Clone Sequence Records
BO11777.3prime Sequence
731 bp (730 high quality bases) assembled on 2006-04-19
> BO11777.3prime
ATGGTCTAGAAAGCTTGCCAGCGAGTTGATGATCTTCCGGCTTCGCATCT
GCTCCATCCAGCTCTCGTACTGCTGCTCCGGCGTCTGCGGCTCCTGGTAG
TAGTGCTGCGGCGGCTCGCCCTCCTCCAGGCGCACGAAGTAGTGGCAGTG
CTTGTACTCCACTTTGCCGAAGCGACCGCGAGCATGCCGCCTCACGCCCT
TGAAGACGCGTCCCTTGCCCACGAAGGATTCGGCTATCCACAGATTGCTC
TTGTACTCCACGTTATGCCGCTCCACGGCTATTTGCTGGGCCTCCAGTAT
GGTCTCCTTCACATCGGTGGCCCCCTTTTTGAGCACAAAGTTCAGCTGCT
TCAGCGCCTCGTCGACGGACATTCCGCGAACAAAGGCAGCGATGTACCAC
ATCTTGTCCGGACTGTATTTGATGTTGCTGCGCATGTGGCAGACATAAGC
ATTTCTGGGCTCCTCGTCCGTTTCCTGCGGCGGATGCACGGTCTTGTTGT
ACTCCAGCCATTTGCGGGGTCCGTAGTTGTACTTGTTCCACTTGGCGCAC
AGCATTCCGGCGGAAGCGGCCGTGTGCAGGGATTTCGACTGGAGGGCAGG
TGGTGAAACTGGTGATATGGCTGGTGATATTGAGCTGCTATCCGCCGATC
GGAGGAGCGCTGCTCCCTGTGGCGCCTGCAGGCGCAGCTGGGACATTTGC
CGGATCACCTTGTGCATGTCGACTGATAACT
BO11777.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:30:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4742-PA | 702 | mRpL22-RA | 1..699 | 717..19 | 3495 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:55:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL22-RA | 973 | CG4742-RA | 143..841 | 717..19 | 3495 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:55:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16784075..16784344 | 717..448 | 1350 | 100 | Minus |
X | 23542271 | X | 16784744..16784960 | 235..19 | 1085 | 100 | Minus |
X | 23542271 | X | 16784418..16784631 | 447..234 | 1070 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:55:42 has no hits.
BO11777.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:16:30 Download gff for
BO11777.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4742-PA | 1..702 | 18..717 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:44:06 Download gff for
BO11777.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4742-PA | 1..702 | 18..717 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 12:54:21 Download gff for
BO11777.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL22-RA | 143..845 | 13..717 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:15:35 Download gff for
BO11777.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL22-RA | 143..845 | 13..717 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:15:35 Download gff for
BO11777.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16784075..16784344 | 448..717 | 100 | -> | Minus |
X | 16784418..16784631 | 234..447 | 100 | -> | Minus |
X | 16784746..16784964 | 13..233 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 12:54:21 Download gff for
BO11777.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16678108..16678377 | 448..717 | 100 | -> | Minus |
arm_X | 16678451..16678664 | 234..447 | 100 | -> | Minus |
arm_X | 16678779..16678997 | 13..233 | 98 | | Minus |
BO11777.5prime Sequence
731 bp (730 high quality bases) assembled on 2006-04-19
> BO11777.5prime
GAAGTTATCAGTCGACATGCACAAGGTGATCCGGCAAATGTCCCAGCTGC
GCCTGCAGGCGCCACAGGGAGCAGCGCTCCTCCGATCGGCGGATAGCAGC
TCAATATCACCAGCCATATCACCAGTTTCACCACCTGCCCTCCAGTCGAA
ATCCCTGCACACGGCCGCTTCCGCCGGAATGCTGTGCGCCAAGTGGAACA
AGTACAACTACGGACCCCGCAAATGGCTGGAGTACAACAAGACCGTGCAT
CCGCCGCAGGAAACGGACGAGGAGCCCAGAAATGCTTATGTCTGCCACAT
GCGCAGCAACATCAAATACAGTCCGGACAAGATGTGGTACATCGCTGCCT
TTGTTCGCGGAATGTCCGTCGACGAGGCGCTGAAGCAGCTGAACTTTGTG
CTCAAAAAGGGGGCCACCGATGTGAAGGAGACCATACTGGAGGCCCAGCA
AATAGCCGTGGAGCGGCATAACGTGGAGTACAAGAGCAATCTGTGGATAG
CCGAATCCTTCGTGGGCAAGGGACGCGTCTTCAAGGGCGTGAGGCGGCAT
GCTCGCGGTCGCTTCGGCAAAGTGGAGTACAAGCACTGCCACTACTTCGT
GCGCCTGGAGGAGGGCGAGCCGCCGCAGCACTACTACCAGGAGCCGCAGA
CGCCGGAGCAGCAGTACGAGAGCTGGATGGAGCAGATGCGAAGCCGGAAG
ATCATCAACTCGCTGGCAAGCTTTCTAGACC
BO11777.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:30:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4742-PA | 702 | mRpL22-RA | 1..699 | 17..715 | 3495 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:06:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL22-RA | 973 | CG4742-RA | 143..841 | 17..715 | 3495 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 07:06:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16784075..16784344 | 17..286 | 1350 | 100 | Plus |
X | 23542271 | X | 16784744..16784960 | 499..715 | 1085 | 100 | Plus |
X | 23542271 | X | 16784418..16784631 | 287..500 | 1070 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 07:06:14 has no hits.
BO11777.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:16:31 Download gff for
BO11777.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4742-PA | 1..702 | 17..716 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:44:08 Download gff for
BO11777.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4742-PA | 1..702 | 17..716 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 09:28:48 Download gff for
BO11777.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL22-RA | 143..845 | 17..721 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 10:46:40 Download gff for
BO11777.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL22-RA | 143..845 | 17..721 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 10:46:40 Download gff for
BO11777.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16784075..16784344 | 17..286 | 100 | -> | Plus |
X | 16784418..16784631 | 287..500 | 100 | -> | Plus |
X | 16784746..16784964 | 501..721 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 09:28:48 Download gff for
BO11777.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16678108..16678377 | 17..286 | 100 | -> | Plus |
arm_X | 16678451..16678664 | 287..500 | 100 | -> | Plus |
arm_X | 16678779..16678997 | 501..721 | 98 | | Plus |
BO11777.complete Sequence
733 bp assembled on 2006-10-11
GenBank Submission: FJ632194
> BO11777.complete
GAAGTTATCAGTCGACATGCACAAGGTGATCCGGCAAATGTCCCAGCTGC
GCCTGCAGGCGCCACAGGGAGCAGCGCTCCTCCGATCGGCGGATAGCAGC
TCAATATCACCAGCCATATCACCAGTTTCACCACCTGCCCTCCAGTCGAA
ATCCCTGCACACGGCCGCTTCCGCCGGAATGCTGTGCGCCAAGTGGAACA
AGTACAACTACGGACCCCGCAAATGGCTGGAGTACAACAAGACCGTGCAT
CCGCCGCAGGAAACGGACGAGGAGCCCAGAAATGCTTATGTCTGCCACAT
GCGCAGCAACATCAAATACAGTCCGGACAAGATGTGGTACATCGCTGCCT
TTGTTCGCGGAATGTCCGTCGACGAGGCGCTGAAGCAGCTGAACTTTGTG
CTCAAAAAGGGGGCCACCGATGTGAAGGAGACCATACTGGAGGCCCAGCA
AATAGCCGTGGAGCGGCATAACGTGGAGTACAAGAGCAATCTGTGGATAG
CCGAATCCTTCGTGGGCAAGGGACGCGTCTTCAAGGGCGTGAGGCGGCAT
GCTCGCGGTCGCTTCGGCAAAGTGGAGTACAAGCACTGCCACTACTTCGT
GCGCCTGGAGGAGGGCGAGCCGCCGCAGCACTACTACCAGGAGCCGCAGA
CGCCGGAGCAGCAGTACGAGAGCTGGATGGAGCAGATGCGAAGCCGGAAG
ATCATCAACTCGCTGGCAAGCTTTCTAGACCAT
BO11777.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:58:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL22-RA | 702 | CG4742-PA | 1..699 | 17..715 | 3495 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:58:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL22-RA | 973 | CG4742-RA | 143..841 | 17..715 | 3495 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:57:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16784075..16784344 | 17..286 | 1350 | 100 | Plus |
X | 23542271 | X | 16784744..16784960 | 499..715 | 1085 | 100 | Plus |
X | 23542271 | X | 16784418..16784631 | 287..500 | 1070 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:57:58 has no hits.
BO11777.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:49:01 Download gff for
BO11777.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL22-RA | 1..702 | 17..716 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:03:56 Download gff for
BO11777.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL22-RA | 122..824 | 17..721 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:29:58 Download gff for
BO11777.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL22-RA | 143..841 | 17..717 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:49:01 Download gff for
BO11777.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL22-RA | 122..824 | 17..721 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:00:18 Download gff for
BO11777.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL22-RA | 143..841 | 17..717 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:00:18 Download gff for
BO11777.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16784075..16784344 | 17..286 | 100 | -> | Plus |
X | 16784418..16784631 | 287..500 | 100 | -> | Plus |
X | 16784746..16784960 | 501..717 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:29:58 Download gff for
BO11777.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16678108..16678377 | 17..286 | 100 | -> | Plus |
arm_X | 16678451..16678664 | 287..500 | 100 | -> | Plus |
arm_X | 16678779..16678993 | 501..717 | 99 | | Plus |
BO11777.pep Sequence
Translation from 16 to 733
> BO11777.pep
MHKVIRQMSQLRLQAPQGAALLRSADSSSISPAISPVSPPALQSKSLHTA
ASAGMLCAKWNKYNYGPRKWLEYNKTVHPPQETDEEPRNAYVCHMRSNIK
YSPDKMWYIAAFVRGMSVDEALKQLNFVLKKGATDVKETILEAQQIAVER
HNVEYKSNLWIAESFVGKGRVFKGVRRHARGRFGKVEYKHCHYFVRLEEG
EPPQHYYQEPQTPEQQYESWMEQMRSRKIINSLASFLDH
BO11777.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:49:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL22-PA | 233 | CG4742-PA | 1..233 | 1..233 | 1239 | 100 | Plus |