Clone Sequence Records
BO11772.3prime Sequence
785 bp (784 high quality bases) assembled on 2006-04-19
> BO11772.3prime
ATGGTCTAGAAAGCTTGCGACCCTGGCGGCCTTCGTGCGCCGCAGCTGGA
CGACATTGATCACGCAGACGAGCAGCCATGCGAGCAGTGCGATCCAGGCA
AAGACCAGGGTGAAGTACAGGCAGGCGGCCGTATTGATGCGCCCGTAGCG
TCGCCGCTCGTACGACACGCTCTCCACCAGATAGTCCATGAAGTCGAAGA
CGGCGGCGCACGAGAGCCGCGACTTGATCACGGGCACAATGTTGCCCACG
CCCTGGATCTCCTTCAGCAGCGACTCCCTGTACTGCTTGCAAGTCACCTC
GAAGCCATCCGTGAACACGGCCGAGTAGACCAGTTGGTAGACGGCCATTA
TTGTCGAGATGACGGTGGCGGGCAGCCAGTAGTAGGGCGAGAGACCATCG
GGCGTGAGTTCCGACTCGGTGGTCACCACGATCATGTCACCGGAGCGCTG
ACGGATGGTGGCCGTGCCCGCCTTGGGCTTGCCCCGACCGATGCACATGC
GGTAGCCGTGGTAGACGCCCAGGACGACGGCGAAGAGCAGCGGCAGCAGC
AGGCCGTAGGTGGCGAAGTGGCAGTAGGCGACGTTGCCGCCCTCGAAGCT
GTGGAACGTGCTCTTGCCGTGCAGCACGCAGCCGCAATTGGTGTCCGGGC
AGGCATTGAGCACGTACTGCCAGTGTGTCCAGGCCACCGCCGAGGTGATG
CAGCAGACCAGCGATGAAACGATGGCCAGCGGGTAGAGTAGGGACAGGGC
TCGCTCCGCGTAGTACGACATGTCGACTGATAACT
BO11772.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:30:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2310-PA | 756 | CG2310-RA | 1..753 | 771..19 | 3765 | 100 | Minus |
CG2310-PB | 756 | CG2310-RB | 1..753 | 771..19 | 3765 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:20:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2310-RB | 1279 | CG2310-RB | 300..1052 | 771..19 | 3765 | 100 | Minus |
CG2310-RA | 1083 | CG2310-RA | 104..856 | 771..19 | 3765 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:20:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29491751..29492109 | 19..377 | 1795 | 100 | Plus |
3R | 32079331 | 3R | 29492396..29492721 | 446..771 | 1630 | 100 | Plus |
3R | 32079331 | 3R | 29492170..29492239 | 377..446 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:20:49 has no hits.
BO11772.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:16:20 Download gff for
BO11772.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2310-PB | 1..756 | 16..771 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:43:52 Download gff for
BO11772.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2310-PB | 1..756 | 16..771 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 20:37:43 Download gff for
BO11772.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2310-RA | 88..856 | 19..785 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:13:08 Download gff for
BO11772.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2310-RA | 88..856 | 19..785 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:13:08 Download gff for
BO11772.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29491751..29492109 | 19..377 | 100 | <- | Plus |
3R | 29492171..29492238 | 378..445 | 100 | <- | Plus |
3R | 29492396..29492737 | 446..785 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 20:37:43 Download gff for
BO11772.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25317473..25317831 | 19..377 | 100 | <- | Plus |
arm_3R | 25317893..25317960 | 378..445 | 100 | <- | Plus |
arm_3R | 25318118..25318459 | 446..785 | 98 | | Plus |
BO11772.5prime Sequence
785 bp (754 high quality bases) assembled on 2006-04-19
> BO11772.5prime
GAAGTTATCAGTCGACATGTCGTACTACGCGGAGCGAGCCCTGTCCCTAC
TCTACCCGCTGGCCATCGTTTCATCGCTGGTCTGCTGCATCACCTCGGCG
GTGGCCTGGACACACTGGCAGTACGTGCTCAATGCCTGCCCGGACACCAA
TTGCGGCTGCGTGCTGCACGGCAAGAGCACGTTCCACAGCTTCGAGGGCG
GCAACGTCGCCTACTGCCACTTCGCCACCTACGGCCTGCTGCTGCCGCTG
CTCTTCGCCGTCGTCCTGGGCGTCTACCACGGCTACCGCATGTGCATCGG
TCGGGGCAAGCCCAAGGCGGGCACGGCCACCATCCGTCAGCGCTCCGGTG
ACATGATCGTGGTGACCACCGAGTCGGAACTCACGCCCGATGGTCTCTCG
CCCTACTACTGGCTGCCCGCCACCGTCATCTCGACAATAATGGCCGTCTA
CCAACTGGTCTACTCGGCCGTGTTCACGGATGGCTTCGAGGTGACTTGCA
AGCAGTACAGGGAGTCGCTGCTGAAGGAGATCCAGGGCGTGGGCAACATT
GTGCCCGTGATCAAGTCGCGGCTCTCGTGCGCCGCCGTCTTCGACTTCAT
GGACTATCTGGTGGAGAGCGTGTCGTACGAGCGGCGACGCTACGGGCGCA
TCAATACGGCCGCCTGCCTGTACTTCACCCTGGTCTTTGCCTGGATCGCA
CTGCTCGCATGGCTGCTCGTCTGCGTGATCAATGTCGTCCAGCTGCGGCG
CACGAAGGCCGCCAGGGTCGCAAGCTTTCTAGACC
BO11772.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:30:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2310-PA | 756 | CG2310-RA | 1..753 | 17..769 | 3765 | 100 | Plus |
CG2310-PB | 756 | CG2310-RB | 1..753 | 17..769 | 3765 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:05:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2310-RB | 1279 | CG2310-RB | 300..1052 | 17..769 | 3765 | 100 | Plus |
CG2310-RA | 1083 | CG2310-RA | 104..856 | 17..769 | 3765 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:05:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29491751..29492109 | 769..411 | 1795 | 100 | Minus |
3R | 32079331 | 3R | 29492396..29492721 | 342..17 | 1630 | 100 | Minus |
3R | 32079331 | 3R | 29492170..29492239 | 411..342 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 20:05:45 has no hits.
BO11772.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:16:21 Download gff for
BO11772.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2310-PB | 1..756 | 17..772 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:43:54 Download gff for
BO11772.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2310-PB | 1..756 | 17..772 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 11:55:07 Download gff for
BO11772.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2310-RA | 88..856 | 3..769 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:41:32 Download gff for
BO11772.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2310-RA | 88..856 | 3..769 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:41:32 Download gff for
BO11772.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29491751..29492109 | 411..769 | 100 | <- | Minus |
3R | 29492171..29492238 | 343..410 | 100 | <- | Minus |
3R | 29492396..29492737 | 3..342 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 11:55:07 Download gff for
BO11772.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25317473..25317831 | 411..769 | 100 | <- | Minus |
arm_3R | 25317893..25317960 | 343..410 | 100 | <- | Minus |
arm_3R | 25318118..25318459 | 3..342 | 98 | | Minus |
BO11772.complete Sequence
787 bp assembled on 2006-10-11
GenBank Submission: FJ632190
> BO11772.complete
GAAGTTATCAGTCGACATGTCGTACTACGCGGAGCGAGCCCTGTCCCTAC
TCTACCCGCTGGCCATCGTTTCATCGCTGGTCTGCTGCATCACCTCGGCG
GTGGCCTGGACACACTGGCAGTACGTGCTCAATGCCTGCCCGGACACCAA
TTGCGGCTGCGTGCTGCACGGCAAGAGCACGTTCCACAGCTTCGAGGGCG
GCAACGTCGCCTACTGCCACTTCGCCACCTACGGCCTGCTGCTGCCGCTG
CTCTTCGCCGTCGTCCTGGGCGTCTACCACGGCTACCGCATGTGCATCGG
TCGGGGCAAGCCCAAGGCGGGCACGGCCACCATCCGTCAGCGCTCCGGTG
ACATGATCGTGGTGACCACCGAGTCGGAACTCACGCCCGATGGTCTCTCG
CCCTACTACTGGCTGCCCGCCACCGTCATCTCGACAATAATGGCCGTCTA
CCAACTGGTCTACTCGGCCGTGTTCACGGATGGCTTCGAGGTGACTTGCA
AGCAGTACAGGGAGTCGCTGCTGAAGGAGATCCAGGGCGTGGGCAACATT
GTGCCCGTGATCAAGTCGCGGCTCTCGTGCGCCGCCGTCTTCGACTTCAT
GGACTATCTGGTGGAGAGCGTGTCGTACGAGCGGCGACGCTACGGGCGCA
TCAATACGGCCGCCTGCCTGTACTTCACCCTGGTCTTTGCCTGGATCGCA
CTGCTCGCATGGCTGCTCGTCTGCGTGATCAATGTCGTCCAGCTGCGGCG
CACGAAGGCCGCCAGGGTCGCAAGCTTTCTAGACCAT
BO11772.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:56:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2310-RB | 756 | CG2310-PB | 1..753 | 17..769 | 3765 | 100 | Plus |
CG2310-RA | 756 | CG2310-PA | 1..753 | 17..769 | 3765 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:56:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2310-RB | 1279 | CG2310-RB | 300..1052 | 17..769 | 3765 | 100 | Plus |
CG2310-RA | 1083 | CG2310-RA | 104..856 | 17..769 | 3765 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:56:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29491751..29492109 | 769..411 | 1795 | 100 | Minus |
3R | 32079331 | 3R | 29492396..29492721 | 342..17 | 1630 | 100 | Minus |
3R | 32079331 | 3R | 29492170..29492239 | 411..342 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:56:20 has no hits.
BO11772.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:49:46 Download gff for
BO11772.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2310-RB | 1..756 | 17..772 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:04:51 Download gff for
BO11772.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2310-RB | 262..1030 | 3..769 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:34:43 Download gff for
BO11772.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2310-RA | 104..856 | 17..771 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:49:46 Download gff for
BO11772.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2310-RB | 262..1030 | 3..769 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:40:48 Download gff for
BO11772.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2310-RA | 104..856 | 17..771 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:40:48 Download gff for
BO11772.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29491748..29492109 | 411..771 | 99 | <- | Minus |
3R | 29492171..29492238 | 343..410 | 100 | <- | Minus |
3R | 29492396..29492721 | 17..342 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:34:43 Download gff for
BO11772.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25317470..25317831 | 411..771 | 99 | <- | Minus |
arm_3R | 25317893..25317960 | 343..410 | 100 | <- | Minus |
arm_3R | 25318118..25318443 | 17..342 | 100 | | Minus |
BO11772.pep Sequence
Translation from 16 to 787
> BO11772.pep
MSYYAERALSLLYPLAIVSSLVCCITSAVAWTHWQYVLNACPDTNCGCVL
HGKSTFHSFEGGNVAYCHFATYGLLLPLLFAVVLGVYHGYRMCIGRGKPK
AGTATIRQRSGDMIVVTTESELTPDGLSPYYWLPATVISTIMAVYQLVYS
AVFTDGFEVTCKQYRESLLKEIQGVGNIVPVIKSRLSCAAVFDFMDYLVE
SVSYERRRYGRINTAACLYFTLVFAWIALLAWLLVCVINVVQLRRTKAAR
VASFLDH
BO11772.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:30:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2310-PB | 251 | CG2310-PB | 1..251 | 1..251 | 1323 | 100 | Plus |
CG2310-PA | 251 | CG2310-PA | 1..251 | 1..251 | 1323 | 100 | Plus |