Clone Sequence Records
BO11760.3prime Sequence
656 bp (655 high quality bases) assembled on 2006-04-19
> BO11760.3prime
ATGGTCTAGAAAGCTTGCCAATTGGGCGACGGTGTACGCAGGGGCGGTGT
ACCGCAGAGGCGTGGCATAGGCAGCGGTACGCAGAACGGGAGCGGGAGCA
GCCACCGCCAGAGGGGCGGAGCGGACGAACGGAGCGGCAACTGCTAGGGG
AGCGGACTTGATCAGAGGAGCAGCGACGGCCACTGGAGCGGAGCGCACAA
TGGGAGCTGGTGCGGCCAAGGCGACAGGGGCGATGGGGGCGACTGGAGCG
GCCTTGACCAATGGGGCAGCAACCTTCAGCAACGGCTCGGCGGCCACAAC
AGCGGCAAGGGGTTCACGGCGGACGACGGCGTTGAATCCGTTAATGGAAT
CGGCGGTATAGGTCACGGTGCGCTTAAAGCCATCGGCGTCGATCAGGGAG
TACTCGCCGCGGACCACGTCACCATCGCGCTCCTCCACATGCCCCTTGTT
GTCGCCGGAAAGCGTGTCCTGCACGTCGTAGCTGTAGGTGTACTGAGGAT
GCGGATCAACCTCCTCCAACTCAACGGTCTTGGCCAAAACTGGCACCGGA
GCAGAAGCCACTGCCACTGGAGCAGCAGTTCTAAGGACGGCGCCATGGGC
CACGGCGAACAGAGCCAAAGCGATAACAATCTTTGCTGCCATGTCGACTG
ATAACT
BO11760.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:29:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1330-PA | 627 | Ccp84Ae-RA | 1..624 | 642..19 | 3120 | 100 | Minus |
CG2341-PA | 600 | Ccp84Ad-RA | 238..298 | 438..378 | 255 | 96.7 | Minus |
CG2360-PA | 618 | Ccp84Aa-RA | 223..290 | 453..386 | 190 | 91.1 | Minus |
CG1252-PA | 666 | Ccp84Ab-RA | 223..290 | 453..386 | 190 | 91.1 | Minus |
CG4052-PA | 438 | CG4052-RA | 244..314 | 438..368 | 155 | 88.7 | Minus |
CG1331-PA | 456 | Ccp84Af-RA | 241..298 | 435..378 | 140 | 89.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:58:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ccp84Ae-RA | 754 | CG1330-RA | 56..679 | 642..19 | 3120 | 100 | Minus |
Ccp84Ad-RA | 735 | CG2341-RA | 235..434 | 507..308 | 490 | 83 | Minus |
Ccp84Ab-RA | 834 | CG1252-RA | 266..426 | 468..308 | 400 | 83.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:58:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6690962..6691575 | 19..632 | 3070 | 100 | Plus |
3R | 32079331 | 3R | 6693027..6693226 | 507..308 | 490 | 83 | Minus |
3R | 32079331 | 3R | 6702376..6702536 | 308..468 | 400 | 83.2 | Plus |
3R | 32079331 | 3R | 6704409..6704569 | 468..308 | 385 | 82.6 | Minus |
X | 23542271 | X | 5804968..5805153 | 507..322 | 375 | 80.1 | Minus |
3R | 32079331 | 3R | 6687097..6687296 | 507..308 | 325 | 77.5 | Minus |
3R | 32079331 | 3R | 6689775..6689960 | 322..507 | 315 | 78 | Plus |
2L | 23513712 | 2L | 10055357..10055444 | 387..300 | 185 | 80.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:58:05 has no hits.
BO11760.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:15:59 Download gff for
BO11760.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1330-PA | 1..627 | 15..642 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:43:22 Download gff for
BO11760.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1330-PA | 1..627 | 15..642 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:23:57 Download gff for
BO11760.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ccp84Ae-RA | 48..682 | 15..650 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:29:43 Download gff for
BO11760.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ccp84Ae-RA | 48..682 | 15..650 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:29:43 Download gff for
BO11760.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6690963..6691577 | 20..636 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:23:57 Download gff for
BO11760.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2516685..2517299 | 20..636 | 99 | | Plus |
BO11760.5prime Sequence
656 bp (655 high quality bases) assembled on 2006-04-19
> BO11760.5prime
GAAGTTATCAGTCGACATGGCAGCAAAGATTGTTATCGCTTTGGCTCTGT
TCGCCGTGGCCCATGGCGCCGTCCTTAGAACTGCTGCTCCAGTGGCAGTG
GCTTCTGCTCCGGTGCCAGTTTTGGCCAAGACCGTTGAGTTGGAGGAGGT
TGATCCGCATCCTCAGTACACCTACAGCTACGACGTGCAGGACACGCTTT
CCGGCGACAACAAGGGGCATGTGGAGGAGCGCGATGGTGACGTGGTCCGC
GGCGAGTACTCCCTGATCGACGCCGATGGCTTTAAGCGCACCGTGACCTA
TACCGCCGATTCCATTAACGGATTCAACGCCGTCGTCCGCCGTGAACCCC
TTGCCGCTGTTGTGGCCGCCGAGCCGTTGCTGAAGGTTGCTGCCCCATTG
GTCAAGGCCGCTCCAGTCGCCCCCATCGCCCCTGTCGCCTTGGCCGCACC
AGCTCCCATTGTGCGCTCCGCTCCAGTGGCCGTCGCTGCTCCTCTGATCA
AGTCCGCTCCCCTAGCAGTTGCCGCTCCGTTCGTCCGCTCCGCCCCTCTG
GCGGTGGCTGCTCCCGCTCCCGTTCTGCGTACCGCTGCCTATGCCACGCC
TCTGCGGTACACCGCCCCTGCGTACACCGTCGCCCAATTGGCAAGCTTTC
TAGACC
BO11760.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:29:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1330-PA | 627 | Ccp84Ae-RA | 1..624 | 17..640 | 3120 | 100 | Plus |
CG2341-PA | 600 | Ccp84Ad-RA | 238..298 | 221..281 | 255 | 96.7 | Plus |
CG2360-PA | 618 | Ccp84Aa-RA | 223..290 | 206..273 | 190 | 91.1 | Plus |
CG1252-PA | 666 | Ccp84Ab-RA | 223..290 | 206..273 | 190 | 91.1 | Plus |
CG4052-PA | 438 | CG4052-RA | 244..314 | 221..291 | 155 | 88.7 | Plus |
CG1331-PA | 456 | Ccp84Af-RA | 241..298 | 224..281 | 140 | 89.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 05:31:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ccp84Ae-RA | 754 | CG1330-RA | 56..679 | 17..640 | 3120 | 100 | Plus |
Ccp84Ad-RA | 735 | CG2341-RA | 235..434 | 152..351 | 490 | 83 | Plus |
Ccp84Ab-RA | 834 | CG1252-RA | 266..426 | 191..351 | 400 | 83.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 05:31:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6690962..6691575 | 640..27 | 3070 | 100 | Minus |
3R | 32079331 | 3R | 6693027..6693226 | 152..351 | 490 | 83 | Plus |
3R | 32079331 | 3R | 6702376..6702536 | 351..191 | 400 | 83.2 | Minus |
3R | 32079331 | 3R | 6704409..6704569 | 191..351 | 385 | 82.6 | Plus |
X | 23542271 | X | 5804968..5805153 | 152..337 | 375 | 80.1 | Plus |
3R | 32079331 | 3R | 6687097..6687296 | 152..351 | 325 | 77.5 | Plus |
3R | 32079331 | 3R | 6689775..6689960 | 337..152 | 315 | 78 | Minus |
2L | 23513712 | 2L | 10055357..10055444 | 272..359 | 185 | 80.7 | Plus |
Blast to na_te.dros performed on 2015-02-04 05:31:37 has no hits.
BO11760.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:16:00 Download gff for
BO11760.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1330-PA | 1..627 | 17..644 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:43:24 Download gff for
BO11760.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1330-PA | 1..627 | 17..644 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 07:14:32 Download gff for
BO11760.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ccp84Ae-RA | 48..682 | 9..644 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:46:26 Download gff for
BO11760.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ccp84Ae-RA | 48..682 | 9..644 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:46:26 Download gff for
BO11760.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6690963..6691577 | 23..639 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 07:14:32 Download gff for
BO11760.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2516685..2517299 | 23..639 | 99 | | Minus |
BO11760.complete Sequence
658 bp assembled on 2006-10-11
GenBank Submission: FJ632185
> BO11760.complete
GAAGTTATCAGTCGACATGGCAGCAAAGATTGTTATCGCTTTGGCTCTGT
TCGCCGTGGCCCATGGCGCCGTCCTTAGAACTGCTGCTCCAGTGGCAGTG
GCTTCTGCTCCGGTGCCAGTTTTGGCCAAGACCGTTGAGTTGGAGGAGGT
TGATCCGCATCCTCAGTACACCTACAGCTACGACGTGCAGGACACGCTTT
CCGGCGACAACAAGGGGCATGTGGAGGAGCGCGATGGTGACGTGGTCCGC
GGCGAGTACTCCCTGATCGACGCCGATGGCTTTAAGCGCACCGTGACCTA
TACCGCCGATTCCATTAACGGATTCAACGCCGTCGTCCGCCGTGAACCCC
TTGCCGCTGTTGTGGCCGCCGAGCCGTTGCTGAAGGTTGCTGCCCCATTG
GTCAAGGCCGCTCCAGTCGCCCCCATCGCCCCTGTCGCCTTGGCCGCACC
AGCTCCCATTGTGCGCTCCGCTCCAGTGGCCGTCGCTGCTCCTCTGATCA
AGTCCGCTCCCCTAGCAGTTGCCGCTCCGTTCGTCCGCTCCGCCCCTCTG
GCGGTGGCTGCTCCCGCTCCCGTTCTGCGTACCGCTGCCTATGCCACGCC
TCTGCGGTACACCGCCCCTGCGTACACCGTCGCCCAATTGGCAAGCTTTC
TAGACCAT
BO11760.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:24:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ccp84Ae-RA | 627 | CG1330-PA | 1..624 | 17..640 | 3120 | 100 | Plus |
Ccp84Ad-RA | 600 | CG2341-PA | 169..368 | 152..351 | 490 | 83 | Plus |
Ccp84Ab-RA | 666 | CG1252-PA | 208..368 | 191..351 | 400 | 83.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:24:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ccp84Ae-RA | 754 | CG1330-RA | 56..679 | 17..640 | 3120 | 100 | Plus |
Ccp84Ad-RA | 735 | CG2341-RA | 235..434 | 152..351 | 490 | 83 | Plus |
Ccp84Ab-RA | 834 | CG1252-RA | 266..426 | 191..351 | 400 | 83.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:24:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6690962..6691575 | 640..27 | 3070 | 100 | Minus |
3R | 32079331 | 3R | 6693027..6693226 | 152..351 | 490 | 83 | Plus |
3R | 32079331 | 3R | 6702376..6702536 | 351..191 | 400 | 83.2 | Minus |
3R | 32079331 | 3R | 6704409..6704569 | 191..351 | 385 | 82.6 | Plus |
X | 23542271 | X | 5804968..5805153 | 152..337 | 375 | 80.1 | Plus |
3R | 32079331 | 3R | 6687097..6687296 | 152..351 | 325 | 77.5 | Plus |
3R | 32079331 | 3R | 6689775..6689960 | 337..152 | 315 | 78 | Minus |
2L | 23513712 | 2L | 10055357..10055444 | 272..359 | 185 | 80.7 | Plus |
2L | 23513712 | 2L | 11945216..11945318 | 178..280 | 185 | 78.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:24:15 has no hits.
BO11760.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:59:28 Download gff for
BO11760.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ccp84Ae-RA | 1..627 | 17..644 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:31:33 Download gff for
BO11760.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ccp84Ae-RA | 48..682 | 9..644 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:23:56 Download gff for
BO11760.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ccp84Ae-RA | 56..679 | 17..642 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:59:28 Download gff for
BO11760.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ccp84Ae-RA | 48..682 | 9..644 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:14 Download gff for
BO11760.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ccp84Ae-RA | 56..679 | 17..642 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:14 Download gff for
BO11760.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6690960..6691577 | 23..642 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:23:56 Download gff for
BO11760.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2516682..2517299 | 23..642 | 99 | | Minus |
BO11760.pep Sequence
Translation from 16 to 658
> BO11760.pep
MAAKIVIALALFAVAHGAVLRTAAPVAVASAPVPVLAKTVELEEVDPHPQ
YTYSYDVQDTLSGDNKGHVEERDGDVVRGEYSLIDADGFKRTVTYTADSI
NGFNAVVRREPLAAVVAAEPLLKVAAPLVKAAPVAPIAPVALAAPAPIVR
SAPVAVAAPLIKSAPLAVAAPFVRSAPLAVAAPAPVLRTAAYATPLRYTA
PAYTVAQLASFLDH
BO11760.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:48:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ccp84Ae-PA | 208 | CG1330-PA | 1..208 | 1..208 | 1020 | 100 | Plus |
Ccp84Ab-PA | 221 | CG1252-PA | 1..212 | 1..214 | 440 | 50.7 | Plus |
Ccp84Ag-PA | 191 | CG2342-PA | 1..184 | 1..210 | 434 | 51.9 | Plus |
Ccp84Ad-PA | 199 | CG2341-PA | 1..194 | 1..202 | 427 | 52.1 | Plus |
Ccp84Aa-PA | 205 | CG2360-PA | 1..200 | 1..202 | 423 | 52.1 | Plus |