Clone Sequence Records
BO11771.5prime Sequence
737 bp (736 high quality bases) assembled on 2006-04-19
> BO11771.5prime
GAAGTTATCAGTCGACATGTTGAAATTGACCTTGAGCTTGGGTCTTCTGC
TTCTGGCGGCCCACAGTGCGTATGCGCAACACCAGGACTACACCACACCG
GTGCCCATTCTCAAGCAGATCGACAAGCACAACGACGATGGTTCCTACAC
ATATGGATACGAAGCGGCCGATAAGAGCTTCAAGATCGAAACCAAGTACG
CGAATGGAGAGGTCTATGGAAAGTACGGTTATGTGGATGACCAGGGAAAA
GTGCGGGAAATAGAGTATGGAGCCAGTAAGCGTGGCTTTGAGCCCGCTGG
CAGTCACATCAATGTGCCACCACCTACGCTGACCAACAGCAATCCCTATC
CATTGGGACCCAACGAATTGGACGATGGCCAGTATCGTGAGGACCCCTCG
GTGTACTACAAGGACCAGAAGTTCAATCGCCCCCTTTCACCGGCCAGTAA
ATTCAGTCTGAACGATTTCGGCCGCGGCCAGCAGCAGGCGTATGCCCCGC
CACCTCGGCAGCCCGCCCCACAAACGCCCTACTACAATCCCACACCCCAA
TACTACAATCCCCCGGCTCCGCAGCCCCGTTACTACCAGCCTCCGGCCCA
GAACTACTATAATCCCCAGCAGCAACAGCCATACAGGGGGTTGCCGGAGC
AACATCATCCCTCCCTGCGAAATCTCAACCTCTACACCGGTTCCTATAGC
ATCGACTATACGGGCCGGAAGGCAAGCTTTCTAGACC
BO11771.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:30:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15884-PA | 708 | CG15884-RA | 1..705 | 17..721 | 3525 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:58:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr97Eb-RA | 1054 | CG15884-RA | 139..844 | 16..721 | 3530 | 100 | Plus |
Cpr97Ea-RB | 1502 | CG6131-RB | 436..614 | 110..288 | 235 | 76.1 | Plus |
Cpr97Ea-RA | 1514 | CG6131-RA | 448..626 | 110..288 | 235 | 76.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:58:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27089914..27090607 | 721..28 | 3470 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:58:36 has no hits.
BO11771.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:16:19 Download gff for
BO11771.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15884-PA | 1..708 | 17..722 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:43:51 Download gff for
BO11771.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15884-PA | 1..708 | 17..722 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:27:15 Download gff for
BO11771.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr97Eb-RA | 139..844 | 16..721 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:13:22 Download gff for
BO11771.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr97Eb-RA | 139..844 | 16..721 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:13:22 Download gff for
BO11771.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27089914..27090606 | 29..721 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:27:15 Download gff for
BO11771.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22915636..22916328 | 29..721 | 100 | <- | Minus |
BO11771.3prime Sequence
204 bp (203 high quality bases) assembled on 2006-04-19
> BO11771.3prime
ATGGTCTAGAAAGCTTGCCTTCCGGCCCGTATAGTCGATGCTATAGGAAC
CGGTGTAGAGGTTGAGATTTCGCAGGGAGGGATGATGTTGCTCCGGCAAC
CCCCTGTATGGCTGTTGCTGCTGGGGATTATAGTAGTTCTGGGCCGGAGG
CTGGTAGTAACGGGGCTGCGGAGCCGGGGGATTGTAGTATTGGGGTGTGG
GATT
BO11771.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:30:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15884-PA | 708 | CG15884-RA | 520..705 | 204..19 | 930 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:20:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr97Eb-RA | 1054 | CG15884-RA | 659..844 | 204..19 | 930 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:20:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27089914..27090099 | 19..204 | 930 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 20:20:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G3 | 4605 | G3 G3 4605bp | 1585..1643 | 124..66 | 106 | 64.4 | Minus |
BO11771.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:16:18 Download gff for
BO11771.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15884-PA | 520..708 | 18..204 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:43:50 Download gff for
BO11771.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15884-PA | 520..708 | 18..204 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 20:37:47 Download gff for
BO11771.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr97Eb-RA | 659..844 | 19..204 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:13:30 Download gff for
BO11771.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr97Eb-RA | 659..844 | 19..204 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:13:30 Download gff for
BO11771.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27089914..27090099 | 19..204 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 20:37:47 Download gff for
BO11771.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22915636..22915821 | 19..204 | 100 | | Plus |
BO11771.complete Sequence
739 bp assembled on 2006-10-11
GenBank Submission: FJ632189
> BO11771.complete
GAAGTTATCAGTCGACATGTTGAAATTGACCTTGAGCTTGGGTCTTCTGC
TTCTGGCGGCCCACAGTGCGTATGCGCAACACCAGGACTACACCACACCG
GTGCCCATTCTCAAGCAGATCGACAAGCACAACGACGATGGTTCCTACAC
ATATGGATACGAAGCGGCCGATAAGAGCTTCAAGATCGAAACCAAGTACG
CGAATGGAGAGGTCTATGGAAAGTACGGTTATGTGGATGACCAGGGAAAA
GTGCGGGAAATAGAGTATGGAGCCAGTAAGCGTGGCTTTGAGCCCGCTGG
CAGTCACATCAATGTGCCACCACCTACGCTGACCAACAGCAATCCCTATC
CATTGGGACCCAACGAATTGGACGATGGCCAGTATCGTGAGGACCCCTCG
GTGTACTACAAGGACCAGAAGTTCAATCGCCCCCTTTCACCGGCCAGTAA
ATTCAGTCTGAACGATTTCGGCCGCGGCCAGCAGCAGGCGTATGCCCCGC
CACCTCGGCAGCCCGCCCCACAAACGCCCTACTACAATCCCACACCCCAA
TACTACAATCCCCCGGCTCCGCAGCCCCGTTACTACCAGCCTCCGGCCCA
GAACTACTATAATCCCCAGCAGCAACAGCCATACAGGGGGTTGCCGGAGC
AACATCATCCCTCCCTGCGAAATCTCAACCTCTACACCGGTTCCTATAGC
ATCGACTATACGGGCCGGAAGGCAAGCTTTCTAGACCAT
BO11771.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:11:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr97Eb-RA | 708 | CG15884-PA | 1..705 | 17..721 | 3525 | 100 | Plus |
Cpr97Ea-RB | 1092 | CG6131-PB | 169..347 | 110..288 | 235 | 75.4 | Plus |
Cpr97Ea-RA | 1101 | CG6131-PA | 178..356 | 110..288 | 235 | 75.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:11:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr97Eb-RA | 1054 | CG15884-RA | 139..844 | 16..721 | 3530 | 100 | Plus |
Cpr97Ea-RB | 1502 | CG6131-RB | 436..614 | 110..288 | 235 | 75.4 | Plus |
Cpr97Ea-RA | 1514 | CG6131-RA | 448..626 | 110..288 | 235 | 75.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:11:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27089914..27090607 | 721..28 | 3470 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:11:10 has no hits.
BO11771.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:49:45 Download gff for
BO11771.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr97Eb-RA | 1..708 | 17..722 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:04:49 Download gff for
BO11771.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr97Eb-RA | 132..837 | 16..721 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:49:17 Download gff for
BO11771.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr97Eb-RA | 145..844 | 22..723 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:49:45 Download gff for
BO11771.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr97Eb-RA | 132..837 | 16..721 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:08:04 Download gff for
BO11771.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr97Eb-RA | 145..844 | 22..723 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:08:04 Download gff for
BO11771.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27089912..27090610 | 22..723 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:49:17 Download gff for
BO11771.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22915634..22916332 | 22..723 | 99 | | Minus |
BO11771.pep Sequence
Translation from 16 to 739
> BO11771.pep
MLKLTLSLGLLLLAAHSAYAQHQDYTTPVPILKQIDKHNDDGSYTYGYEA
ADKSFKIETKYANGEVYGKYGYVDDQGKVREIEYGASKRGFEPAGSHINV
PPPTLTNSNPYPLGPNELDDGQYREDPSVYYKDQKFNRPLSPASKFSLND
FGRGQQQAYAPPPRQPAPQTPYYNPTPQYYNPPAPQPRYYQPPAQNYYNP
QQQQPYRGLPEQHHPSLRNLNLYTGSYSIDYTGRKASFLDH
BO11771.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:30:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr97Eb-PA | 235 | CG15884-PA | 1..235 | 1..235 | 1297 | 100 | Plus |
Cpr97Ea-PB | 363 | CG6131-PB | 35..212 | 11..214 | 352 | 43.9 | Plus |
Cpr97Ea-PA | 366 | CG6131-PA | 38..215 | 11..214 | 352 | 43.9 | Plus |
Cpr100A-PA | 241 | CG12045-PA | 10..221 | 12..210 | 227 | 33.6 | Plus |