Clone BO11760 Report

Search the DGRC for BO11760

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:117
Well:60
Vector:pDNR-Dual
Associated Gene/TranscriptCcp84Ae-RA
Protein status:BO11760.pep: validated full length
Sequenced Size:658

Clone Sequence Records

BO11760.3prime Sequence

656 bp (655 high quality bases) assembled on 2006-04-19

> BO11760.3prime
ATGGTCTAGAAAGCTTGCCAATTGGGCGACGGTGTACGCAGGGGCGGTGT
ACCGCAGAGGCGTGGCATAGGCAGCGGTACGCAGAACGGGAGCGGGAGCA
GCCACCGCCAGAGGGGCGGAGCGGACGAACGGAGCGGCAACTGCTAGGGG
AGCGGACTTGATCAGAGGAGCAGCGACGGCCACTGGAGCGGAGCGCACAA
TGGGAGCTGGTGCGGCCAAGGCGACAGGGGCGATGGGGGCGACTGGAGCG
GCCTTGACCAATGGGGCAGCAACCTTCAGCAACGGCTCGGCGGCCACAAC
AGCGGCAAGGGGTTCACGGCGGACGACGGCGTTGAATCCGTTAATGGAAT
CGGCGGTATAGGTCACGGTGCGCTTAAAGCCATCGGCGTCGATCAGGGAG
TACTCGCCGCGGACCACGTCACCATCGCGCTCCTCCACATGCCCCTTGTT
GTCGCCGGAAAGCGTGTCCTGCACGTCGTAGCTGTAGGTGTACTGAGGAT
GCGGATCAACCTCCTCCAACTCAACGGTCTTGGCCAAAACTGGCACCGGA
GCAGAAGCCACTGCCACTGGAGCAGCAGTTCTAAGGACGGCGCCATGGGC
CACGGCGAACAGAGCCAAAGCGATAACAATCTTTGCTGCCATGTCGACTG
ATAACT

BO11760.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:29:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG1330-PA 627 Ccp84Ae-RA 1..624 642..19 3120 100 Minus
CG2341-PA 600 Ccp84Ad-RA 238..298 438..378 255 96.7 Minus
CG2360-PA 618 Ccp84Aa-RA 223..290 453..386 190 91.1 Minus
CG1252-PA 666 Ccp84Ab-RA 223..290 453..386 190 91.1 Minus
CG4052-PA 438 CG4052-RA 244..314 438..368 155 88.7 Minus
CG1331-PA 456 Ccp84Af-RA 241..298 435..378 140 89.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:58:07
Subject Length Description Subject Range Query Range Score Percent Strand
Ccp84Ae-RA 754 CG1330-RA 56..679 642..19 3120 100 Minus
Ccp84Ad-RA 735 CG2341-RA 235..434 507..308 490 83 Minus
Ccp84Ab-RA 834 CG1252-RA 266..426 468..308 400 83.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:58:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6690962..6691575 19..632 3070 100 Plus
3R 32079331 3R 6693027..6693226 507..308 490 83 Minus
3R 32079331 3R 6702376..6702536 308..468 400 83.2 Plus
3R 32079331 3R 6704409..6704569 468..308 385 82.6 Minus
X 23542271 X 5804968..5805153 507..322 375 80.1 Minus
3R 32079331 3R 6687097..6687296 507..308 325 77.5 Minus
3R 32079331 3R 6689775..6689960 322..507 315 78 Plus
2L 23513712 2L 10055357..10055444 387..300 185 80.7 Minus
Blast to na_te.dros performed on 2015-02-12 18:58:05 has no hits.

BO11760.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:15:59 Download gff for BO11760.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1330-PA 1..627 15..642 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:43:22 Download gff for BO11760.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1330-PA 1..627 15..642 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:23:57 Download gff for BO11760.3prime
Subject Subject Range Query Range Percent Splice Strand
Ccp84Ae-RA 48..682 15..650 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:29:43 Download gff for BO11760.3prime
Subject Subject Range Query Range Percent Splice Strand
Ccp84Ae-RA 48..682 15..650 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:29:43 Download gff for BO11760.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 6690963..6691577 20..636 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:23:57 Download gff for BO11760.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2516685..2517299 20..636 99   Plus

BO11760.5prime Sequence

656 bp (655 high quality bases) assembled on 2006-04-19

> BO11760.5prime
GAAGTTATCAGTCGACATGGCAGCAAAGATTGTTATCGCTTTGGCTCTGT
TCGCCGTGGCCCATGGCGCCGTCCTTAGAACTGCTGCTCCAGTGGCAGTG
GCTTCTGCTCCGGTGCCAGTTTTGGCCAAGACCGTTGAGTTGGAGGAGGT
TGATCCGCATCCTCAGTACACCTACAGCTACGACGTGCAGGACACGCTTT
CCGGCGACAACAAGGGGCATGTGGAGGAGCGCGATGGTGACGTGGTCCGC
GGCGAGTACTCCCTGATCGACGCCGATGGCTTTAAGCGCACCGTGACCTA
TACCGCCGATTCCATTAACGGATTCAACGCCGTCGTCCGCCGTGAACCCC
TTGCCGCTGTTGTGGCCGCCGAGCCGTTGCTGAAGGTTGCTGCCCCATTG
GTCAAGGCCGCTCCAGTCGCCCCCATCGCCCCTGTCGCCTTGGCCGCACC
AGCTCCCATTGTGCGCTCCGCTCCAGTGGCCGTCGCTGCTCCTCTGATCA
AGTCCGCTCCCCTAGCAGTTGCCGCTCCGTTCGTCCGCTCCGCCCCTCTG
GCGGTGGCTGCTCCCGCTCCCGTTCTGCGTACCGCTGCCTATGCCACGCC
TCTGCGGTACACCGCCCCTGCGTACACCGTCGCCCAATTGGCAAGCTTTC
TAGACC

BO11760.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:29:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG1330-PA 627 Ccp84Ae-RA 1..624 17..640 3120 100 Plus
CG2341-PA 600 Ccp84Ad-RA 238..298 221..281 255 96.7 Plus
CG2360-PA 618 Ccp84Aa-RA 223..290 206..273 190 91.1 Plus
CG1252-PA 666 Ccp84Ab-RA 223..290 206..273 190 91.1 Plus
CG4052-PA 438 CG4052-RA 244..314 221..291 155 88.7 Plus
CG1331-PA 456 Ccp84Af-RA 241..298 224..281 140 89.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 05:31:39
Subject Length Description Subject Range Query Range Score Percent Strand
Ccp84Ae-RA 754 CG1330-RA 56..679 17..640 3120 100 Plus
Ccp84Ad-RA 735 CG2341-RA 235..434 152..351 490 83 Plus
Ccp84Ab-RA 834 CG1252-RA 266..426 191..351 400 83.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 05:31:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6690962..6691575 640..27 3070 100 Minus
3R 32079331 3R 6693027..6693226 152..351 490 83 Plus
3R 32079331 3R 6702376..6702536 351..191 400 83.2 Minus
3R 32079331 3R 6704409..6704569 191..351 385 82.6 Plus
X 23542271 X 5804968..5805153 152..337 375 80.1 Plus
3R 32079331 3R 6687097..6687296 152..351 325 77.5 Plus
3R 32079331 3R 6689775..6689960 337..152 315 78 Minus
2L 23513712 2L 10055357..10055444 272..359 185 80.7 Plus
Blast to na_te.dros performed on 2015-02-04 05:31:37 has no hits.

BO11760.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:16:00 Download gff for BO11760.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1330-PA 1..627 17..644 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:43:24 Download gff for BO11760.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1330-PA 1..627 17..644 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 07:14:32 Download gff for BO11760.5prime
Subject Subject Range Query Range Percent Splice Strand
Ccp84Ae-RA 48..682 9..644 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:46:26 Download gff for BO11760.5prime
Subject Subject Range Query Range Percent Splice Strand
Ccp84Ae-RA 48..682 9..644 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:46:26 Download gff for BO11760.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 6690963..6691577 23..639 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 07:14:32 Download gff for BO11760.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2516685..2517299 23..639 99   Minus

BO11760.complete Sequence

658 bp assembled on 2006-10-11

GenBank Submission: FJ632185

> BO11760.complete
GAAGTTATCAGTCGACATGGCAGCAAAGATTGTTATCGCTTTGGCTCTGT
TCGCCGTGGCCCATGGCGCCGTCCTTAGAACTGCTGCTCCAGTGGCAGTG
GCTTCTGCTCCGGTGCCAGTTTTGGCCAAGACCGTTGAGTTGGAGGAGGT
TGATCCGCATCCTCAGTACACCTACAGCTACGACGTGCAGGACACGCTTT
CCGGCGACAACAAGGGGCATGTGGAGGAGCGCGATGGTGACGTGGTCCGC
GGCGAGTACTCCCTGATCGACGCCGATGGCTTTAAGCGCACCGTGACCTA
TACCGCCGATTCCATTAACGGATTCAACGCCGTCGTCCGCCGTGAACCCC
TTGCCGCTGTTGTGGCCGCCGAGCCGTTGCTGAAGGTTGCTGCCCCATTG
GTCAAGGCCGCTCCAGTCGCCCCCATCGCCCCTGTCGCCTTGGCCGCACC
AGCTCCCATTGTGCGCTCCGCTCCAGTGGCCGTCGCTGCTCCTCTGATCA
AGTCCGCTCCCCTAGCAGTTGCCGCTCCGTTCGTCCGCTCCGCCCCTCTG
GCGGTGGCTGCTCCCGCTCCCGTTCTGCGTACCGCTGCCTATGCCACGCC
TCTGCGGTACACCGCCCCTGCGTACACCGTCGCCCAATTGGCAAGCTTTC
TAGACCAT

BO11760.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:24:16
Subject Length Description Subject Range Query Range Score Percent Strand
Ccp84Ae-RA 627 CG1330-PA 1..624 17..640 3120 100 Plus
Ccp84Ad-RA 600 CG2341-PA 169..368 152..351 490 83 Plus
Ccp84Ab-RA 666 CG1252-PA 208..368 191..351 400 83.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:24:18
Subject Length Description Subject Range Query Range Score Percent Strand
Ccp84Ae-RA 754 CG1330-RA 56..679 17..640 3120 100 Plus
Ccp84Ad-RA 735 CG2341-RA 235..434 152..351 490 83 Plus
Ccp84Ab-RA 834 CG1252-RA 266..426 191..351 400 83.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:24:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6690962..6691575 640..27 3070 100 Minus
3R 32079331 3R 6693027..6693226 152..351 490 83 Plus
3R 32079331 3R 6702376..6702536 351..191 400 83.2 Minus
3R 32079331 3R 6704409..6704569 191..351 385 82.6 Plus
X 23542271 X 5804968..5805153 152..337 375 80.1 Plus
3R 32079331 3R 6687097..6687296 152..351 325 77.5 Plus
3R 32079331 3R 6689775..6689960 337..152 315 78 Minus
2L 23513712 2L 10055357..10055444 272..359 185 80.7 Plus
2L 23513712 2L 11945216..11945318 178..280 185 78.6 Plus
Blast to na_te.dros performed on 2014-11-28 00:24:15 has no hits.

BO11760.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:59:28 Download gff for BO11760.complete
Subject Subject Range Query Range Percent Splice Strand
Ccp84Ae-RA 1..627 17..644 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:31:33 Download gff for BO11760.complete
Subject Subject Range Query Range Percent Splice Strand
Ccp84Ae-RA 48..682 9..644 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:23:56 Download gff for BO11760.complete
Subject Subject Range Query Range Percent Splice Strand
Ccp84Ae-RA 56..679 17..642 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:59:28 Download gff for BO11760.complete
Subject Subject Range Query Range Percent Splice Strand
Ccp84Ae-RA 48..682 9..644 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:14 Download gff for BO11760.complete
Subject Subject Range Query Range Percent Splice Strand
Ccp84Ae-RA 56..679 17..642 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:14 Download gff for BO11760.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6690960..6691577 23..642 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:23:56 Download gff for BO11760.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2516682..2517299 23..642 99   Minus

BO11760.pep Sequence

Translation from 16 to 658

> BO11760.pep
MAAKIVIALALFAVAHGAVLRTAAPVAVASAPVPVLAKTVELEEVDPHPQ
YTYSYDVQDTLSGDNKGHVEERDGDVVRGEYSLIDADGFKRTVTYTADSI
NGFNAVVRREPLAAVVAAEPLLKVAAPLVKAAPVAPIAPVALAAPAPIVR
SAPVAVAAPLIKSAPLAVAAPFVRSAPLAVAAPAPVLRTAAYATPLRYTA
PAYTVAQLASFLDH

BO11760.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:48:32
Subject Length Description Subject Range Query Range Score Percent Strand
Ccp84Ae-PA 208 CG1330-PA 1..208 1..208 1020 100 Plus
Ccp84Ab-PA 221 CG1252-PA 1..212 1..214 440 50.7 Plus
Ccp84Ag-PA 191 CG2342-PA 1..184 1..210 434 51.9 Plus
Ccp84Ad-PA 199 CG2341-PA 1..194 1..202 427 52.1 Plus
Ccp84Aa-PA 205 CG2360-PA 1..200 1..202 423 52.1 Plus