Clone BO11771 Report

Search the DGRC for BO11771

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:117
Well:71
Vector:pDNR-Dual
Associated Gene/TranscriptCpr97Eb-RA
Protein status:BO11771.pep: validated full length
Sequenced Size:739

Clone Sequence Records

BO11771.5prime Sequence

737 bp (736 high quality bases) assembled on 2006-04-19

> BO11771.5prime
GAAGTTATCAGTCGACATGTTGAAATTGACCTTGAGCTTGGGTCTTCTGC
TTCTGGCGGCCCACAGTGCGTATGCGCAACACCAGGACTACACCACACCG
GTGCCCATTCTCAAGCAGATCGACAAGCACAACGACGATGGTTCCTACAC
ATATGGATACGAAGCGGCCGATAAGAGCTTCAAGATCGAAACCAAGTACG
CGAATGGAGAGGTCTATGGAAAGTACGGTTATGTGGATGACCAGGGAAAA
GTGCGGGAAATAGAGTATGGAGCCAGTAAGCGTGGCTTTGAGCCCGCTGG
CAGTCACATCAATGTGCCACCACCTACGCTGACCAACAGCAATCCCTATC
CATTGGGACCCAACGAATTGGACGATGGCCAGTATCGTGAGGACCCCTCG
GTGTACTACAAGGACCAGAAGTTCAATCGCCCCCTTTCACCGGCCAGTAA
ATTCAGTCTGAACGATTTCGGCCGCGGCCAGCAGCAGGCGTATGCCCCGC
CACCTCGGCAGCCCGCCCCACAAACGCCCTACTACAATCCCACACCCCAA
TACTACAATCCCCCGGCTCCGCAGCCCCGTTACTACCAGCCTCCGGCCCA
GAACTACTATAATCCCCAGCAGCAACAGCCATACAGGGGGTTGCCGGAGC
AACATCATCCCTCCCTGCGAAATCTCAACCTCTACACCGGTTCCTATAGC
ATCGACTATACGGGCCGGAAGGCAAGCTTTCTAGACC

BO11771.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:30:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG15884-PA 708 CG15884-RA 1..705 17..721 3525 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:58:39
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr97Eb-RA 1054 CG15884-RA 139..844 16..721 3530 100 Plus
Cpr97Ea-RB 1502 CG6131-RB 436..614 110..288 235 76.1 Plus
Cpr97Ea-RA 1514 CG6131-RA 448..626 110..288 235 76.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:58:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27089914..27090607 721..28 3470 100 Minus
Blast to na_te.dros performed on 2015-02-12 10:58:36 has no hits.

BO11771.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:16:19 Download gff for BO11771.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15884-PA 1..708 17..722 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:43:51 Download gff for BO11771.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15884-PA 1..708 17..722 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:27:15 Download gff for BO11771.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr97Eb-RA 139..844 16..721 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:13:22 Download gff for BO11771.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr97Eb-RA 139..844 16..721 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:13:22 Download gff for BO11771.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 27089914..27090606 29..721 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:27:15 Download gff for BO11771.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22915636..22916328 29..721 100 <- Minus

BO11771.3prime Sequence

204 bp (203 high quality bases) assembled on 2006-04-19

> BO11771.3prime
ATGGTCTAGAAAGCTTGCCTTCCGGCCCGTATAGTCGATGCTATAGGAAC
CGGTGTAGAGGTTGAGATTTCGCAGGGAGGGATGATGTTGCTCCGGCAAC
CCCCTGTATGGCTGTTGCTGCTGGGGATTATAGTAGTTCTGGGCCGGAGG
CTGGTAGTAACGGGGCTGCGGAGCCGGGGGATTGTAGTATTGGGGTGTGG
GATT

BO11771.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:30:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG15884-PA 708 CG15884-RA 520..705 204..19 930 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:20:57
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr97Eb-RA 1054 CG15884-RA 659..844 204..19 930 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:20:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27089914..27090099 19..204 930 100 Plus
Blast to na_te.dros performed 2015-02-10 20:20:56
Subject Length Description Subject Range Query Range Score Percent Strand
G3 4605 G3 G3 4605bp 1585..1643 124..66 106 64.4 Minus

BO11771.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:16:18 Download gff for BO11771.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15884-PA 520..708 18..204 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:43:50 Download gff for BO11771.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15884-PA 520..708 18..204 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 20:37:47 Download gff for BO11771.3prime
Subject Subject Range Query Range Percent Splice Strand
Cpr97Eb-RA 659..844 19..204 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:13:30 Download gff for BO11771.3prime
Subject Subject Range Query Range Percent Splice Strand
Cpr97Eb-RA 659..844 19..204 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:13:30 Download gff for BO11771.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 27089914..27090099 19..204 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 20:37:47 Download gff for BO11771.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22915636..22915821 19..204 100   Plus

BO11771.complete Sequence

739 bp assembled on 2006-10-11

GenBank Submission: FJ632189

> BO11771.complete
GAAGTTATCAGTCGACATGTTGAAATTGACCTTGAGCTTGGGTCTTCTGC
TTCTGGCGGCCCACAGTGCGTATGCGCAACACCAGGACTACACCACACCG
GTGCCCATTCTCAAGCAGATCGACAAGCACAACGACGATGGTTCCTACAC
ATATGGATACGAAGCGGCCGATAAGAGCTTCAAGATCGAAACCAAGTACG
CGAATGGAGAGGTCTATGGAAAGTACGGTTATGTGGATGACCAGGGAAAA
GTGCGGGAAATAGAGTATGGAGCCAGTAAGCGTGGCTTTGAGCCCGCTGG
CAGTCACATCAATGTGCCACCACCTACGCTGACCAACAGCAATCCCTATC
CATTGGGACCCAACGAATTGGACGATGGCCAGTATCGTGAGGACCCCTCG
GTGTACTACAAGGACCAGAAGTTCAATCGCCCCCTTTCACCGGCCAGTAA
ATTCAGTCTGAACGATTTCGGCCGCGGCCAGCAGCAGGCGTATGCCCCGC
CACCTCGGCAGCCCGCCCCACAAACGCCCTACTACAATCCCACACCCCAA
TACTACAATCCCCCGGCTCCGCAGCCCCGTTACTACCAGCCTCCGGCCCA
GAACTACTATAATCCCCAGCAGCAACAGCCATACAGGGGGTTGCCGGAGC
AACATCATCCCTCCCTGCGAAATCTCAACCTCTACACCGGTTCCTATAGC
ATCGACTATACGGGCCGGAAGGCAAGCTTTCTAGACCAT

BO11771.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:11:10
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr97Eb-RA 708 CG15884-PA 1..705 17..721 3525 100 Plus
Cpr97Ea-RB 1092 CG6131-PB 169..347 110..288 235 75.4 Plus
Cpr97Ea-RA 1101 CG6131-PA 178..356 110..288 235 75.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:11:12
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr97Eb-RA 1054 CG15884-RA 139..844 16..721 3530 100 Plus
Cpr97Ea-RB 1502 CG6131-RB 436..614 110..288 235 75.4 Plus
Cpr97Ea-RA 1514 CG6131-RA 448..626 110..288 235 75.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:11:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27089914..27090607 721..28 3470 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:11:10 has no hits.

BO11771.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:49:45 Download gff for BO11771.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr97Eb-RA 1..708 17..722 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:04:49 Download gff for BO11771.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr97Eb-RA 132..837 16..721 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:49:17 Download gff for BO11771.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr97Eb-RA 145..844 22..723 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:49:45 Download gff for BO11771.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr97Eb-RA 132..837 16..721 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:08:04 Download gff for BO11771.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr97Eb-RA 145..844 22..723 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:08:04 Download gff for BO11771.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27089912..27090610 22..723 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:49:17 Download gff for BO11771.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22915634..22916332 22..723 99   Minus

BO11771.pep Sequence

Translation from 16 to 739

> BO11771.pep
MLKLTLSLGLLLLAAHSAYAQHQDYTTPVPILKQIDKHNDDGSYTYGYEA
ADKSFKIETKYANGEVYGKYGYVDDQGKVREIEYGASKRGFEPAGSHINV
PPPTLTNSNPYPLGPNELDDGQYREDPSVYYKDQKFNRPLSPASKFSLND
FGRGQQQAYAPPPRQPAPQTPYYNPTPQYYNPPAPQPRYYQPPAQNYYNP
QQQQPYRGLPEQHHPSLRNLNLYTGSYSIDYTGRKASFLDH

BO11771.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:30:54
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr97Eb-PA 235 CG15884-PA 1..235 1..235 1297 100 Plus
Cpr97Ea-PB 363 CG6131-PB 35..212 11..214 352 43.9 Plus
Cpr97Ea-PA 366 CG6131-PA 38..215 11..214 352 43.9 Plus
Cpr100A-PA 241 CG12045-PA 10..221 12..210 227 33.6 Plus