Clone BO11765 Report

Search the DGRC for BO11765

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:117
Well:65
Vector:pDNR-Dual
Associated Gene/TranscriptCG13743-RA
Protein status:BO11765.pep: validated full length
Sequenced Size:1618

Clone Sequence Records

BO11765.3prime Sequence

830 bp (829 high quality bases) assembled on 2006-04-19

> BO11765.3prime
ATGGTCTAGAAAGCTTGCGTTCGAGGAGGTGGTGTTCTGAAACTCCTGCC
GGCAGTAACCCATCACAATGTCCGATCGGCAGTCGCCGCCCATTAGACCC
GGCAGGAGCACCGCCGCCCCCAAGATGGTCACCAGGGCTCCGAAGACCAC
CAGGCCCAGAGCGGGCAGCTTCTCCCGGCTGAGCAGGGCGTGCGGCTCCA
TCTGAATGTAGGCCAGGCCGGGCAGGATGTAGGCCAGGGGAATGGCCGCC
AGGAGACCATTCAGCTCCAGCACCGAACCCAGGCAGTCGGTCATGGGCGA
GATGACGAAGGCGCTGAACACGATGGCCATGGTAATGGCTTTCGAGTACT
CATCGATAATGGCCCCCTTCTCCAGGCTGGGGTCCTTGTCCTGGGTGAAC
TCGCTGATGGGCTCCTTCAGCACGAACCGATGGACGAGGGCGCGCACAAT
CTCGCGGGACACGAAGCACTCGATGGGGAAGGTCAGGAGTATCGATATGG
AGAAGAGCACACGCGAGAAGTTCATCAGGTCGTCATCCCAGCAGTAGTTC
TCCAGCAGGTCGCCTTGGGAAAGAGCGCGGAAGGTGGAGTAGCCGGCGAT
GCCGAAGAGGGCCGCCACCGTCCAGGCAAATCCAATCGAAATGTGGGTGA
CCTTCTCCCAGCGCTCCATGGTCGCGTCGCGCATCGATTGATAAACGAGG
AAGGTGTTGTGATGACACATGAAAGCGAAGACCATGATGCCCGTGGCCGG
GATTAGATCCGAGTTGGCGAACCGCCACGATTCCGCCGTGTCCGTCACCT
TATAATCGCCCGACATGAGCTTGATGATGA

BO11765.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:30:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG13743-PA 1587 CG13743-RA 773..1584 830..19 4060 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 20:10:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG13743-RB 3463 CG13743-RB 993..1804 830..19 4060 100 Minus
CG13743-RA 3523 CG13743-RA 1053..1864 830..19 4060 100 Minus
CG13743-RC 3195 CG13743-RC 992..1536 563..19 2725 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 20:10:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9046509..9046748 19..258 1200 100 Plus
2R 25286936 2R 9047657..9047851 258..452 975 100 Plus
2R 25286936 2R 9048175..9048338 563..726 820 100 Plus
2R 25286936 2R 9047914..9048028 451..565 575 100 Plus
2R 25286936 2R 9048467..9048537 726..796 355 100 Plus
Blast to na_te.dros performed on 2015-01-31 20:10:20 has no hits.

BO11765.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:16:06 Download gff for BO11765.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13743-PA 774..1587 15..829 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:43:33 Download gff for BO11765.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13743-PA 774..1587 15..829 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 11:37:06 Download gff for BO11765.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13743-RA 1054..1870 11..829 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 22:49:53 Download gff for BO11765.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13743-RA 1054..1870 11..829 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 22:49:53 Download gff for BO11765.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9046503..9046748 11..258 98 <- Plus
2R 9047658..9047849 259..450 100 <- Plus
2R 9047914..9048026 451..563 100 <- Plus
2R 9048176..9048337 564..725 100 <- Plus
2R 9048467..9048537 726..796 100 <- Plus
2R 9049880..9049912 797..829 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 11:37:06 Download gff for BO11765.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4935681..4935842 564..725 100 <- Plus
arm_2R 4935972..4936042 726..796 100 <- Plus
arm_2R 4937385..4937417 797..829 100   Plus
arm_2R 4935163..4935354 259..450 100 <- Plus
arm_2R 4934008..4934253 11..258 98 <- Plus
arm_2R 4935419..4935531 451..563 100 <- Plus

BO11765.5prime Sequence

899 bp (815 high quality bases) assembled on 2006-04-19

> BO11765.5prime
GAAGTTATCAGTCGACATGAACATGAACATGAACGACAGTCGACGCAACA
CCGCCACGGAATTCAGCTATATCCTGCAGCGCCAGGGCAGCGATGTGTCG
GTTGCCGAGGCTTATGCATTCGATGACTTCAACAATATAATGAAGAACAA
CCATCAGACACATCAGCAACAGGGCCAGCCGCAACAGCCACATCAGCAGC
AGCAGCAGCCGCCGCAGCAGCAGCAGCAGCAACAGCATCGCCAGCATTCG
CAGCAGCAGCAGCAAGCACAGCAGGATGCCGGACTGGGGGACACGCTGTC
CTCGCTGCCACAGGCCTCGTTCAACTACATCAACTCCATCGTGGGCAGCG
GCGTCATCGGCATACCCTACGCCCTTCACAGGGCCGGATTCGGGCTGGGC
CTGGCCCTGCTCATCCTGGTGGCCTACATCACCGACTACTCACTCATCCT
GATGGTCAGATGCGGCCACATCTGCGGTCGGTTCAGCTATCCGGGCATCA
TGGAGGCAGCCTACGGCAAGTACGGCTATTACCTGCTCTCCCTGCTGCAG
TTCATGTATCCATTCCTGGCCATGATTTCCTACAACGTGGTGGTGGGCGA
TACGCTGTCGAAGGTTCTGGTCCGCTTCTTCCCCTCCTGGGGCGGTTCCA
TGGGCGCCGTCCGACTGGGCGTGGTCTTCTTCGTCAACGTGGGCGTGGTG
ATGCCCCTCTGTCTCTACAAGAACGTCTCCAGACTGGCCAGAGCCAGCTT
CATTAGCCTGGCGTGCGTGGTCTTCATCCTGTTTGCCGTCATCATCAAGC
TCATGTCGGGCGATTATAAGGTGACGGACACGGCGGAATCGTGGCGGTTC
GCCAACTCGGATCTAATCCCGGCCACGGGCATCATGGTCTTCGCTTTCA

BO11765.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:30:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG13743-PA 1587 CG13743-RA 1..883 17..899 4365 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:47:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG13743-RA 3523 CG13743-RA 279..1163 15..899 4395 99.8 Plus
CG13743-RB 3463 CG13743-RB 348..1103 144..899 3750 99.7 Plus
CG13743-RC 3195 CG13743-RC 313..992 144..823 3370 99.7 Plus
CG13743-RB 3463 CG13743-RB 279..349 15..85 355 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:47:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9050841..9051153 456..144 1550 99.7 Minus
2R 25286936 2R 9049879..9050133 823..569 1275 100 Minus
2R 25286936 2R 9050515..9050630 569..454 565 99.1 Minus
2R 25286936 2R 9059254..9059325 86..15 360 100 Minus
2R 25286936 2R 9048467..9048537 893..823 355 100 Minus
2R 25286936 2R 9056573..9056636 145..82 320 100 Minus
Blast to na_te.dros performed on 2015-02-11 16:47:41 has no hits.

BO11765.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:16:08 Download gff for BO11765.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13743-PA 1..882 17..898 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:43:35 Download gff for BO11765.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13743-PA 1..882 17..898 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:46:50 Download gff for BO11765.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13743-RA 275..1162 10..898 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:21:21 Download gff for BO11765.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13743-RA 275..1162 10..898 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:21:21 Download gff for BO11765.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9048461..9048537 823..898 94 <- Minus
2R 9049880..9050132 570..822 100 <- Minus
2R 9050515..9050629 455..569 99 <- Minus
2R 9050843..9051151 146..454 99 <- Minus
2R 9056573..9056632 86..145 100 <- Minus
2R 9059255..9059329 10..85 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:46:50 Download gff for BO11765.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4935966..4936042 823..898 94 <- Minus
arm_2R 4937385..4937637 570..822 100 <- Minus
arm_2R 4938020..4938134 455..569 99 <- Minus
arm_2R 4938348..4938656 146..454 99 <- Minus
arm_2R 4944078..4944137 86..145 100 <- Minus
arm_2R 4946760..4946834 10..85 97   Minus

BO11765.complete Sequence

1618 bp assembled on 2006-10-11

GenBank Submission: FJ632186

> BO11765.complete
GAAGTTATCAGTCGACATGAACATGAACATGAACGACAGTCGACGCAACA
CCGCCACGGAATTCAGCTATATCCTGCAGCGCCAGGGCAGCGATGTGTCG
GTTGCCGAGGCTTATGCATTCGATGACTTCAACAATATAATGAAGAACAA
CCATCAGACACATCAGCAACAGGGCCAGCCGCAACAGCCACATCAGCAGC
AGCAGCAGCCGCCGCAGCAGCAGCAGCAGCAACAGCATCGCCAGCATTCG
CAGCAGCAGCAGCAAGCACAGCAGGATGCCGGACTGGGGGACACGCTGTC
CTCGCTGCCACAGGCCTCGTTCAACTACATCAACTCCATCGTGGGCAGCG
GCGTCATCGGCATACCCTACGCCCTTCACAGGGCCGGATTCGGGCTGGGC
CTGGCCCTGCTCATCCTGGTGGCCTACATCACCGACTACTCACTCATCCT
GATGGTCAGATGCGGCCACATCTGCGGTCGGTTCAGCTATCCGGGCATCA
TGGAGGCAGCCTACGGCAAGTACGGCTATTACCTGCTCTCCCTGCTGCAG
TTCATGTATCCATTCCTGGCCATGATTTCCTACAACGTGGTGGTGGGCGA
TACGCTGTCGAAGGTTCTGGTCCGCTTCTTCCCCTCCTGGGGCGGTTCCA
TGGGCGCCGTCCGACTGGGCGTGGTCTTCTTCGTCAACGTGGGCGTGGTG
ATGCCCCTCTGTCTCTACAAGAACGTCTCCAGACTGGCCAGAGCCAGCTT
CATTAGCCTGGCGTGCGTGGTCTTCATCCTGTTTGCCGTCATCATCAAGC
TCATGTCGGGCGATTATAAGGTGACGGACACGGCGGAATCGTGGCGGTTC
GCCAACTCGGATCTAATCCCGGCCACGGGCATCATGGTCTTCGCTTTCAT
GTGTCATCACAACACCTTCCTCGTTTATCAATCGATGCGCGACGCGACCA
TGGAGCGCTGGGAGAAGGTCACCCACATTTCGATTGGATTTGCCTGGACG
GTGGCGGCCCTCTTCGGCATCGCCGGCTACTCCACCTTCCGCGCTCTTTC
CCAAGGCGACCTGCTGGAGAACTACTGCTGGGATGACGACCTGATGAACT
TCTCGCGTGTGCTCTTCTCCATATCGATACTCCTGACCTTCCCCATCGAG
TGCTTCGTGTCCCGCGAGATTGTGCGCGCCCTCGTCCATCGGTTCGTGCT
GAAGGAGCCCATCAGCGAGTTCACCCAGGACAAGGACCCCAGCCTGGAGA
AGGGGGCCATTATCGATGAGTACTCGAAAGCCATTACCATGGCCATCGTG
TTCAGCGCCTTCGTCATCTCGCCCATGACCGACTGCCTGGGTTCGGTGCT
GGAGCTGAATGGTCTCCTGGCGGCCATTCCCCTGGCCTACATCCTGCCCG
GCCTGGCCTACATTCAGATGGAGCCGCACGCCCTGCTCAGCCGGGAGAAG
CTGCCCGCTCTGGGCCTGGTGGTCTTCGGAGCCCTGGTGACCATCTTGGG
GGCGGCGGTGCTCCTGCCGGGTCTAATGGGCGGCGACTGCCGATCGGACA
TTGTGATGGGTTACTGCCGGCAGGAGTTTCAGAACACCACCTCCTCGAAC
GCAAGCTTTCTAGACCAT

BO11765.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:21:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG13743-RA 1587 CG13743-PA 1..1584 17..1600 7890 99.9 Plus
CG13743-RB 1527 CG13743-PB 68..1524 144..1600 7255 99.9 Plus
CG13743-RC 777 CG13743-PC 68..747 144..823 3370 99.7 Plus
CG13743-RB 1527 CG13743-PB 1..69 17..85 345 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:22:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG13743-RA 3523 CG13743-RA 279..1864 15..1600 7900 99.9 Plus
CG13743-RB 3463 CG13743-RB 348..1804 144..1600 7255 99.9 Plus
CG13743-RC 3195 CG13743-RC 313..992 144..823 3370 99.7 Plus
CG13743-RB 3463 CG13743-RB 279..349 15..85 355 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:21:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9050841..9051153 456..144 1550 99.7 Minus
2R 25286936 2R 9049879..9050133 823..569 1275 100 Minus
2R 25286936 2R 9046509..9046748 1600..1361 1200 100 Minus
2R 25286936 2R 9047657..9047851 1361..1167 975 100 Minus
2R 25286936 2R 9048175..9048338 1056..893 820 100 Minus
2R 25286936 2R 9047914..9048028 1168..1054 575 100 Minus
2R 25286936 2R 9050515..9050630 569..454 565 99.1 Minus
2R 25286936 2R 9059254..9059325 86..15 360 100 Minus
2R 25286936 2R 9048467..9048537 893..823 355 100 Minus
2R 25286936 2R 9056573..9056636 145..82 320 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:21:57 has no hits.

BO11765.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:49:42 Download gff for BO11765.complete
Subject Subject Range Query Range Percent Splice Strand
CG13743-RA 1..1587 17..1604 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:52:24 Download gff for BO11765.complete
Subject Subject Range Query Range Percent Splice Strand
CG13743-RA 280..1863 17..1602 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:29:13 Download gff for BO11765.complete
Subject Subject Range Query Range Percent Splice Strand
CG13743-RA 281..1864 17..1602 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:49:42 Download gff for BO11765.complete
Subject Subject Range Query Range Percent Splice Strand
CG13743-RA 274..1869 10..1608 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:16:48 Download gff for BO11765.complete
Subject Subject Range Query Range Percent Splice Strand
CG13743-RA 281..1864 17..1602 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:16:48 Download gff for BO11765.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9048176..9048337 894..1055 100 <- Minus
2R 9048467..9048537 823..893 100 <- Minus
2R 9049880..9050132 570..822 100 <- Minus
2R 9050515..9050629 455..569 99 <- Minus
2R 9050843..9051151 146..454 99 <- Minus
2R 9056573..9056632 86..145 100 <- Minus
2R 9059255..9059323 17..85 100   Minus
2R 9046507..9046748 1361..1602 99 <- Minus
2R 9047658..9047849 1169..1360 100 <- Minus
2R 9047914..9048026 1056..1168 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:29:13 Download gff for BO11765.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4934012..4934253 1361..1602 99 <- Minus
arm_2R 4935163..4935354 1169..1360 100 <- Minus
arm_2R 4935419..4935531 1056..1168 100 <- Minus
arm_2R 4935681..4935842 894..1055 100 <- Minus
arm_2R 4935972..4936042 823..893 100 <- Minus
arm_2R 4937385..4937637 570..822 100 <- Minus
arm_2R 4938020..4938134 455..569 99 <- Minus
arm_2R 4938348..4938656 146..454 99 <- Minus
arm_2R 4944078..4944137 86..145 100 <- Minus
arm_2R 4946760..4946828 17..85 100   Minus

BO11765.pep Sequence

Translation from 16 to 1618

> BO11765.pep
MNMNMNDSRRNTATEFSYILQRQGSDVSVAEAYAFDDFNNIMKNNHQTHQ
QQGQPQQPHQQQQQPPQQQQQQQHRQHSQQQQQAQQDAGLGDTLSSLPQA
SFNYINSIVGSGVIGIPYALHRAGFGLGLALLILVAYITDYSLILMVRCG
HICGRFSYPGIMEAAYGKYGYYLLSLLQFMYPFLAMISYNVVVGDTLSKV
LVRFFPSWGGSMGAVRLGVVFFVNVGVVMPLCLYKNVSRLARASFISLAC
VVFILFAVIIKLMSGDYKVTDTAESWRFANSDLIPATGIMVFAFMCHHNT
FLVYQSMRDATMERWEKVTHISIGFAWTVAALFGIAGYSTFRALSQGDLL
ENYCWDDDLMNFSRVLFSISILLTFPIECFVSREIVRALVHRFVLKEPIS
EFTQDKDPSLEKGAIIDEYSKAITMAIVFSAFVISPMTDCLGSVLELNGL
LAAIPLAYILPGLAYIQMEPHALLSREKLPALGLVVFGALVTILGAAVLL
PGLMGGDCRSDIVMGYCRQEFQNTTSSNASFLDH

BO11765.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:31:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG13743-PA 528 CG13743-PA 1..528 1..528 2725 100 Plus
CG13743-PB 508 CG13743-PB 1..508 1..528 2592 96.2 Plus
CG13743-PC 258 CG13743-PC 1..254 1..274 1262 91.2 Plus
CG30394-PB 831 CG30394-PB 13..387 106..495 207 21.7 Plus
CG30394-PA 831 CG30394-PA 13..387 106..495 207 21.7 Plus