Clone BO11777 Report

Search the DGRC for BO11777

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:117
Well:77
Vector:pDNR-Dual
Associated Gene/TranscriptmRpL22-RA
Protein status:BO11777.pep: validated full length
Sequenced Size:733

Clone Sequence Records

BO11777.3prime Sequence

731 bp (730 high quality bases) assembled on 2006-04-19

> BO11777.3prime
ATGGTCTAGAAAGCTTGCCAGCGAGTTGATGATCTTCCGGCTTCGCATCT
GCTCCATCCAGCTCTCGTACTGCTGCTCCGGCGTCTGCGGCTCCTGGTAG
TAGTGCTGCGGCGGCTCGCCCTCCTCCAGGCGCACGAAGTAGTGGCAGTG
CTTGTACTCCACTTTGCCGAAGCGACCGCGAGCATGCCGCCTCACGCCCT
TGAAGACGCGTCCCTTGCCCACGAAGGATTCGGCTATCCACAGATTGCTC
TTGTACTCCACGTTATGCCGCTCCACGGCTATTTGCTGGGCCTCCAGTAT
GGTCTCCTTCACATCGGTGGCCCCCTTTTTGAGCACAAAGTTCAGCTGCT
TCAGCGCCTCGTCGACGGACATTCCGCGAACAAAGGCAGCGATGTACCAC
ATCTTGTCCGGACTGTATTTGATGTTGCTGCGCATGTGGCAGACATAAGC
ATTTCTGGGCTCCTCGTCCGTTTCCTGCGGCGGATGCACGGTCTTGTTGT
ACTCCAGCCATTTGCGGGGTCCGTAGTTGTACTTGTTCCACTTGGCGCAC
AGCATTCCGGCGGAAGCGGCCGTGTGCAGGGATTTCGACTGGAGGGCAGG
TGGTGAAACTGGTGATATGGCTGGTGATATTGAGCTGCTATCCGCCGATC
GGAGGAGCGCTGCTCCCTGTGGCGCCTGCAGGCGCAGCTGGGACATTTGC
CGGATCACCTTGTGCATGTCGACTGATAACT

BO11777.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:30:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG4742-PA 702 mRpL22-RA 1..699 717..19 3495 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:55:43
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL22-RA 973 CG4742-RA 143..841 717..19 3495 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:55:41
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16784075..16784344 717..448 1350 100 Minus
X 23542271 X 16784744..16784960 235..19 1085 100 Minus
X 23542271 X 16784418..16784631 447..234 1070 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:55:42 has no hits.

BO11777.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:16:30 Download gff for BO11777.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4742-PA 1..702 18..717 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:44:06 Download gff for BO11777.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4742-PA 1..702 18..717 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 12:54:21 Download gff for BO11777.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpL22-RA 143..845 13..717 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:15:35 Download gff for BO11777.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpL22-RA 143..845 13..717 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:15:35 Download gff for BO11777.3prime
Subject Subject Range Query Range Percent Splice Strand
X 16784075..16784344 448..717 100 -> Minus
X 16784418..16784631 234..447 100 -> Minus
X 16784746..16784964 13..233 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 12:54:21 Download gff for BO11777.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16678108..16678377 448..717 100 -> Minus
arm_X 16678451..16678664 234..447 100 -> Minus
arm_X 16678779..16678997 13..233 98   Minus

BO11777.5prime Sequence

731 bp (730 high quality bases) assembled on 2006-04-19

> BO11777.5prime
GAAGTTATCAGTCGACATGCACAAGGTGATCCGGCAAATGTCCCAGCTGC
GCCTGCAGGCGCCACAGGGAGCAGCGCTCCTCCGATCGGCGGATAGCAGC
TCAATATCACCAGCCATATCACCAGTTTCACCACCTGCCCTCCAGTCGAA
ATCCCTGCACACGGCCGCTTCCGCCGGAATGCTGTGCGCCAAGTGGAACA
AGTACAACTACGGACCCCGCAAATGGCTGGAGTACAACAAGACCGTGCAT
CCGCCGCAGGAAACGGACGAGGAGCCCAGAAATGCTTATGTCTGCCACAT
GCGCAGCAACATCAAATACAGTCCGGACAAGATGTGGTACATCGCTGCCT
TTGTTCGCGGAATGTCCGTCGACGAGGCGCTGAAGCAGCTGAACTTTGTG
CTCAAAAAGGGGGCCACCGATGTGAAGGAGACCATACTGGAGGCCCAGCA
AATAGCCGTGGAGCGGCATAACGTGGAGTACAAGAGCAATCTGTGGATAG
CCGAATCCTTCGTGGGCAAGGGACGCGTCTTCAAGGGCGTGAGGCGGCAT
GCTCGCGGTCGCTTCGGCAAAGTGGAGTACAAGCACTGCCACTACTTCGT
GCGCCTGGAGGAGGGCGAGCCGCCGCAGCACTACTACCAGGAGCCGCAGA
CGCCGGAGCAGCAGTACGAGAGCTGGATGGAGCAGATGCGAAGCCGGAAG
ATCATCAACTCGCTGGCAAGCTTTCTAGACC

BO11777.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:30:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG4742-PA 702 mRpL22-RA 1..699 17..715 3495 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:06:17
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL22-RA 973 CG4742-RA 143..841 17..715 3495 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 07:06:10
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16784075..16784344 17..286 1350 100 Plus
X 23542271 X 16784744..16784960 499..715 1085 100 Plus
X 23542271 X 16784418..16784631 287..500 1070 100 Plus
Blast to na_te.dros performed on 2015-02-10 07:06:14 has no hits.

BO11777.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:16:31 Download gff for BO11777.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4742-PA 1..702 17..716 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:44:08 Download gff for BO11777.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4742-PA 1..702 17..716 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 09:28:48 Download gff for BO11777.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpL22-RA 143..845 17..721 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 10:46:40 Download gff for BO11777.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpL22-RA 143..845 17..721 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 10:46:40 Download gff for BO11777.5prime
Subject Subject Range Query Range Percent Splice Strand
X 16784075..16784344 17..286 100 -> Plus
X 16784418..16784631 287..500 100 -> Plus
X 16784746..16784964 501..721 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 09:28:48 Download gff for BO11777.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16678108..16678377 17..286 100 -> Plus
arm_X 16678451..16678664 287..500 100 -> Plus
arm_X 16678779..16678997 501..721 98   Plus

BO11777.complete Sequence

733 bp assembled on 2006-10-11

GenBank Submission: FJ632194

> BO11777.complete
GAAGTTATCAGTCGACATGCACAAGGTGATCCGGCAAATGTCCCAGCTGC
GCCTGCAGGCGCCACAGGGAGCAGCGCTCCTCCGATCGGCGGATAGCAGC
TCAATATCACCAGCCATATCACCAGTTTCACCACCTGCCCTCCAGTCGAA
ATCCCTGCACACGGCCGCTTCCGCCGGAATGCTGTGCGCCAAGTGGAACA
AGTACAACTACGGACCCCGCAAATGGCTGGAGTACAACAAGACCGTGCAT
CCGCCGCAGGAAACGGACGAGGAGCCCAGAAATGCTTATGTCTGCCACAT
GCGCAGCAACATCAAATACAGTCCGGACAAGATGTGGTACATCGCTGCCT
TTGTTCGCGGAATGTCCGTCGACGAGGCGCTGAAGCAGCTGAACTTTGTG
CTCAAAAAGGGGGCCACCGATGTGAAGGAGACCATACTGGAGGCCCAGCA
AATAGCCGTGGAGCGGCATAACGTGGAGTACAAGAGCAATCTGTGGATAG
CCGAATCCTTCGTGGGCAAGGGACGCGTCTTCAAGGGCGTGAGGCGGCAT
GCTCGCGGTCGCTTCGGCAAAGTGGAGTACAAGCACTGCCACTACTTCGT
GCGCCTGGAGGAGGGCGAGCCGCCGCAGCACTACTACCAGGAGCCGCAGA
CGCCGGAGCAGCAGTACGAGAGCTGGATGGAGCAGATGCGAAGCCGGAAG
ATCATCAACTCGCTGGCAAGCTTTCTAGACCAT

BO11777.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:58:00
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL22-RA 702 CG4742-PA 1..699 17..715 3495 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:58:01
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL22-RA 973 CG4742-RA 143..841 17..715 3495 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:57:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16784075..16784344 17..286 1350 100 Plus
X 23542271 X 16784744..16784960 499..715 1085 100 Plus
X 23542271 X 16784418..16784631 287..500 1070 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:57:58 has no hits.

BO11777.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:49:01 Download gff for BO11777.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL22-RA 1..702 17..716 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:03:56 Download gff for BO11777.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL22-RA 122..824 17..721 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:29:58 Download gff for BO11777.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL22-RA 143..841 17..717 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:49:01 Download gff for BO11777.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL22-RA 122..824 17..721 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:00:18 Download gff for BO11777.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL22-RA 143..841 17..717 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:00:18 Download gff for BO11777.complete
Subject Subject Range Query Range Percent Splice Strand
X 16784075..16784344 17..286 100 -> Plus
X 16784418..16784631 287..500 100 -> Plus
X 16784746..16784960 501..717 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:29:58 Download gff for BO11777.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16678108..16678377 17..286 100 -> Plus
arm_X 16678451..16678664 287..500 100 -> Plus
arm_X 16678779..16678993 501..717 99   Plus

BO11777.pep Sequence

Translation from 16 to 733

> BO11777.pep
MHKVIRQMSQLRLQAPQGAALLRSADSSSISPAISPVSPPALQSKSLHTA
ASAGMLCAKWNKYNYGPRKWLEYNKTVHPPQETDEEPRNAYVCHMRSNIK
YSPDKMWYIAAFVRGMSVDEALKQLNFVLKKGATDVKETILEAQQIAVER
HNVEYKSNLWIAESFVGKGRVFKGVRRHARGRFGKVEYKHCHYFVRLEEG
EPPQHYYQEPQTPEQQYESWMEQMRSRKIINSLASFLDH

BO11777.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:49:42
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL22-PA 233 CG4742-PA 1..233 1..233 1239 100 Plus