Clone BO11772 Report

Search the DGRC for BO11772

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:117
Well:72
Vector:pDNR-Dual
Associated Gene/TranscriptCG2310-RA
Protein status:BO11772.pep: validated full length
Sequenced Size:787

Clone Sequence Records

BO11772.3prime Sequence

785 bp (784 high quality bases) assembled on 2006-04-19

> BO11772.3prime
ATGGTCTAGAAAGCTTGCGACCCTGGCGGCCTTCGTGCGCCGCAGCTGGA
CGACATTGATCACGCAGACGAGCAGCCATGCGAGCAGTGCGATCCAGGCA
AAGACCAGGGTGAAGTACAGGCAGGCGGCCGTATTGATGCGCCCGTAGCG
TCGCCGCTCGTACGACACGCTCTCCACCAGATAGTCCATGAAGTCGAAGA
CGGCGGCGCACGAGAGCCGCGACTTGATCACGGGCACAATGTTGCCCACG
CCCTGGATCTCCTTCAGCAGCGACTCCCTGTACTGCTTGCAAGTCACCTC
GAAGCCATCCGTGAACACGGCCGAGTAGACCAGTTGGTAGACGGCCATTA
TTGTCGAGATGACGGTGGCGGGCAGCCAGTAGTAGGGCGAGAGACCATCG
GGCGTGAGTTCCGACTCGGTGGTCACCACGATCATGTCACCGGAGCGCTG
ACGGATGGTGGCCGTGCCCGCCTTGGGCTTGCCCCGACCGATGCACATGC
GGTAGCCGTGGTAGACGCCCAGGACGACGGCGAAGAGCAGCGGCAGCAGC
AGGCCGTAGGTGGCGAAGTGGCAGTAGGCGACGTTGCCGCCCTCGAAGCT
GTGGAACGTGCTCTTGCCGTGCAGCACGCAGCCGCAATTGGTGTCCGGGC
AGGCATTGAGCACGTACTGCCAGTGTGTCCAGGCCACCGCCGAGGTGATG
CAGCAGACCAGCGATGAAACGATGGCCAGCGGGTAGAGTAGGGACAGGGC
TCGCTCCGCGTAGTACGACATGTCGACTGATAACT

BO11772.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:30:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG2310-PA 756 CG2310-RA 1..753 771..19 3765 100 Minus
CG2310-PB 756 CG2310-RB 1..753 771..19 3765 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:20:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG2310-RB 1279 CG2310-RB 300..1052 771..19 3765 100 Minus
CG2310-RA 1083 CG2310-RA 104..856 771..19 3765 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:20:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29491751..29492109 19..377 1795 100 Plus
3R 32079331 3R 29492396..29492721 446..771 1630 100 Plus
3R 32079331 3R 29492170..29492239 377..446 350 100 Plus
Blast to na_te.dros performed on 2015-02-10 20:20:49 has no hits.

BO11772.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:16:20 Download gff for BO11772.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2310-PB 1..756 16..771 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:43:52 Download gff for BO11772.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2310-PB 1..756 16..771 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 20:37:43 Download gff for BO11772.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2310-RA 88..856 19..785 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:13:08 Download gff for BO11772.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2310-RA 88..856 19..785 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:13:08 Download gff for BO11772.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 29491751..29492109 19..377 100 <- Plus
3R 29492171..29492238 378..445 100 <- Plus
3R 29492396..29492737 446..785 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 20:37:43 Download gff for BO11772.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25317473..25317831 19..377 100 <- Plus
arm_3R 25317893..25317960 378..445 100 <- Plus
arm_3R 25318118..25318459 446..785 98   Plus

BO11772.5prime Sequence

785 bp (754 high quality bases) assembled on 2006-04-19

> BO11772.5prime
GAAGTTATCAGTCGACATGTCGTACTACGCGGAGCGAGCCCTGTCCCTAC
TCTACCCGCTGGCCATCGTTTCATCGCTGGTCTGCTGCATCACCTCGGCG
GTGGCCTGGACACACTGGCAGTACGTGCTCAATGCCTGCCCGGACACCAA
TTGCGGCTGCGTGCTGCACGGCAAGAGCACGTTCCACAGCTTCGAGGGCG
GCAACGTCGCCTACTGCCACTTCGCCACCTACGGCCTGCTGCTGCCGCTG
CTCTTCGCCGTCGTCCTGGGCGTCTACCACGGCTACCGCATGTGCATCGG
TCGGGGCAAGCCCAAGGCGGGCACGGCCACCATCCGTCAGCGCTCCGGTG
ACATGATCGTGGTGACCACCGAGTCGGAACTCACGCCCGATGGTCTCTCG
CCCTACTACTGGCTGCCCGCCACCGTCATCTCGACAATAATGGCCGTCTA
CCAACTGGTCTACTCGGCCGTGTTCACGGATGGCTTCGAGGTGACTTGCA
AGCAGTACAGGGAGTCGCTGCTGAAGGAGATCCAGGGCGTGGGCAACATT
GTGCCCGTGATCAAGTCGCGGCTCTCGTGCGCCGCCGTCTTCGACTTCAT
GGACTATCTGGTGGAGAGCGTGTCGTACGAGCGGCGACGCTACGGGCGCA
TCAATACGGCCGCCTGCCTGTACTTCACCCTGGTCTTTGCCTGGATCGCA
CTGCTCGCATGGCTGCTCGTCTGCGTGATCAATGTCGTCCAGCTGCGGCG
CACGAAGGCCGCCAGGGTCGCAAGCTTTCTAGACC

BO11772.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:30:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG2310-PA 756 CG2310-RA 1..753 17..769 3765 100 Plus
CG2310-PB 756 CG2310-RB 1..753 17..769 3765 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:05:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG2310-RB 1279 CG2310-RB 300..1052 17..769 3765 100 Plus
CG2310-RA 1083 CG2310-RA 104..856 17..769 3765 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:05:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29491751..29492109 769..411 1795 100 Minus
3R 32079331 3R 29492396..29492721 342..17 1630 100 Minus
3R 32079331 3R 29492170..29492239 411..342 350 100 Minus
Blast to na_te.dros performed on 2015-02-12 20:05:45 has no hits.

BO11772.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:16:21 Download gff for BO11772.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2310-PB 1..756 17..772 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:43:54 Download gff for BO11772.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2310-PB 1..756 17..772 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 11:55:07 Download gff for BO11772.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2310-RA 88..856 3..769 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:41:32 Download gff for BO11772.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2310-RA 88..856 3..769 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:41:32 Download gff for BO11772.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 29491751..29492109 411..769 100 <- Minus
3R 29492171..29492238 343..410 100 <- Minus
3R 29492396..29492737 3..342 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 11:55:07 Download gff for BO11772.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25317473..25317831 411..769 100 <- Minus
arm_3R 25317893..25317960 343..410 100 <- Minus
arm_3R 25318118..25318459 3..342 98   Minus

BO11772.complete Sequence

787 bp assembled on 2006-10-11

GenBank Submission: FJ632190

> BO11772.complete
GAAGTTATCAGTCGACATGTCGTACTACGCGGAGCGAGCCCTGTCCCTAC
TCTACCCGCTGGCCATCGTTTCATCGCTGGTCTGCTGCATCACCTCGGCG
GTGGCCTGGACACACTGGCAGTACGTGCTCAATGCCTGCCCGGACACCAA
TTGCGGCTGCGTGCTGCACGGCAAGAGCACGTTCCACAGCTTCGAGGGCG
GCAACGTCGCCTACTGCCACTTCGCCACCTACGGCCTGCTGCTGCCGCTG
CTCTTCGCCGTCGTCCTGGGCGTCTACCACGGCTACCGCATGTGCATCGG
TCGGGGCAAGCCCAAGGCGGGCACGGCCACCATCCGTCAGCGCTCCGGTG
ACATGATCGTGGTGACCACCGAGTCGGAACTCACGCCCGATGGTCTCTCG
CCCTACTACTGGCTGCCCGCCACCGTCATCTCGACAATAATGGCCGTCTA
CCAACTGGTCTACTCGGCCGTGTTCACGGATGGCTTCGAGGTGACTTGCA
AGCAGTACAGGGAGTCGCTGCTGAAGGAGATCCAGGGCGTGGGCAACATT
GTGCCCGTGATCAAGTCGCGGCTCTCGTGCGCCGCCGTCTTCGACTTCAT
GGACTATCTGGTGGAGAGCGTGTCGTACGAGCGGCGACGCTACGGGCGCA
TCAATACGGCCGCCTGCCTGTACTTCACCCTGGTCTTTGCCTGGATCGCA
CTGCTCGCATGGCTGCTCGTCTGCGTGATCAATGTCGTCCAGCTGCGGCG
CACGAAGGCCGCCAGGGTCGCAAGCTTTCTAGACCAT

BO11772.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:56:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG2310-RB 756 CG2310-PB 1..753 17..769 3765 100 Plus
CG2310-RA 756 CG2310-PA 1..753 17..769 3765 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:56:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG2310-RB 1279 CG2310-RB 300..1052 17..769 3765 100 Plus
CG2310-RA 1083 CG2310-RA 104..856 17..769 3765 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:56:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29491751..29492109 769..411 1795 100 Minus
3R 32079331 3R 29492396..29492721 342..17 1630 100 Minus
3R 32079331 3R 29492170..29492239 411..342 350 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:56:20 has no hits.

BO11772.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:49:46 Download gff for BO11772.complete
Subject Subject Range Query Range Percent Splice Strand
CG2310-RB 1..756 17..772 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:04:51 Download gff for BO11772.complete
Subject Subject Range Query Range Percent Splice Strand
CG2310-RB 262..1030 3..769 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:34:43 Download gff for BO11772.complete
Subject Subject Range Query Range Percent Splice Strand
CG2310-RA 104..856 17..771 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:49:46 Download gff for BO11772.complete
Subject Subject Range Query Range Percent Splice Strand
CG2310-RB 262..1030 3..769 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:40:48 Download gff for BO11772.complete
Subject Subject Range Query Range Percent Splice Strand
CG2310-RA 104..856 17..771 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:40:48 Download gff for BO11772.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29491748..29492109 411..771 99 <- Minus
3R 29492171..29492238 343..410 100 <- Minus
3R 29492396..29492721 17..342 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:34:43 Download gff for BO11772.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25317470..25317831 411..771 99 <- Minus
arm_3R 25317893..25317960 343..410 100 <- Minus
arm_3R 25318118..25318443 17..342 100   Minus

BO11772.pep Sequence

Translation from 16 to 787

> BO11772.pep
MSYYAERALSLLYPLAIVSSLVCCITSAVAWTHWQYVLNACPDTNCGCVL
HGKSTFHSFEGGNVAYCHFATYGLLLPLLFAVVLGVYHGYRMCIGRGKPK
AGTATIRQRSGDMIVVTTESELTPDGLSPYYWLPATVISTIMAVYQLVYS
AVFTDGFEVTCKQYRESLLKEIQGVGNIVPVIKSRLSCAAVFDFMDYLVE
SVSYERRRYGRINTAACLYFTLVFAWIALLAWLLVCVINVVQLRRTKAAR
VASFLDH

BO11772.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:30:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG2310-PB 251 CG2310-PB 1..251 1..251 1323 100 Plus
CG2310-PA 251 CG2310-PA 1..251 1..251 1323 100 Plus