Clone Sequence Records
BO11767.3prime Sequence
846 bp (781 high quality bases) assembled on 2006-04-19
> BO11767.3prime
ATGGTCTAGAAAGCTTGCGTAGAGATAATGCGAAGAGGCCTGAGCTCTAT
ACTGTTTCGGTGTTAGCTTGATCAGCTTGGGGTTGAATGCCCCCAGTGCC
GCCTCGTTGGTGGACGAGGGAGGCGGCGGGGCGGTGTGCGTCCGGAAGCG
CGACCTCAGGAAGTTCTGCATGGAGCGCAGGCGGATGATGGGCGCGCAGG
GAGATTGTCGAAGCGAATTGTGGTTGAGCGCCCAGTAGATCACCGGACTG
ATGGCCGAGTAGAAGTAGCCTAGCAGAAGGCTGAAGTAAACAGAGGTCTG
GCTGCACTGCTGATTGTTGCCGAAGTTCTTGTAGAAGATGCAGAAGACGT
GCGGTGCCCAGCAGGCAATGAAGATCACGGCCGAGGCGATGAGCATGTTA
GCCAGGTGCCTTCGCGACCGCAGCGTGGAGGTTTGGGGCAGTGGGATGCC
GGGTGTCGCTGGTCCCCTGCCTGCTCGGTTGATGCGCTGGCGCTGCGAGT
GGGCGCGAATCTCCCTCATGGCCCTGGGTGATATGGGATTGCTAGAGCGG
TAGGAGCCCGGTTCGAGGGCCGATCCGGCAGAGCCTGGCTGGCGCGGCTG
CAGTGTGTGAAGCTGTATGTCGCCCGGACTGACGGCCATGGGACCGCCAC
CGGTGCCCGTGCCGTTCCCGTTCGAGGTGTCGTCCGCCGTGGTGCCCCCA
CCACAGGCCGCTTGCTGGGCGTTGGGGCAGCCCGTCACAATGACCATGTG
GGTCTGGCGTCGCAGGATGGGAATGGGCAGCGGCAGCTCTCCATGGGCAG
CTCGAGCCGTTAGCGACAGGGCGCAAAGCTTGCGTCGGACGCCGTA
BO11767.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:30:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13995-PA | 1638 | CG13995-RA | 808..1635 | 846..19 | 4115 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:23:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13995-RA | 3379 | CG13995-RA | 1390..2217 | 846..19 | 4125 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:23:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6057925..6058248 | 846..523 | 1605 | 99.7 | Minus |
2L | 23513712 | 2L | 6058426..6058682 | 525..269 | 1285 | 100 | Minus |
2L | 23513712 | 2L | 6058755..6059007 | 271..19 | 1265 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 12:23:32 has no hits.
BO11767.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:16:10 Download gff for
BO11767.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13995-PA | 809..1638 | 18..845 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:43:39 Download gff for
BO11767.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13995-PA | 809..1638 | 18..845 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 23:27:20 Download gff for
BO11767.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13995-RA | 1391..2217 | 19..845 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:41:16 Download gff for
BO11767.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13995-RA | 1391..2217 | 19..845 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:41:16 Download gff for
BO11767.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6057926..6058247 | 524..845 | 99 | -> | Minus |
2L | 6058428..6058681 | 270..523 | 100 | -> | Minus |
2L | 6058757..6059007 | 19..269 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 23:27:20 Download gff for
BO11767.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6057926..6058247 | 524..845 | 99 | -> | Minus |
arm_2L | 6058428..6058681 | 270..523 | 100 | -> | Minus |
arm_2L | 6058757..6059007 | 19..269 | 100 | | Minus |
BO11767.5prime Sequence
950 bp (868 high quality bases) assembled on 2006-04-19
> BO11767.5prime
GAAGTTATCAGTCGACATGAACAGGGACAATCTGCAGCAGTGGTGGGAGA
ACTCGTATCGGCGCCAACATCCAGAGCCCACCGATGACCTCGGCCTGGAC
TCCGCGGAGCTGCATCTCGCCCTCCAGGAGCCCAACCAGCTGCCCGCGGA
CTACGACTATGGCAACTTTAGTCTAGGCAATCCGTATGACGTGGACTCAG
AGCACTCCATTTCCCCGCTGACGCTGCTCCTGCTCGCTGTTAGCTATGGC
CTGGTGGTTTTCGGCGGCGTCGTGGGCAACTCCACGCTCGTTCTGACCCT
CTGCTCCGCCTCTTCGGTGCGTTTGCGTAACCCGCTGCTGCTGGCCGTCT
GCATTGCCGATCTCCTGGTCACCGGCATCTCCGCTCCGGTCACGCTCCTC
AATCTCGCGATGAACCGGAGGACGCGATCGCTGCCCCTTGTGCTGTGCAA
GGTCATACACTACGTACAGGTCATGCCCGTTTCGGCCAGCACTATTTCGT
TTTTCATGCTCTCCCTTGACCGCTACGCCACAGTAAAGCATCCGCGATTG
GCGCAGCTTCGCCAGCGGCGCTACTTGCACGTCTCCCTGGCGCTGCTATC
CTGGCTCGCCTCTGCCGCCATCAGCACTCCCTTTCTGTTTGCCTACAAAA
TCATCGCCAAGTCGATGGTGGTCAAGGGCGGTGGGGCGGCGAACACCACG
CCAAACCCGGTCAGCATCAGCTGCACCTCCGACCTGGGCGCCAACGCCAT
GTTCATGTCCTTCATCATCTTCCACACCATCGCCGTGTTCGTGTTGCCTG
GCATTGGTGTGCTACTCAACCACTACGGCGTCCGACGCAAGCTCTGCGCC
CTGTCGCTAACGGCTCGAGCTGCCCATGGAGAGCTGCCGCTGCCCATTCC
ATCCTGCGACGCCGACCCACATGGCCATTGGGACGGCTGCCCCAACGCCC
BO11767.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:30:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13995-PA | 1638 | CG13995-RA | 1..884 | 17..900 | 4420 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 05:27:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13995-RA | 3379 | CG13995-RA | 582..1519 | 16..950 | 4585 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 05:26:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6057053..6057508 | 16..471 | 2280 | 100 | Plus |
2L | 23513712 | 2L | 6057568..6058054 | 467..950 | 2255 | 99 | Plus |
Blast to na_te.dros performed on 2015-02-04 05:27:00 has no hits.
BO11767.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:16:11 Download gff for
BO11767.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13995-PA | 1..937 | 17..950 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:43:40 Download gff for
BO11767.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13995-PA | 1..937 | 17..950 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 07:13:14 Download gff for
BO11767.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13995-RA | 582..1519 | 16..950 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:45:20 Download gff for
BO11767.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13995-RA | 582..1519 | 16..950 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:45:20 Download gff for
BO11767.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6057053..6057506 | 16..469 | 100 | -> | Plus |
2L | 6057571..6058054 | 470..950 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 07:13:14 Download gff for
BO11767.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6057053..6057506 | 16..469 | 100 | -> | Plus |
arm_2L | 6057571..6058054 | 470..950 | 98 | | Plus |
BO11767.complete Sequence
1669 bp assembled on 2007-06-22
GenBank Submission: FJ632188
> BO11767.complete
GAAGTTATCAGTCGACATGAACAGGGACAATCTGCAGCAGTGGTGGGAGA
ACTCGTATCGGCGCCAACATCCAGAGCCCACCGATGACCTCGGCCTGGAC
TCCGCGGAGCTGCATCTCGCCCTCCAGGAGCCCAACCAGCTGCCCGCGGA
CTACGACTATGGCAACTTTAGTCTAGGCAATCCGTATGACGTGGACTCAG
AGCACTCCATTTCCCCGCTGACGCTGCTCCTGCTCGCTGTTAGCTATGGC
CTGGTGGTTTTCGGCGGCGTCGTGGGCAACTCCACGCTCGTTCTGACCCT
CTGCTCCGCCTCTTCGGTGCGTTTGCGTAACCCGCTGCTGCTGGCCGTCT
GCATTGCCGATCTCCTGGTCACCGGCATCTCCGCTCCGGTCACGCTCCTC
AATCTCGCGATGAACCGGAGGACGCGATCGCTGCCCCTTGTGCTGTGCAA
GGTCATACACTACGTACAGGTCATGCCCGTTTCGGCCAGCACTATTTCGT
TTTTCATGCTCTCCCTTGACCGCTACGCCACAGTAAAGCATCCGCGATTG
GCGCAGCTTCGCCAGCGGCGCTACTTGCACGTCTCCCTGGCGCTGCTATC
CTGGCTCGCCTCTGCCGCCATCAGCACTCCCTTTCTGTTTGCCTACAAAA
TCATCGCCAAGTCGATGGTGGTCAAGGGCGGTGGGGCGGCGAACACCACG
CCAAACCCGGTCAGCATCAGCTGCACCTCCGACCTGGGCGCCAACGCCAT
GTTCATGTCCTTCATCATCTTCCACACCATCGCCGTGTTCGTGTTGCCTG
GCATTGGTGTGCTACTCAACCACTACGGCGTCCGACGCAAGCTCTGCGCC
CTGTCGCTAACGGCTCGAGCTGCCCATGGAGAGCTGCCGCTGCCCATTCC
CATCCTGCGACGCCAGACCCACATGGTCATTGTGACGGGCTGCCCCAACG
CCCAGCAAGCGGCCTGTGGTGGGGGCACCACGGCGGACGACACCTCGAAC
GGGAACGGCACGGGCACCGGTGGCGGTCCCATGGCCGTCAGTCCGGGCGA
CATACAGCTTCACACACTGCAGCCGCGCCAGCCAGGCTCTGCCGGATCGG
CCCTCGAACCGGGCTCCTACCGCTCTAGCAATCCCATATCACCCAGGGCC
ATGAGGGAGATTCGCGCCCACTCGCAGCGCCAGCGCATCAACCGAGCAGG
CAGGGGACCAGCGACACCCGGCATCCCACTGCCCCAAACCTCCACGCTGC
GGTCGCGAAGGCACCTGGCTAACATGCTCATCGCCTCGGCCGTGATCTTC
ATTGCCTGCTGGGCACCGCACGTCTTCTGCATCTTCTACAAGAACTTCGG
CAACAATCAGCAGTGCAGCCAGACCTCTGTTTACTTCAGCCTTCTGCTAG
GCTACTTCTACTCGGCCATCAGTCCGGTGATCTACTGGGCGCTCAACCAC
AATTCGCTTCGACAATCTCCCTGCGCGCCCATCATCCGCCTGCGCTCCAT
GCAGAACTTCCTGAGGTCGCGCTTCCGGACGCACACCGCCCCGCCGCCTC
CCTCGTCCACCAACGAGGCGGCACTGGGGGCATTCAACCCCAAGCTGATC
AAGCTAACACCGAAACAGTATAGAGCTCAGGCCTCTTCGCATTATCTCTA
CGCAAGCTTTCTAGACCAT
BO11767.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:42:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13995-RA | 1638 | CG13995-PA | 1..1635 | 17..1651 | 8175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:42:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13995-RA | 3379 | CG13995-RA | 582..2217 | 16..1651 | 8180 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:42:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6057568..6058248 | 467..1147 | 3405 | 100 | Plus |
2L | 23513712 | 2L | 6057053..6057508 | 16..471 | 2280 | 100 | Plus |
2L | 23513712 | 2L | 6058426..6058682 | 1145..1401 | 1285 | 100 | Plus |
2L | 23513712 | 2L | 6058755..6059007 | 1399..1651 | 1265 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:42:02 has no hits.
BO11767.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:08:30 Download gff for
BO11767.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13995-RA | 1..1638 | 17..1652 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:25:13 Download gff for
BO11767.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13995-RA | 577..2212 | 16..1651 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:15 Download gff for
BO11767.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13995-RA | 583..2217 | 17..1653 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:08:30 Download gff for
BO11767.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13995-RA | 577..2212 | 16..1651 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:06:38 Download gff for
BO11767.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13995-RA | 583..2217 | 17..1653 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:06:38 Download gff for
BO11767.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6057054..6057506 | 17..469 | 100 | -> | Plus |
2L | 6057571..6058247 | 470..1146 | 100 | -> | Plus |
2L | 6058428..6058681 | 1147..1400 | 100 | -> | Plus |
2L | 6058757..6059007 | 1401..1653 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:15 Download gff for
BO11767.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6057054..6057506 | 17..469 | 100 | -> | Plus |
arm_2L | 6057571..6058247 | 470..1146 | 100 | -> | Plus |
arm_2L | 6058428..6058681 | 1147..1400 | 100 | -> | Plus |
arm_2L | 6058757..6059007 | 1401..1653 | 99 | | Plus |
BO11767.pep Sequence
Translation from 16 to 1669
> BO11767.pep
MNRDNLQQWWENSYRRQHPEPTDDLGLDSAELHLALQEPNQLPADYDYGN
FSLGNPYDVDSEHSISPLTLLLLAVSYGLVVFGGVVGNSTLVLTLCSASS
VRLRNPLLLAVCIADLLVTGISAPVTLLNLAMNRRTRSLPLVLCKVIHYV
QVMPVSASTISFFMLSLDRYATVKHPRLAQLRQRRYLHVSLALLSWLASA
AISTPFLFAYKIIAKSMVVKGGGAANTTPNPVSISCTSDLGANAMFMSFI
IFHTIAVFVLPGIGVLLNHYGVRRKLCALSLTARAAHGELPLPIPILRRQ
THMVIVTGCPNAQQAACGGGTTADDTSNGNGTGTGGGPMAVSPGDIQLHT
LQPRQPGSAGSALEPGSYRSSNPISPRAMREIRAHSQRQRINRAGRGPAT
PGIPLPQTSTLRSRRHLANMLIASAVIFIACWAPHVFCIFYKNFGNNQQC
SQTSVYFSLLLGYFYSAISPVIYWALNHNSLRQSPCAPIIRLRSMQNFLR
SRFRTHTAPPPPSSTNEAALGAFNPKLIKLTPKQYRAQASSHYLYASFLD
H
BO11767.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:21:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13995-PA | 545 | CG13995-PA | 1..545 | 1..545 | 2832 | 100 | Plus |
5-HT7-PB | 564 | CG12073-PB | 154..547 | 62..513 | 193 | 22.8 | Plus |
5-HT7-PA | 564 | CG12073-PA | 154..547 | 62..513 | 193 | 22.8 | Plus |
NPFR-PC | 462 | CG1147-PC | 88..288 | 72..276 | 158 | 23.9 | Plus |
NPFR-PB | 466 | CG1147-PB | 88..288 | 72..276 | 158 | 23.9 | Plus |