Clone Sequence Records
BO11773.3prime Sequence
509 bp (406 high quality bases) assembled on 2006-04-19
> BO11773.3prime
ATGGTCTAGAAAGCTTGCTTGCGTCTTAACATTATCCCACAAATGTTGCT
GGCTTTGGCTATTCAGATATCCAAATTTCCACTGTTGCTTATGGTTCTTC
GGATCACAGACACTCGAAGTAACCGGATTTAATTCCGGCTGGGCCTCCAA
GCAATGTCTGAAGTTTTGCTGTTGGCCGGAGATCACCTGATGGGTCTTGG
AGTCGAAGGACCAGAACTGATTTCCACTCTGACCATGGCACTGGTATATA
TGAACGTTTACTCCGTGATTGCGCACCTCCGAGCAATAGAATCCAGATCG
CAACTCCCTATGATTAGTTAGGCTCCAATACTGCTCTGGACTTGGGAATA
CGTGTTCCGAACTACAAGGAGCTAATTTGGGTTGACCATGACTAGGATCT
TTGCGATCCATGCAGAGTTTCGGTGATGATATACTTTGTAACACTCCCGA
AGCGGATTCTGCGGGATCTAATATGGGATATAGATTGAGGAAATCCGTTG
CGAGGTTAT
BO11773.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:30:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7297-PA | 1773 | pgant8-RA | 1280..1770 | 509..19 | 2205 | 97.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:20:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pgant8-RA | 2199 | CG7297-RA | 1377..1867 | 509..19 | 2305 | 98 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:20:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15685776..15686266 | 509..19 | 2305 | 98 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:20:10 has no hits.
BO11773.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:16:22 Download gff for
BO11773.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7297-PA | 1280..1773 | 18..509 | 97 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:43:55 Download gff for
BO11773.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7297-PA | 1280..1773 | 18..509 | 97 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 20:37:24 Download gff for
BO11773.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pgant8-RA | 1377..1867 | 19..509 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:11:19 Download gff for
BO11773.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pgant8-RA | 1377..1867 | 19..509 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:11:19 Download gff for
BO11773.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15685776..15686266 | 19..509 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 20:37:24 Download gff for
BO11773.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15678876..15679366 | 19..509 | 97 | | Minus |
BO11773.5prime Sequence
802 bp (769 high quality bases) assembled on 2006-04-19
> BO11773.5prime
GAAGTTATCAGTCGACATGTGCCTGGACATTTGGCGGCACAAGAAGAAGG
TGTTGCCGCTGCTACTGCTAATGGCCATCGGCAGTATTATCTACTATCTA
TATACCCTGAAATTGGAGGGGGAGCGTGATGAAAGTGCAACTTCGACAAC
TTCTCGCTTGGAGCGTGACATAAGAGATCTGCAAGCGGTCTTCGAGTCGG
AGGTCATACCGGATCTGGGAGCTTTGGGTCGCCCGGCAAGGGGTAATTGG
ACTGAGGAGCAGCTGGAGGCCATCGCCAAAAGTCAGCGGGAAACGGGTTA
CAATGCTTGGCTCTCCAAGCGCATCTCACCTGAGCGATCGCTCTACGATA
TGCGACATCGCAGCTGCAAAAAGCTCAAGTACCCGATGGAAAAGCTCCCA
TCAGTCAGTGTGGTGATAACGTATCACAATGAGGAGGCAAGCGTGCTGCT
TCGAACGCTTAGCAGCTTGAGGAGCCGAACTCCGATCCAGCTGCTTCGAG
AGGTTATCCTGGTGGACGACGGGAGCACCCAAGCGGACGAGAAGCTCAAC
GACTTCATTAAGATCAAGTTTCTAAATATGGTGCAGCACCGCAGGATCAC
AACCCAGGTGGGTCTGATGCATGCGAGAGTCGTGGGCGCGGAACTCGCCC
TGGCCGATGTCCTCGTCTTCCTAGACTCCCACGTGGAAGTCACCAAAGGC
TGGCTGGAGCCGCTCATTGCTCCCATTTTAGAGGACAACAGGACCTGCAC
TACTCCTATTATAGACACCATTGACTTTGATAACTTTGCCTACGAAGGGG
GG
BO11773.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:30:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7297-PA | 1773 | pgant8-RA | 1..777 | 17..793 | 3885 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:50:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pgant8-RA | 2199 | CG7297-RA | 98..883 | 17..801 | 3905 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:50:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15684749..15685181 | 361..793 | 2165 | 100 | Plus |
| 3L | 28110227 | 3L | 15683969..15684315 | 17..363 | 1735 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:50:51 has no hits.
BO11773.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:16:23 Download gff for
BO11773.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7297-PA | 1..786 | 17..802 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:43:56 Download gff for
BO11773.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7297-PA | 1..786 | 17..802 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 04:01:54 Download gff for
BO11773.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pgant8-RA | 98..883 | 17..802 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:28:13 Download gff for
BO11773.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pgant8-RA | 98..883 | 17..802 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:28:13 Download gff for
BO11773.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15683968..15684315 | 16..363 | 99 | -> | Plus |
| 3L | 15684752..15685190 | 364..802 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 04:01:54 Download gff for
BO11773.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15677068..15677415 | 16..363 | 99 | -> | Plus |
| arm_3L | 15677852..15678290 | 364..802 | 99 | | Plus |
BO11773.complete Sequence
1804 bp assembled on 2008-01-17
GenBank Submission: FJ632191
> BO11773.complete
GAAGTTATCAGTCGACATGTGCCTGGACATTTGGCGGCACAAGAAGAAGG
TGTTGCCGCTGCTACTGCTAATGGCCATCGGCAGTATTATCTACTATCTA
TATACCCTGAAATTGGAGGGGGAGCGTGATGAAAGTGCAACTTCGACAAC
TTCTCGCTTGGAGCGTGACATAAGAGATCTGCAAGCGGTCTTCGAGTCGG
AGGTCATACCGGATCTGGGAGCTTTGGGTCGCCCGGCAAGGGGTAATTGG
ACTGAGGAGCAGCTGGAGGCCATCGCCAAAAGTCAGCGGGAAACGGGTTA
CAATGCTTGGCTCTCCAAGCGCATCTCACCTGAGCGATCGCTCTACGATA
TGCGACATCGCAGCTGCAAAAAGCTCAAGTACCCGATGGAAAAGCTCCCA
TCAGTCAGTGTGGTGATAACGTATCACAATGAGGAGGCAAGCGTGCTGCT
TCGAACGCTTAGCAGCTTGAGGAGCCGAACTCCGATCCAGCTGCTTCGAG
AGGTTATCCTGGTGGACGACGGGAGCACCCAAGCGGACGAGAAGCTCAAC
GACTTCATTAAGATCAAGTTTCTAAATATGGTGCAGCACCGCAGGATCAC
AACCCAGGTGGGTCTGATGCATGCGAGAGTCGTGGGCGCGGAACTCGCCC
TGGCCGATGTCCTCGTCTTCCTAGACTCCCACGTGGAAGTCACCAAAGGC
TGGCTGGAGCCGCTCATTGCTCCCATTTTAGAGGACAACAGGACCTGCAC
TACTCCTATTATAGACACCATTGACTTTGATAACTTTGCCTACAGAAGGG
GGAAGCCGTCGAGGGGCTTCTTCAACTGGGAATTCAATTATATTCAGCTT
CCACTTCTCAAAGAGGAGGCGGTAGCCATGCCGGCTCCGCATAAGAATCC
CATAATGAATGGTGGCCTCTTTGCTATTGGACGTGAGTGGTTCTCTGAGC
TCGGTGGCTACGACAAGGGCTTGAAGATCTGGGGAGCCGAGCAGTTCGAG
CTGAGTCTTAAGCTGTGGTTGTGCGGAGGACAAATCCTAGAAGTTCCCTG
CTCTAGGGTTGGCCATCTCTTTAGAGACGGAAATTTCCAAATTCGCTATA
CCAACAAGGATAAAAATAGTGAGAAGAAATTAATTTCAAGGAACTACCGC
CGAGTCGCTGAGATTTGGTTAGATGAATATAAGGACAAGTTATTTGCCAA
CATGCCACATTTAACAGTGATTCCGGTGGGCAATCTTGCCGAGCAACGAG
ACCTTAAGAACCGCCTCCACTGCAAGCCTTTCAAGTGGTTTTTGGATAAC
CTCGCTACGGATTTCCTCAATCTATATCCCATATTAGATCCCGCAGAATA
CGCTTCGGGAGTGTTACAAAGTATATCATCACCGAAACTCTGCCTGGATC
GCAAAGATCCTAGTCATGGTCAACCCAAATTAGCTCCTTGTAGTTCGGAC
CACGTATTCCCAAGTCCAGAGCAGTATTGGAGCCTAACTAATCATAGGGA
GTTGCGATCTGGATTCTATTGCTTGGAGGTGCGCAATCACGGAGTAAACG
TTCATATATACCAGTGCCATGGTCAGAGTGGAAATCAGTTCTGGTCCTTC
GACTCCAAGACCCATCAGGTGATCTCCGGCCAACAGCAAAACTTCAGACA
TTGCCTGGAGGCCCAGCCGGAATTAAATGCGGTTACTTCGAGTGTCTGTG
ATCCGAAGAACCATAAGCAACAGTGGAAATTTGGATATCTGAATAGCCAA
AGACTGCAACATTTTTGGGATAATGTTAAGACGCAAGCAAGCTTTCTAGA
CCAT
BO11773.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:46:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pgant8-RA | 1773 | CG7297-PA | 1..1770 | 17..1786 | 8850 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:46:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pgant8-RA | 2199 | CG7297-RA | 98..1867 | 17..1786 | 8850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:46:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15684749..15685529 | 361..1141 | 3905 | 100 | Plus |
| 3L | 28110227 | 3L | 15685621..15686266 | 1141..1786 | 3230 | 100 | Plus |
| 3L | 28110227 | 3L | 15683969..15684315 | 17..363 | 1735 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:46:45 has no hits.
BO11773.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:59:02 Download gff for
BO11773.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pgant8-RA | 1..1773 | 17..1787 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:35:46 Download gff for
BO11773.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pgant8-RA | 95..1864 | 17..1788 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:24:39 Download gff for
BO11773.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pgant8-RA | 98..1867 | 17..1788 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:59:03 Download gff for
BO11773.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pgant8-RA | 95..1864 | 17..1786 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:55:46 Download gff for
BO11773.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pgant8-RA | 98..1867 | 17..1788 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:55:46 Download gff for
BO11773.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15683969..15684315 | 17..363 | 100 | -> | Plus |
| 3L | 15684752..15685529 | 364..1141 | 100 | -> | Plus |
| 3L | 15685622..15686266 | 1142..1788 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:24:39 Download gff for
BO11773.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15677069..15677415 | 17..363 | 100 | -> | Plus |
| arm_3L | 15677852..15678629 | 364..1141 | 100 | -> | Plus |
| arm_3L | 15678722..15679366 | 1142..1788 | 99 | | Plus |
BO11773.pep Sequence
Translation from 16 to 1804
> BO11773.pep
MCLDIWRHKKKVLPLLLLMAIGSIIYYLYTLKLEGERDESATSTTSRLER
DIRDLQAVFESEVIPDLGALGRPARGNWTEEQLEAIAKSQRETGYNAWLS
KRISPERSLYDMRHRSCKKLKYPMEKLPSVSVVITYHNEEASVLLRTLSS
LRSRTPIQLLREVILVDDGSTQADEKLNDFIKIKFLNMVQHRRITTQVGL
MHARVVGAELALADVLVFLDSHVEVTKGWLEPLIAPILEDNRTCTTPIID
TIDFDNFAYRRGKPSRGFFNWEFNYIQLPLLKEEAVAMPAPHKNPIMNGG
LFAIGREWFSELGGYDKGLKIWGAEQFELSLKLWLCGGQILEVPCSRVGH
LFRDGNFQIRYTNKDKNSEKKLISRNYRRVAEIWLDEYKDKLFANMPHLT
VIPVGNLAEQRDLKNRLHCKPFKWFLDNLATDFLNLYPILDPAEYASGVL
QSISSPKLCLDRKDPSHGQPKLAPCSSDHVFPSPEQYWSLTNHRELRSGF
YCLEVRNHGVNVHIYQCHGQSGNQFWSFDSKTHQVISGQQQNFRHCLEAQ
PELNAVTSSVCDPKNHKQQWKFGYLNSQRLQHFWDNVKTQASFLDH
BO11773.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:28:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pgant8-PA | 590 | CG7297-PA | 1..590 | 1..590 | 3150 | 100 | Plus |
| pgant4-PC | 644 | CG31956-PC | 130..644 | 77..588 | 1022 | 40 | Plus |
| pgant4-PB | 644 | CG31956-PB | 130..644 | 77..588 | 1022 | 40 | Plus |
| pgant6-PC | 666 | CG2103-PC | 155..658 | 80..583 | 1022 | 41.9 | Plus |
| pgant6-PB | 666 | CG2103-PB | 155..658 | 80..583 | 1022 | 41.9 | Plus |
