Clone Sequence Records
BO11774.3prime Sequence
817 bp (774 high quality bases) assembled on 2006-04-19
> BO11774.3prime
ATGGTCTAGAAAGCTTGCAGAAAGTTTTTGGTTTTTCAGTCTGTGCTCCA
TGGCCTCGATTCTCATTCGTTTAAAGAGTTGGTATCCGAAGTAAGTACGA
ATATCCATGGGAGCCAACTTCATGAAGGCGTACTGTAATCCATGAACCCA
GAAACCGTTGGTCTCGCTCGTCTTTCCCAGTGTAAAGACTGCGGACCGGG
CATAGGAATAAGCGTTGGGGAAAAGCAGTCCTCCTTGCCTCACTTTATCG
GAATAGGAATTCATATTGGTGGCCACAAAGGCTGGCATAACCAACTGCAC
ATGGATATTGTGTTCGGCCACCTCATATTCTAAACCTTTAGTAAAATGGG
TAACGAACTTCTTGGTAGCCGCATAAGCAGTCAAATTGGGATGGGGCTGG
AGTTCGGAGGAGGATCCGAGGTTAACAATTGCTCCCTTTCGACGACTAAT
CATCTGGGGCAGGATCTTGCGGGTGAGCATGGTAACCGATCCCACGTTGA
CGGTGAGAAGGTCCCACAACATGTCCTCCGATACCTTGTCAAGGCTTTCC
GGGTCGTGAATCGTGCCCACATTGTTGACCAAAATTCCAACTTCGATTCC
ATTCAGTTCCTTTTCGATATGAGCGTACACCTCGCGTCCCTTTGCAAAGT
CCGCAACAATCCACTTGATTTTCACATTATATTGGCTCCCAATCTCGTTG
GTGACTGCAATCAGCTTTTCCTCTTTCCGCGAAACGAGCACCAGGTTAAG
ACCCTGACGAGCCAACTCCCTGGCATATTCCTTTCCGATTCCATCGGTCG
CACCGGTCACCCCTGCC
BO11774.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:30:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31810-PA | 975 | CG31810-RA | 174..972 | 817..19 | 3970 | 99.8 | Minus |
CG31809-PA | 702 | CG31809-RA | 139..699 | 579..19 | 2630 | 98.7 | Minus |
CG31809-PA | 702 | CG31809-RA | 18..139 | 811..690 | 610 | 100 | Minus |
CG13284-PA | 978 | CG13284-RA | 482..599 | 512..395 | 315 | 90.6 | Minus |
CG13284-PB | 1020 | CG13284-RB | 524..641 | 512..395 | 315 | 90.6 | Minus |
CG13284-PA | 978 | CG13284-RA | 792..846 | 202..148 | 200 | 94.5 | Minus |
CG13284-PB | 1020 | CG13284-RB | 834..888 | 202..148 | 200 | 94.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:43:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31810-RA | 1138 | CG31810-RA | 210..1008 | 817..19 | 3980 | 99.9 | Minus |
CG31809-RC | 1186 | CG31809-RC | 259..1057 | 817..19 | 3875 | 99 | Minus |
CG31809-RB | 1338 | CG31809-RB | 411..1209 | 817..19 | 3875 | 99 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:43:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16849395..16849841 | 133..579 | 2235 | 100 | Plus |
2L | 23513712 | 2L | 16853953..16854399 | 133..579 | 2235 | 100 | Plus |
2L | 23513712 | 2L | 16843528..16843896 | 148..516 | 810 | 81.3 | Plus |
2L | 23513712 | 2L | 16850149..16850279 | 681..811 | 625 | 98.5 | Plus |
2L | 23513712 | 2L | 16854707..16854837 | 681..811 | 625 | 98.5 | Plus |
2L | 23513712 | 2L | 16849148..16849268 | 19..139 | 605 | 100 | Plus |
2L | 23513712 | 2L | 16849984..16850095 | 579..690 | 560 | 100 | Plus |
2L | 23513712 | 2L | 16854542..16854653 | 579..690 | 560 | 100 | Plus |
2L | 23513712 | 2L | 16853749..16853869 | 19..139 | 500 | 94.2 | Plus |
2L | 23513712 | 2L | 16844678..16844800 | 689..811 | 285 | 82.1 | Plus |
2L | 23513712 | 2L | 16844509..16844618 | 579..688 | 250 | 81.8 | Plus |
2L | 23513712 | 2L | 16843306..16843400 | 44..138 | 205 | 81.1 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:43:11 has no hits.
BO11774.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:16:24 Download gff for
BO11774.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31810-PA | 174..975 | 18..817 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:43:58 Download gff for
BO11774.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31810-PA | 174..975 | 18..817 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:28:16 Download gff for
BO11774.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31810-RA | 210..1014 | 11..817 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:00:48 Download gff for
BO11774.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31810-RA | 210..1014 | 11..817 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:00:48 Download gff for
BO11774.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16849395..16849840 | 133..578 | 100 | <- | Plus |
2L | 16849984..16850094 | 579..689 | 100 | <- | Plus |
2L | 16850158..16850282 | 690..817 | 96 | | Plus |
2L | 16849142..16849261 | 11..132 | 96 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:28:16 Download gff for
BO11774.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16849142..16849261 | 11..132 | 96 | <- | Plus |
arm_2L | 16849395..16849840 | 133..578 | 100 | <- | Plus |
arm_2L | 16849984..16850094 | 579..689 | 100 | <- | Plus |
arm_2L | 16850158..16850282 | 690..817 | 96 | | Plus |
BO11774.5prime Sequence
860 bp (823 high quality bases) assembled on 2006-04-19
> BO11774.5prime
GAAGTTATCAGTCGACATGGCTCTTATTTTGCAAGTGATTTCTACAGGAA
TCTACATAGTGGGTTCTCTTAGCATCGTCGCTTATCTCTACGAAAACTTA
AAGTCCTTGTTCAGCATTATCAAGTCTGTTGTGGAACCGTTCTTCAGGCC
GAATTTGCCAAAGACTTTGGCGGAGAAATTCGGAAATTGGGCAGTGGTGA
CCGGTGCGACCGATGGAATCGGAAAGGAATATGCCAGGGAGTTGGCTCGT
CAGGGTCTTAACCTGGTGCTCGTTTCGCGGAAAGAGGAAAAGCTGATTGC
AGTCACCAACGAGATTGGGAGCCAATATAATGTGAAAATCAAGTGGATTG
TTGCGGACTTTGCAAAGGGACGCGAGGTGTACGCTCATATCGAAAAGGAA
CTGAATGGAATCGAAGTTGGAATTTTGGTCAACAATGTGGGCACGATTCA
CGACCCGGAAAGCCTTGACAAGGTATCGGAGGACATGTTGTGGGACCTTC
TCACCGTCAACGTGGGATCGGTTACCATGCTCACCCGCAAGATCCTGCCC
CAGATGATTAGTCGTCGAAAGGGAGCAATTGTTAACCTCGGATCCTCCTC
CGAACTCCAGCCCCATCCCAATTTGACTGCTTATGCGGCTACCAAGAAGT
TCGTTACCCATTTTACTAAAGGTTTAGAATATGAGGTGGCCGAACACAAT
ATCCATGTGCAGTTGGTTATGCCAGCCTTTGTGGCCACCAATATGAATTC
CTATTCCGATAAAGTGAGGCAAGGAGGACTGCTTTTCCCCAACGCTTATT
CCTATGCCCGGTCCGCAGTCTTTAACACTGGGAAAGACGAGCGAGACCAA
CCGGTTCTGG
BO11774.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:30:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31810-PA | 975 | CG31810-RA | 1..808 | 17..824 | 4040 | 100 | Plus |
CG31809-PA | 702 | CG31809-RA | 139..535 | 428..824 | 1985 | 100 | Plus |
CG31809-PA | 702 | CG31809-RA | 17..139 | 195..317 | 615 | 100 | Plus |
CG13284-PA | 978 | CG13284-RA | 482..599 | 495..612 | 315 | 90.6 | Plus |
CG13284-PB | 1020 | CG13284-RB | 524..641 | 495..612 | 315 | 90.6 | Plus |
CG31810-PA | 975 | CG31810-RA | 808..834 | 825..851 | 135 | 100 | Plus |
CG31809-PA | 702 | CG31809-RA | 535..561 | 825..851 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:23:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31810-RA | 1138 | CG31810-RA | 35..879 | 15..860 | 4175 | 99.6 | Plus |
CG31809-RC | 1186 | CG31809-RC | 119..928 | 50..860 | 3955 | 99.3 | Plus |
CG31809-RB | 1338 | CG31809-RB | 271..1080 | 50..860 | 3955 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:23:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16849410..16849841 | 860..428 | 2085 | 99.3 | Minus |
2L | 23513712 | 2L | 16853968..16854399 | 860..428 | 2085 | 99.3 | Minus |
2L | 23513712 | 2L | 16852155..16852334 | 194..15 | 900 | 100 | Minus |
2L | 23513712 | 2L | 16843528..16843896 | 860..491 | 735 | 80.5 | Minus |
2L | 23513712 | 2L | 16858300..16858444 | 194..50 | 680 | 97.9 | Minus |
2L | 23513712 | 2L | 16850149..16850282 | 326..193 | 640 | 98.5 | Minus |
2L | 23513712 | 2L | 16854707..16854840 | 326..193 | 640 | 98.5 | Minus |
2L | 23513712 | 2L | 16849984..16850095 | 428..317 | 560 | 100 | Minus |
2L | 23513712 | 2L | 16854542..16854653 | 428..317 | 560 | 100 | Minus |
2L | 23513712 | 2L | 16844678..16844803 | 318..193 | 300 | 82.5 | Minus |
2L | 23513712 | 2L | 16844509..16844618 | 428..319 | 250 | 81.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 13:23:46 has no hits.
BO11774.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:16:25 Download gff for
BO11774.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31810-PA | 1..843 | 17..860 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:43:59 Download gff for
BO11774.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31810-PA | 1..843 | 17..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:26:26 Download gff for
BO11774.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31810-RA | 29..879 | 10..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:09:08 Download gff for
BO11774.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31810-RA | 29..879 | 10..860 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 17:09:08 Download gff for
BO11774.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16849410..16849840 | 429..860 | 99 | <- | Minus |
2L | 16849984..16850094 | 318..428 | 100 | <- | Minus |
2L | 16850158..16850280 | 195..317 | 100 | <- | Minus |
2L | 16852155..16852340 | 10..194 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:26:26 Download gff for
BO11774.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16849410..16849840 | 429..860 | 99 | <- | Minus |
arm_2L | 16849984..16850094 | 318..428 | 100 | <- | Minus |
arm_2L | 16850158..16850280 | 195..317 | 100 | <- | Minus |
arm_2L | 16852155..16852340 | 10..194 | 98 | | Minus |
BO11774.complete Sequence
1006 bp assembled on 2006-10-11
GenBank Submission: FJ632192
> BO11774.complete
GAAGTTATCAGTCGACATGGCTCTTATTTTGCAAGTGATTTCTACAGGAA
TCTACATAGTGGGTTCTCTTAGCATCGTCGCTTATCTCTACGAAAACTTA
AAGTCCTTGTTCAGCATTATCAAGTCTGTTGTGGAACCGTTCTTCAGGCC
GAATTTGCCAAAGACTTTGGCGGAGAAATTCGGAAATTGGGCAGTGGTGA
CCGGTGCGACCGATGGAATCGGAAAGGAATATGCCAGGGAGTTGGCTCGT
CAGGGTCTTAACCTGGTGCTCGTTTCGCGGAAAGAGGAAAAGCTGATTGC
AGTCACCAACGAGATTGGGAGCCAATATAATGTGAAAATCAAGTGGATTG
TTGCGGACTTTGCAAAGGGACGCGAGGTGTACGCTCATATCGAAAAGGAA
CTGAATGGAATCGAAGTTGGAATTTTGGTCAACAATGTGGGCACGATTCA
CGACCCGGAAAGCCTTGACAAGGTATCGGAGGACATGTTGTGGGACCTTC
TCACCGTCAACGTGGGATCGGTTACCATGCTCACCCGCAAGATCCTGCCC
CAGATGATTAGTCGTCGAAAGGGAGCAATTGTTAACCTCGGATCCTCCTC
CGAACTCCAGCCCCATCCCAATTTGACTGCTTATGCGGCTACCAAGAAGT
TCGTTACCCATTTTACTAAAGGTTTAGAATATGAGGTGGCCGAACACAAT
ATCCATGTGCAGTTGGTTATGCCAGCCTTTGTGGCCACCAATATGAATTC
CTATTCCGATAAAGTGAGGCAAGGAGGACTGCTTTTCCCCAACGCTTATT
CCTATGCCCGGTCCGCAGTCTTTACACTGGGAAAGACGAGCGAGACCAAC
GGTTTCTGGGTTCATGGATTACAGTACGCCTTCATGAAGTTGGCTCCCAT
GGATATTCGTACTTACTTCGGATACCAACTCTTTAAACGAATGAGAATCG
AGGCCATGGAGCACAGACTGAAAAACCAAAAACTTTCTGCAAGCTTTCTA
GACCAT
BO11774.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:56:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31810-RA | 975 | CG31810-PA | 1..972 | 17..988 | 4860 | 100 | Plus |
CG31809-RC | 951 | CG31809-PC | 10..948 | 50..988 | 4545 | 98.9 | Plus |
CG31809-RB | 951 | CG31809-PB | 10..948 | 50..988 | 4545 | 98.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:56:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31810-RA | 1138 | CG31810-RA | 35..1008 | 15..988 | 4870 | 100 | Plus |
CG31809-RC | 1186 | CG31809-RC | 119..1057 | 50..988 | 4545 | 98.9 | Plus |
CG31809-RB | 1338 | CG31809-RB | 271..1209 | 50..988 | 4545 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:56:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16849395..16849841 | 874..428 | 2235 | 100 | Minus |
2L | 23513712 | 2L | 16853953..16854399 | 874..428 | 2235 | 100 | Minus |
2L | 23513712 | 2L | 16852155..16852334 | 194..15 | 900 | 100 | Minus |
2L | 23513712 | 2L | 16843528..16843896 | 859..491 | 810 | 81.3 | Minus |
2L | 23513712 | 2L | 16858300..16858444 | 194..50 | 680 | 97.9 | Minus |
2L | 23513712 | 2L | 16850149..16850282 | 326..193 | 640 | 98.5 | Minus |
2L | 23513712 | 2L | 16854707..16854840 | 326..193 | 640 | 98.5 | Minus |
2L | 23513712 | 2L | 16849148..16849268 | 988..868 | 605 | 100 | Minus |
2L | 23513712 | 2L | 16849984..16850095 | 428..317 | 560 | 100 | Minus |
2L | 23513712 | 2L | 16854542..16854653 | 428..317 | 560 | 100 | Minus |
2L | 23513712 | 2L | 16853749..16853869 | 988..868 | 500 | 94.2 | Minus |
2L | 23513712 | 2L | 16844678..16844803 | 318..193 | 300 | 82.5 | Minus |
2L | 23513712 | 2L | 16844509..16844618 | 428..319 | 250 | 81.8 | Minus |
2L | 23513712 | 2L | 16843306..16843400 | 963..869 | 205 | 81.1 | Minus |
Blast to na_te.dros performed on 2014-11-27 19:56:42 has no hits.
BO11774.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:10:43 Download gff for
BO11774.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31810-RA | 1..975 | 17..989 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:28:34 Download gff for
BO11774.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31810-RA | 27..1012 | 10..996 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:04:44 Download gff for
BO11774.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31810-RA | 37..1008 | 17..990 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:10:44 Download gff for
BO11774.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31810-RA | 27..1012 | 10..996 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:11:19 Download gff for
BO11774.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31810-RA | 37..1008 | 17..990 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:11:19 Download gff for
BO11774.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16850158..16850280 | 195..317 | 100 | <- | Minus |
2L | 16852155..16852332 | 17..194 | 100 | | Minus |
2L | 16849146..16849261 | 875..990 | 98 | <- | Minus |
2L | 16849395..16849840 | 429..874 | 100 | <- | Minus |
2L | 16849984..16850094 | 318..428 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:04:44 Download gff for
BO11774.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16849146..16849261 | 875..990 | 98 | <- | Minus |
arm_2L | 16849395..16849840 | 429..874 | 100 | <- | Minus |
arm_2L | 16849984..16850094 | 318..428 | 100 | <- | Minus |
arm_2L | 16850158..16850280 | 195..317 | 100 | <- | Minus |
arm_2L | 16852155..16852332 | 17..194 | 100 | | Minus |
BO11774.pep Sequence
Translation from 16 to 1006
> BO11774.pep
MALILQVISTGIYIVGSLSIVAYLYENLKSLFSIIKSVVEPFFRPNLPKT
LAEKFGNWAVVTGATDGIGKEYARELARQGLNLVLVSRKEEKLIAVTNEI
GSQYNVKIKWIVADFAKGREVYAHIEKELNGIEVGILVNNVGTIHDPESL
DKVSEDMLWDLLTVNVGSVTMLTRKILPQMISRRKGAIVNLGSSSELQPH
PNLTAYAATKKFVTHFTKGLEYEVAEHNIHVQLVMPAFVATNMNSYSDKV
RQGGLLFPNAYSYARSAVFTLGKTSETNGFWVHGLQYAFMKLAPMDIRTY
FGYQLFKRMRIEAMEHRLKNQKLSASFLDH
BO11774.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:32:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31810-PA | 324 | CG31810-PA | 1..324 | 1..324 | 1648 | 100 | Plus |
CG31809-PC | 316 | CG31809-PC | 4..316 | 12..324 | 1566 | 98.1 | Plus |
CG31809-PB | 316 | CG31809-PB | 4..316 | 12..324 | 1566 | 98.1 | Plus |
CG13284-PE | 325 | CG13284-PE | 1..325 | 1..324 | 1281 | 76.3 | Plus |
CG13284-PA | 325 | CG13284-PA | 1..325 | 1..324 | 1281 | 76.3 | Plus |