Clone Sequence Records
BO11765.3prime Sequence
830 bp (829 high quality bases) assembled on 2006-04-19
> BO11765.3prime
ATGGTCTAGAAAGCTTGCGTTCGAGGAGGTGGTGTTCTGAAACTCCTGCC
GGCAGTAACCCATCACAATGTCCGATCGGCAGTCGCCGCCCATTAGACCC
GGCAGGAGCACCGCCGCCCCCAAGATGGTCACCAGGGCTCCGAAGACCAC
CAGGCCCAGAGCGGGCAGCTTCTCCCGGCTGAGCAGGGCGTGCGGCTCCA
TCTGAATGTAGGCCAGGCCGGGCAGGATGTAGGCCAGGGGAATGGCCGCC
AGGAGACCATTCAGCTCCAGCACCGAACCCAGGCAGTCGGTCATGGGCGA
GATGACGAAGGCGCTGAACACGATGGCCATGGTAATGGCTTTCGAGTACT
CATCGATAATGGCCCCCTTCTCCAGGCTGGGGTCCTTGTCCTGGGTGAAC
TCGCTGATGGGCTCCTTCAGCACGAACCGATGGACGAGGGCGCGCACAAT
CTCGCGGGACACGAAGCACTCGATGGGGAAGGTCAGGAGTATCGATATGG
AGAAGAGCACACGCGAGAAGTTCATCAGGTCGTCATCCCAGCAGTAGTTC
TCCAGCAGGTCGCCTTGGGAAAGAGCGCGGAAGGTGGAGTAGCCGGCGAT
GCCGAAGAGGGCCGCCACCGTCCAGGCAAATCCAATCGAAATGTGGGTGA
CCTTCTCCCAGCGCTCCATGGTCGCGTCGCGCATCGATTGATAAACGAGG
AAGGTGTTGTGATGACACATGAAAGCGAAGACCATGATGCCCGTGGCCGG
GATTAGATCCGAGTTGGCGAACCGCCACGATTCCGCCGTGTCCGTCACCT
TATAATCGCCCGACATGAGCTTGATGATGA
BO11765.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:30:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13743-PA | 1587 | CG13743-RA | 773..1584 | 830..19 | 4060 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 20:10:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13743-RB | 3463 | CG13743-RB | 993..1804 | 830..19 | 4060 | 100 | Minus |
CG13743-RA | 3523 | CG13743-RA | 1053..1864 | 830..19 | 4060 | 100 | Minus |
CG13743-RC | 3195 | CG13743-RC | 992..1536 | 563..19 | 2725 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 20:10:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9046509..9046748 | 19..258 | 1200 | 100 | Plus |
2R | 25286936 | 2R | 9047657..9047851 | 258..452 | 975 | 100 | Plus |
2R | 25286936 | 2R | 9048175..9048338 | 563..726 | 820 | 100 | Plus |
2R | 25286936 | 2R | 9047914..9048028 | 451..565 | 575 | 100 | Plus |
2R | 25286936 | 2R | 9048467..9048537 | 726..796 | 355 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 20:10:20 has no hits.
BO11765.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:16:06 Download gff for
BO11765.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13743-PA | 774..1587 | 15..829 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:43:33 Download gff for
BO11765.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13743-PA | 774..1587 | 15..829 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 11:37:06 Download gff for
BO11765.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13743-RA | 1054..1870 | 11..829 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 22:49:53 Download gff for
BO11765.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13743-RA | 1054..1870 | 11..829 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 22:49:53 Download gff for
BO11765.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9046503..9046748 | 11..258 | 98 | <- | Plus |
2R | 9047658..9047849 | 259..450 | 100 | <- | Plus |
2R | 9047914..9048026 | 451..563 | 100 | <- | Plus |
2R | 9048176..9048337 | 564..725 | 100 | <- | Plus |
2R | 9048467..9048537 | 726..796 | 100 | <- | Plus |
2R | 9049880..9049912 | 797..829 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 11:37:06 Download gff for
BO11765.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4935681..4935842 | 564..725 | 100 | <- | Plus |
arm_2R | 4935972..4936042 | 726..796 | 100 | <- | Plus |
arm_2R | 4937385..4937417 | 797..829 | 100 | | Plus |
arm_2R | 4935163..4935354 | 259..450 | 100 | <- | Plus |
arm_2R | 4934008..4934253 | 11..258 | 98 | <- | Plus |
arm_2R | 4935419..4935531 | 451..563 | 100 | <- | Plus |
BO11765.5prime Sequence
899 bp (815 high quality bases) assembled on 2006-04-19
> BO11765.5prime
GAAGTTATCAGTCGACATGAACATGAACATGAACGACAGTCGACGCAACA
CCGCCACGGAATTCAGCTATATCCTGCAGCGCCAGGGCAGCGATGTGTCG
GTTGCCGAGGCTTATGCATTCGATGACTTCAACAATATAATGAAGAACAA
CCATCAGACACATCAGCAACAGGGCCAGCCGCAACAGCCACATCAGCAGC
AGCAGCAGCCGCCGCAGCAGCAGCAGCAGCAACAGCATCGCCAGCATTCG
CAGCAGCAGCAGCAAGCACAGCAGGATGCCGGACTGGGGGACACGCTGTC
CTCGCTGCCACAGGCCTCGTTCAACTACATCAACTCCATCGTGGGCAGCG
GCGTCATCGGCATACCCTACGCCCTTCACAGGGCCGGATTCGGGCTGGGC
CTGGCCCTGCTCATCCTGGTGGCCTACATCACCGACTACTCACTCATCCT
GATGGTCAGATGCGGCCACATCTGCGGTCGGTTCAGCTATCCGGGCATCA
TGGAGGCAGCCTACGGCAAGTACGGCTATTACCTGCTCTCCCTGCTGCAG
TTCATGTATCCATTCCTGGCCATGATTTCCTACAACGTGGTGGTGGGCGA
TACGCTGTCGAAGGTTCTGGTCCGCTTCTTCCCCTCCTGGGGCGGTTCCA
TGGGCGCCGTCCGACTGGGCGTGGTCTTCTTCGTCAACGTGGGCGTGGTG
ATGCCCCTCTGTCTCTACAAGAACGTCTCCAGACTGGCCAGAGCCAGCTT
CATTAGCCTGGCGTGCGTGGTCTTCATCCTGTTTGCCGTCATCATCAAGC
TCATGTCGGGCGATTATAAGGTGACGGACACGGCGGAATCGTGGCGGTTC
GCCAACTCGGATCTAATCCCGGCCACGGGCATCATGGTCTTCGCTTTCA
BO11765.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:30:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13743-PA | 1587 | CG13743-RA | 1..883 | 17..899 | 4365 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:47:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13743-RA | 3523 | CG13743-RA | 279..1163 | 15..899 | 4395 | 99.8 | Plus |
CG13743-RB | 3463 | CG13743-RB | 348..1103 | 144..899 | 3750 | 99.7 | Plus |
CG13743-RC | 3195 | CG13743-RC | 313..992 | 144..823 | 3370 | 99.7 | Plus |
CG13743-RB | 3463 | CG13743-RB | 279..349 | 15..85 | 355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:47:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9050841..9051153 | 456..144 | 1550 | 99.7 | Minus |
2R | 25286936 | 2R | 9049879..9050133 | 823..569 | 1275 | 100 | Minus |
2R | 25286936 | 2R | 9050515..9050630 | 569..454 | 565 | 99.1 | Minus |
2R | 25286936 | 2R | 9059254..9059325 | 86..15 | 360 | 100 | Minus |
2R | 25286936 | 2R | 9048467..9048537 | 893..823 | 355 | 100 | Minus |
2R | 25286936 | 2R | 9056573..9056636 | 145..82 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:47:41 has no hits.
BO11765.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:16:08 Download gff for
BO11765.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13743-PA | 1..882 | 17..898 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:43:35 Download gff for
BO11765.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13743-PA | 1..882 | 17..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:46:50 Download gff for
BO11765.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13743-RA | 275..1162 | 10..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:21:21 Download gff for
BO11765.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13743-RA | 275..1162 | 10..898 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:21:21 Download gff for
BO11765.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9048461..9048537 | 823..898 | 94 | <- | Minus |
2R | 9049880..9050132 | 570..822 | 100 | <- | Minus |
2R | 9050515..9050629 | 455..569 | 99 | <- | Minus |
2R | 9050843..9051151 | 146..454 | 99 | <- | Minus |
2R | 9056573..9056632 | 86..145 | 100 | <- | Minus |
2R | 9059255..9059329 | 10..85 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:46:50 Download gff for
BO11765.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4935966..4936042 | 823..898 | 94 | <- | Minus |
arm_2R | 4937385..4937637 | 570..822 | 100 | <- | Minus |
arm_2R | 4938020..4938134 | 455..569 | 99 | <- | Minus |
arm_2R | 4938348..4938656 | 146..454 | 99 | <- | Minus |
arm_2R | 4944078..4944137 | 86..145 | 100 | <- | Minus |
arm_2R | 4946760..4946834 | 10..85 | 97 | | Minus |
BO11765.complete Sequence
1618 bp assembled on 2006-10-11
GenBank Submission: FJ632186
> BO11765.complete
GAAGTTATCAGTCGACATGAACATGAACATGAACGACAGTCGACGCAACA
CCGCCACGGAATTCAGCTATATCCTGCAGCGCCAGGGCAGCGATGTGTCG
GTTGCCGAGGCTTATGCATTCGATGACTTCAACAATATAATGAAGAACAA
CCATCAGACACATCAGCAACAGGGCCAGCCGCAACAGCCACATCAGCAGC
AGCAGCAGCCGCCGCAGCAGCAGCAGCAGCAACAGCATCGCCAGCATTCG
CAGCAGCAGCAGCAAGCACAGCAGGATGCCGGACTGGGGGACACGCTGTC
CTCGCTGCCACAGGCCTCGTTCAACTACATCAACTCCATCGTGGGCAGCG
GCGTCATCGGCATACCCTACGCCCTTCACAGGGCCGGATTCGGGCTGGGC
CTGGCCCTGCTCATCCTGGTGGCCTACATCACCGACTACTCACTCATCCT
GATGGTCAGATGCGGCCACATCTGCGGTCGGTTCAGCTATCCGGGCATCA
TGGAGGCAGCCTACGGCAAGTACGGCTATTACCTGCTCTCCCTGCTGCAG
TTCATGTATCCATTCCTGGCCATGATTTCCTACAACGTGGTGGTGGGCGA
TACGCTGTCGAAGGTTCTGGTCCGCTTCTTCCCCTCCTGGGGCGGTTCCA
TGGGCGCCGTCCGACTGGGCGTGGTCTTCTTCGTCAACGTGGGCGTGGTG
ATGCCCCTCTGTCTCTACAAGAACGTCTCCAGACTGGCCAGAGCCAGCTT
CATTAGCCTGGCGTGCGTGGTCTTCATCCTGTTTGCCGTCATCATCAAGC
TCATGTCGGGCGATTATAAGGTGACGGACACGGCGGAATCGTGGCGGTTC
GCCAACTCGGATCTAATCCCGGCCACGGGCATCATGGTCTTCGCTTTCAT
GTGTCATCACAACACCTTCCTCGTTTATCAATCGATGCGCGACGCGACCA
TGGAGCGCTGGGAGAAGGTCACCCACATTTCGATTGGATTTGCCTGGACG
GTGGCGGCCCTCTTCGGCATCGCCGGCTACTCCACCTTCCGCGCTCTTTC
CCAAGGCGACCTGCTGGAGAACTACTGCTGGGATGACGACCTGATGAACT
TCTCGCGTGTGCTCTTCTCCATATCGATACTCCTGACCTTCCCCATCGAG
TGCTTCGTGTCCCGCGAGATTGTGCGCGCCCTCGTCCATCGGTTCGTGCT
GAAGGAGCCCATCAGCGAGTTCACCCAGGACAAGGACCCCAGCCTGGAGA
AGGGGGCCATTATCGATGAGTACTCGAAAGCCATTACCATGGCCATCGTG
TTCAGCGCCTTCGTCATCTCGCCCATGACCGACTGCCTGGGTTCGGTGCT
GGAGCTGAATGGTCTCCTGGCGGCCATTCCCCTGGCCTACATCCTGCCCG
GCCTGGCCTACATTCAGATGGAGCCGCACGCCCTGCTCAGCCGGGAGAAG
CTGCCCGCTCTGGGCCTGGTGGTCTTCGGAGCCCTGGTGACCATCTTGGG
GGCGGCGGTGCTCCTGCCGGGTCTAATGGGCGGCGACTGCCGATCGGACA
TTGTGATGGGTTACTGCCGGCAGGAGTTTCAGAACACCACCTCCTCGAAC
GCAAGCTTTCTAGACCAT
BO11765.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:21:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13743-RA | 1587 | CG13743-PA | 1..1584 | 17..1600 | 7890 | 99.9 | Plus |
CG13743-RB | 1527 | CG13743-PB | 68..1524 | 144..1600 | 7255 | 99.9 | Plus |
CG13743-RC | 777 | CG13743-PC | 68..747 | 144..823 | 3370 | 99.7 | Plus |
CG13743-RB | 1527 | CG13743-PB | 1..69 | 17..85 | 345 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:22:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13743-RA | 3523 | CG13743-RA | 279..1864 | 15..1600 | 7900 | 99.9 | Plus |
CG13743-RB | 3463 | CG13743-RB | 348..1804 | 144..1600 | 7255 | 99.9 | Plus |
CG13743-RC | 3195 | CG13743-RC | 313..992 | 144..823 | 3370 | 99.7 | Plus |
CG13743-RB | 3463 | CG13743-RB | 279..349 | 15..85 | 355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:21:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9050841..9051153 | 456..144 | 1550 | 99.7 | Minus |
2R | 25286936 | 2R | 9049879..9050133 | 823..569 | 1275 | 100 | Minus |
2R | 25286936 | 2R | 9046509..9046748 | 1600..1361 | 1200 | 100 | Minus |
2R | 25286936 | 2R | 9047657..9047851 | 1361..1167 | 975 | 100 | Minus |
2R | 25286936 | 2R | 9048175..9048338 | 1056..893 | 820 | 100 | Minus |
2R | 25286936 | 2R | 9047914..9048028 | 1168..1054 | 575 | 100 | Minus |
2R | 25286936 | 2R | 9050515..9050630 | 569..454 | 565 | 99.1 | Minus |
2R | 25286936 | 2R | 9059254..9059325 | 86..15 | 360 | 100 | Minus |
2R | 25286936 | 2R | 9048467..9048537 | 893..823 | 355 | 100 | Minus |
2R | 25286936 | 2R | 9056573..9056636 | 145..82 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:21:57 has no hits.
BO11765.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:49:42 Download gff for
BO11765.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13743-RA | 1..1587 | 17..1604 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:52:24 Download gff for
BO11765.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13743-RA | 280..1863 | 17..1602 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:29:13 Download gff for
BO11765.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13743-RA | 281..1864 | 17..1602 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:49:42 Download gff for
BO11765.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13743-RA | 274..1869 | 10..1608 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:16:48 Download gff for
BO11765.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13743-RA | 281..1864 | 17..1602 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:16:48 Download gff for
BO11765.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9048176..9048337 | 894..1055 | 100 | <- | Minus |
2R | 9048467..9048537 | 823..893 | 100 | <- | Minus |
2R | 9049880..9050132 | 570..822 | 100 | <- | Minus |
2R | 9050515..9050629 | 455..569 | 99 | <- | Minus |
2R | 9050843..9051151 | 146..454 | 99 | <- | Minus |
2R | 9056573..9056632 | 86..145 | 100 | <- | Minus |
2R | 9059255..9059323 | 17..85 | 100 | | Minus |
2R | 9046507..9046748 | 1361..1602 | 99 | <- | Minus |
2R | 9047658..9047849 | 1169..1360 | 100 | <- | Minus |
2R | 9047914..9048026 | 1056..1168 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:29:13 Download gff for
BO11765.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4934012..4934253 | 1361..1602 | 99 | <- | Minus |
arm_2R | 4935163..4935354 | 1169..1360 | 100 | <- | Minus |
arm_2R | 4935419..4935531 | 1056..1168 | 100 | <- | Minus |
arm_2R | 4935681..4935842 | 894..1055 | 100 | <- | Minus |
arm_2R | 4935972..4936042 | 823..893 | 100 | <- | Minus |
arm_2R | 4937385..4937637 | 570..822 | 100 | <- | Minus |
arm_2R | 4938020..4938134 | 455..569 | 99 | <- | Minus |
arm_2R | 4938348..4938656 | 146..454 | 99 | <- | Minus |
arm_2R | 4944078..4944137 | 86..145 | 100 | <- | Minus |
arm_2R | 4946760..4946828 | 17..85 | 100 | | Minus |
BO11765.pep Sequence
Translation from 16 to 1618
> BO11765.pep
MNMNMNDSRRNTATEFSYILQRQGSDVSVAEAYAFDDFNNIMKNNHQTHQ
QQGQPQQPHQQQQQPPQQQQQQQHRQHSQQQQQAQQDAGLGDTLSSLPQA
SFNYINSIVGSGVIGIPYALHRAGFGLGLALLILVAYITDYSLILMVRCG
HICGRFSYPGIMEAAYGKYGYYLLSLLQFMYPFLAMISYNVVVGDTLSKV
LVRFFPSWGGSMGAVRLGVVFFVNVGVVMPLCLYKNVSRLARASFISLAC
VVFILFAVIIKLMSGDYKVTDTAESWRFANSDLIPATGIMVFAFMCHHNT
FLVYQSMRDATMERWEKVTHISIGFAWTVAALFGIAGYSTFRALSQGDLL
ENYCWDDDLMNFSRVLFSISILLTFPIECFVSREIVRALVHRFVLKEPIS
EFTQDKDPSLEKGAIIDEYSKAITMAIVFSAFVISPMTDCLGSVLELNGL
LAAIPLAYILPGLAYIQMEPHALLSREKLPALGLVVFGALVTILGAAVLL
PGLMGGDCRSDIVMGYCRQEFQNTTSSNASFLDH
BO11765.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:31:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13743-PA | 528 | CG13743-PA | 1..528 | 1..528 | 2725 | 100 | Plus |
CG13743-PB | 508 | CG13743-PB | 1..508 | 1..528 | 2592 | 96.2 | Plus |
CG13743-PC | 258 | CG13743-PC | 1..254 | 1..274 | 1262 | 91.2 | Plus |
CG30394-PB | 831 | CG30394-PB | 13..387 | 106..495 | 207 | 21.7 | Plus |
CG30394-PA | 831 | CG30394-PA | 13..387 | 106..495 | 207 | 21.7 | Plus |