Clone Sequence Records
BO11759.3prime Sequence
862 bp (832 high quality bases) assembled on 2006-04-20
> BO11759.3prime
ATGGTCTAGAAAGCTTGCGTGTATAATCAGCTTGTCCTGCTTGGAGTTCG
GTATGTACTGATCCTTGTACTTGGCGAACATCTTCTCCAGGTCGTCAATA
ACCTGTTTGTGTATCTTATCCACATAGGCTGCGTCTGGTTGATCGCTCTG
AACCACGTCGATGGGAGCGCCAACAACTTGGACAATGCGTCGACGGTTGG
GCAGAAAGCCAAAGGAGTAGTTGAAGATGCCCCGGCCAACGGGAATCAGC
GGAGATATCCCCGTTATCCTCTTTACAAAGTCTTGAAAGCGACGAACCCG
AGAGTTCGGTGGATTGGCAACCTGATCCAGAATGTCCACCTCGCCAAAGG
AAAACGTGGGAACAATCGAAGACCCTGTCCTAATGGCCATTTTAACGAAT
CCCTTGCGGTTCTTCAGTGTCAATATATATTTGCCAGGGTGCGAGTCTAG
TGCCTCCTGGGCACCACCCACCAGAATAGCCACCGCGTTGGAGGTGAACC
CATCACGATTGTCCTTGTGCTTGGGATCGTTTGATTTGGTCAGCAGATAT
ACTAAGGCCTCCTTGGAAACCGACACCAGGCCCCAAGATCTCAGGAGACC
ACGCACGATGGGCGTCAGGAAGTTTTGATCCAAAGTGGCCACCTTGGGCC
TCACCTGTGGGAACAGTTGCAGCCACTTGGAGATGTCTAGACCCATATTA
ATGGAAATGCCAGTCCCCAAAATTCCGTGCGGAAAACTGGCCAAAATGTA
GTTCTTATTCGGCGGCAGCTCTGCGGTCTTGACCAGCTGTACGGGAAAGT
AGTCCCGATAATGCCGAAACAGCCAATTGTTGCGGTTAATTTTTCAGCCA
TTGCCATCCATA
BO11759.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:29:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1941-PA | 1059 | CG1941-RA | 213..1056 | 862..19 | 4170 | 99.7 | Minus |
CG1942-PA | 1059 | CG1942-RA | 541..620 | 534..455 | 200 | 90 | Minus |
CG1942-PA | 1059 | CG1942-RA | 883..917 | 192..158 | 150 | 97.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:17:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1941-RD | 1203 | CG1941-RD | 276..1119 | 862..19 | 4190 | 99.8 | Minus |
CG1941-RC | 1678 | CG1941-RC | 751..1594 | 862..19 | 4190 | 99.8 | Minus |
CG1941-RB | 1390 | CG1941-RB | 463..1306 | 862..19 | 4190 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:17:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7711074..7711418 | 716..372 | 1710 | 99.7 | Minus |
2R | 25286936 | 2R | 7711476..7711676 | 374..174 | 1005 | 100 | Minus |
2R | 25286936 | 2R | 7711742..7711897 | 174..19 | 780 | 100 | Minus |
2R | 25286936 | 2R | 7710848..7710981 | 848..715 | 655 | 99.3 | Minus |
2R | 25286936 | 2R | 7713309..7713648 | 711..372 | 440 | 75.3 | Minus |
2R | 25286936 | 2R | 7713708..7713903 | 369..174 | 425 | 81.1 | Minus |
2R | 25286936 | 2R | 7715880..7716208 | 714..386 | 295 | 72.6 | Minus |
2R | 25286936 | 2R | 7716283..7716478 | 369..174 | 260 | 75.5 | Minus |
2R | 25286936 | 2R | 7713137..7713239 | 817..715 | 230 | 81.6 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:17:10 has no hits.
BO11759.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:15:57 Download gff for
BO11759.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1941-PA | 214..1059 | 18..861 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:43:19 Download gff for
BO11759.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1941-PA | 214..1059 | 18..861 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:25:00 Download gff for
BO11759.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1941-RB | 464..1306 | 19..861 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:24:40 Download gff for
BO11759.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1941-RB | 464..1306 | 19..861 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:24:40 Download gff for
BO11759.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7711743..7711897 | 19..173 | 100 | | Minus |
2R | 7710849..7710980 | 716..847 | 99 | -> | Minus |
2R | 7711075..7711416 | 374..715 | 99 | -> | Minus |
2R | 7711477..7711676 | 174..373 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:25:00 Download gff for
BO11759.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3598354..3598485 | 716..847 | 99 | -> | Minus |
arm_2R | 3598580..3598921 | 374..715 | 99 | -> | Minus |
arm_2R | 3598982..3599181 | 174..373 | 100 | -> | Minus |
arm_2R | 3599248..3599402 | 19..173 | 100 | | Minus |
BO11759.5prime Sequence
853 bp (765 high quality bases) assembled on 2006-04-19
> BO11759.5prime
GAAGTTATCAGTCGACATGAAAATCGAGTGGGCTCCCAAAGGAGTTCCCA
TGGAACGGCGTCGCCAGACGTTTGCCATGGCCTTCCTAATCCTATCCTTT
ATGATACTCTCCTTTGGATCCTATTTCTTCGTTGCTGCCGTGCTGTTCTA
TGGAAGCCTTTTGTGGCGCACCATTATGGTCATCTATTTGGTCTACGTCT
ACGCGAATCACAAGAGAACCCACTCCATTATGGATGGCAATGGCTGGAAA
ATTAACCGCAACAATTGGCTGTTTCGGCATTATCGGGACTACTTTCCCGT
ACAGCTGGTCAAGACCGCAGAGCTGCCGCCGAATAAGAACTACATTTTGG
CCAGTTTTCCGCACGGAATTTTGGGGACTGGCATTTCCATTAATATGGGT
CTAGACATCTCCAAGTGGCTGCAACTGTTCCCACAGGTGAGGCCCAAGGT
GGCCACTTTGGATCAAAACTTCCTGACGCCCATCGTGCGTGGTCTCCTGA
GATCTTGGGGCCTGGTGTCGGTTTCCAAGGAGGCCTTAGTATATCTGCTG
ACCAAATCAAACGATCCCAAGCACAAGGACAATCGTGATGGGTTCACCTC
CAACGCGGTGGCTATTCTGGTGGGTGGTGCCCAGGAGGCACTAGACTCGC
ACCCTGGCAAATATATATTGACACTGAAGAACCGCAAGGGATTCGTTAAA
ATGGCCATTAGGACAGGGTCTTCGATTGTTCCCACGTTTTCCTTTGGCGA
GGTGGACATTCTGGATCAGGTTGCCAATCCACCGAACTCTCGGGGTCGTC
GCTTTCAAGACTTTGTAAAGAGGATAAGGGGGATATCTCCGCTGATTCCC
GTT
BO11759.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:29:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1941-PA | 1059 | CG1941-RA | 1..837 | 17..853 | 4110 | 99.6 | Plus |
CG1942-PA | 1059 | CG1942-RA | 541..620 | 557..636 | 200 | 90 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:20:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1941-RD | 1203 | CG1941-RD | 63..900 | 16..853 | 4145 | 99.6 | Plus |
CG1941-RC | 1678 | CG1941-RC | 538..1375 | 16..853 | 4145 | 99.6 | Plus |
CG1941-RB | 1390 | CG1941-RB | 250..1087 | 16..853 | 4145 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:20:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7711074..7711418 | 375..719 | 1710 | 99.7 | Plus |
2R | 25286936 | 2R | 7710848..7710981 | 243..376 | 670 | 100 | Plus |
2R | 25286936 | 2R | 7711476..7711612 | 717..853 | 655 | 98.5 | Plus |
2R | 25286936 | 2R | 7710515..7710644 | 16..145 | 650 | 100 | Plus |
2R | 25286936 | 2R | 7710695..7710793 | 145..243 | 495 | 100 | Plus |
2R | 25286936 | 2R | 7713309..7713648 | 380..719 | 440 | 75.3 | Plus |
2R | 25286936 | 2R | 7715880..7716208 | 377..705 | 295 | 72.6 | Plus |
2R | 25286936 | 2R | 7713708..7713835 | 722..849 | 235 | 78.9 | Plus |
2R | 25286936 | 2R | 7713137..7713239 | 274..376 | 230 | 81.6 | Plus |
2R | 25286936 | 2R | 7716283..7716350 | 722..789 | 190 | 85.3 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:20:11 has no hits.
BO11759.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:15:58 Download gff for
BO11759.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1941-PA | 1..837 | 17..853 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:43:21 Download gff for
BO11759.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1941-PA | 1..837 | 17..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:58:08 Download gff for
BO11759.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1941-RB | 242..1087 | 8..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:31:28 Download gff for
BO11759.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1941-RB | 242..1087 | 8..853 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:31:28 Download gff for
BO11759.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7710507..7710644 | 8..145 | 97 | -> | Plus |
2R | 7710696..7710793 | 146..243 | 100 | -> | Plus |
2R | 7710849..7710980 | 244..375 | 100 | -> | Plus |
2R | 7711075..7711416 | 376..717 | 99 | -> | Plus |
2R | 7711477..7711612 | 718..853 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:58:08 Download gff for
BO11759.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3598012..3598149 | 8..145 | 97 | -> | Plus |
arm_2R | 3598201..3598298 | 146..243 | 100 | -> | Plus |
arm_2R | 3598354..3598485 | 244..375 | 100 | -> | Plus |
arm_2R | 3598580..3598921 | 376..717 | 99 | -> | Plus |
arm_2R | 3598982..3599117 | 718..853 | 98 | | Plus |
BO11759.complete Sequence
1090 bp assembled on 2006-10-11
GenBank Submission: FJ632184
> BO11759.complete
GAAGTTATCAGTCGACATGAAAATCGAGTGGGCTCCCAAAGGAGTTCCCA
TGGAACGGCGTCGCCAGACGTTTGCCATGGCCTTCCTAATCCTATCCTTT
ATGATACTCTCCTTTGGATCCTATTTCTTCGTTGCTGCCGTGCTGTTCTA
TGGAAGCCTTTTGTGGCGCACCATTATGGTCATCTATTTGGTCTACGTCT
ACGCGAATCACAAGAGAACCCACTCCATTATGGATGGCAATGGCTGGAAA
ATTAACCGCAACAATTGGCTGTTTCGGCATTATCGGGACTACTTTCCCGT
ACAGCTGGTCAAGACCGCAGAGCTGCCGCCGAATAAGAACTACATTTTGG
CCAGTTTTCCGCACGGAATTTTGGGGACTGGCATTTCCATTAATATGGGT
CTAGACATCTCCAAGTGGCTGCAACTGTTCCCACAGGTGAGGCCCAAGGT
GGCCACTTTGGATCAAAACTTCCTGACGCCCATCGTGCGTGGTCTCCTGA
GATCTTGGGGCCTGGTGTCGGTTTCCAAGGAGGCCTTAGTATATCTGCTG
ACCAAATCAAACGATCCCAAGCACAAGGACAATCGTGATGGGTTCACCTC
CAACGCGGTGGCTATTCTGGTGGGTGGTGCCCAGGAGGCACTAGACTCGC
ACCCTGGCAAATATATATTGACACTGAAGAACCGCAAGGGATTCGTTAAA
ATGGCCATTAGGACAGGGTCTTCGATTGTTCCCACGTTTTCCTTTGGCGA
GGTGGACATTCTGGATCAGGTTGCCAATCCACCGAACTCTCGGGTTCGTC
GCTTTCAAGACTTTGTAAAGAGGATAACGGGGATATCTCCGCTGATTCCC
GTTGGCCGGGGCATCTTCAACTACTCCTTTGGCTTTCTGCCCAACCGTCG
ACGCATTGTCCAAGTTGTTGGCGCTCCCATCGACGTGGTTCAGAGCGATC
AACCAGACGCAGCCTATGTGGATAAGATACACAAACAGGTTATTGACGAC
CTGGAGAAGATGTTCGCCAAGTACAAGGATCAGTACATACCGAACTCCAA
GCAGGACAAGCTGATTATACACGCAAGCTTTCTAGACCAT
BO11759.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:29:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1941-RD | 1059 | CG1941-PD | 1..1056 | 17..1072 | 5265 | 99.9 | Plus |
CG1941-RC | 1059 | CG1941-PC | 1..1056 | 17..1072 | 5265 | 99.9 | Plus |
CG1941-RB | 1059 | CG1941-PB | 1..1056 | 17..1072 | 5265 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:29:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1941-RD | 1203 | CG1941-RD | 63..1119 | 16..1072 | 5270 | 99.9 | Plus |
CG1941-RC | 1678 | CG1941-RC | 538..1594 | 16..1072 | 5270 | 99.9 | Plus |
CG1941-RB | 1390 | CG1941-RB | 250..1306 | 16..1072 | 5270 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:29:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7711074..7711418 | 375..719 | 1710 | 99.7 | Plus |
2R | 25286936 | 2R | 7711476..7711676 | 717..917 | 1005 | 100 | Plus |
2R | 25286936 | 2R | 7711742..7711897 | 917..1072 | 780 | 100 | Plus |
2R | 25286936 | 2R | 7710848..7710981 | 243..376 | 670 | 100 | Plus |
2R | 25286936 | 2R | 7710515..7710644 | 16..145 | 650 | 100 | Plus |
2R | 25286936 | 2R | 7710695..7710793 | 145..243 | 495 | 100 | Plus |
2R | 25286936 | 2R | 7713309..7713648 | 380..719 | 440 | 75.3 | Plus |
2R | 25286936 | 2R | 7713708..7713903 | 722..917 | 425 | 81.1 | Plus |
2R | 25286936 | 2R | 7715880..7716208 | 377..705 | 295 | 72.6 | Plus |
2R | 25286936 | 2R | 7716283..7716478 | 722..917 | 260 | 75.5 | Plus |
2R | 25286936 | 2R | 7713137..7713239 | 274..376 | 230 | 81.6 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:29:28 has no hits.
BO11759.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:17:37 Download gff for
BO11759.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1941-RA | 1..1059 | 17..1073 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:36:27 Download gff for
BO11759.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1941-RA | 113..1177 | 8..1072 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:44 Download gff for
BO11759.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1941-RB | 251..1306 | 17..1074 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:17:38 Download gff for
BO11759.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1941-RA | 113..1177 | 8..1072 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:19:39 Download gff for
BO11759.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1941-RB | 251..1306 | 17..1074 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:19:39 Download gff for
BO11759.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7710516..7710644 | 17..145 | 100 | -> | Plus |
2R | 7710696..7710793 | 146..243 | 100 | -> | Plus |
2R | 7710849..7710980 | 244..375 | 100 | -> | Plus |
2R | 7711075..7711416 | 376..717 | 99 | -> | Plus |
2R | 7711477..7711676 | 718..917 | 100 | -> | Plus |
2R | 7711743..7711897 | 918..1074 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:44 Download gff for
BO11759.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3598021..3598149 | 17..145 | 100 | -> | Plus |
arm_2R | 3598201..3598298 | 146..243 | 100 | -> | Plus |
arm_2R | 3598354..3598485 | 244..375 | 100 | -> | Plus |
arm_2R | 3598580..3598921 | 376..717 | 99 | -> | Plus |
arm_2R | 3598982..3599181 | 718..917 | 100 | -> | Plus |
arm_2R | 3599248..3599402 | 918..1074 | 98 | | Plus |
BO11759.pep Sequence
Translation from 16 to 1090
> BO11759.pep
MKIEWAPKGVPMERRRQTFAMAFLILSFMILSFGSYFFVAAVLFYGSLLW
RTIMVIYLVYVYANHKRTHSIMDGNGWKINRNNWLFRHYRDYFPVQLVKT
AELPPNKNYILASFPHGILGTGISINMGLDISKWLQLFPQVRPKVATLDQ
NFLTPIVRGLLRSWGLVSVSKEALVYLLTKSNDPKHKDNRDGFTSNAVAI
LVGGAQEALDSHPGKYILTLKNRKGFVKMAIRTGSSIVPTFSFGEVDILD
QVANPPNSRVRRFQDFVKRITGISPLIPVGRGIFNYSFGFLPNRRRIVQV
VGAPIDVVQSDQPDAAYVDKIHKQVIDDLEKMFAKYKDQYIPNSKQDKLI
IHASFLDH
BO11759.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:46:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1941-PD | 352 | CG1941-PD | 1..352 | 1..352 | 1837 | 100 | Plus |
CG1941-PC | 352 | CG1941-PC | 1..352 | 1..352 | 1837 | 100 | Plus |
CG1941-PB | 352 | CG1941-PB | 1..352 | 1..352 | 1837 | 100 | Plus |
CG1941-PA | 352 | CG1941-PA | 1..352 | 1..352 | 1837 | 100 | Plus |
CG1942-PA | 352 | CG1942-PA | 1..352 | 1..352 | 1376 | 73 | Plus |