 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:17:38 Download gff for BO11759.complete
Subject Subject Range Query Range Percent Splice Strand
CG1941-RA 113..1177 8..1072 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:19:39 Download gff for BO11759.complete
Subject Subject Range Query Range Percent Splice Strand
CG1941-RB 251..1306 17..1074 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:19:39 Download gff for BO11759.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7710516..7710644 17..145 100 -> Plus
2R 7710696..7710793 146..243 100 -> Plus
2R 7710849..7710980 244..375 100 -> Plus
2R 7711075..7711416 376..717 99 -> Plus
2R 7711477..7711676 718..917 100 -> Plus
2R 7711743..7711897 918..1074 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:44 Download gff for BO11759.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3598021..3598149 17..145 100 -> Plus
arm_2R 3598201..3598298 146..243 100 -> Plus
arm_2R 3598354..3598485 244..375 100 -> Plus
arm_2R 3598580..3598921 376..717 99 -> Plus
arm_2R 3598982..3599181 718..917 100 -> Plus
arm_2R 3599248..3599402 918..1074 98   Plus

BO11759.pep Sequence

Translation from 16 to 1090

> BO11759.pep
MKIEWAPKGVPMERRRQTFAMAFLILSFMILSFGSYFFVAAVLFYGSLLW
RTIMVIYLVYVYANHKRTHSIMDGNGWKINRNNWLFRHYRDYFPVQLVKT
AELPPNKNYILASFPHGILGTGISINMGLDISKWLQLFPQVRPKVATLDQ
NFLTPIVRGLLRSWGLVSVSKEALVYLLTKSNDPKHKDNRDGFTSNAVAI
LVGGAQEALDSHPGKYILTLKNRKGFVKMAIRTGSSIVPTFSFGEVDILD
QVANPPNSRVRRFQDFVKRITGISPLIPVGRGIFNYSFGFLPNRRRIVQV
VGAPIDVVQSDQPDAAYVDKIHKQVIDDLEKMFAKYKDQYIPNSKQDKLI
IHASFLDH

BO11759.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:46:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG1941-PD 352 CG1941-PD 1..352 1..352 1837 100 Plus
CG1941-PC 352 CG1941-PC 1..352 1..352 1837 100 Plus
CG1941-PB 352 CG1941-PB 1..352 1..352 1837 100 Plus
CG1941-PA 352 CG1941-PA 1..352 1..352 1837 100 Plus
CG1942-PA 352 CG1942-PA 1..352 1..352 1376 73 Plus