Clone Sequence Records
BO11779.3prime Sequence
589 bp (581 high quality bases) assembled on 2006-04-19
> BO11779.3prime
ATGGTCTAGAAAGCTTGCATTCGGATTGAACTGGAAGAAGTCCACGTTGA
GATCGAGAATAGCCTCTGTGTTGGGCGTTTCCTTCATGGTCAGGGCCTCC
ACGGCATTATCGCTGGCATGATCGTAGCCATGGTTCACAGTCGGAGGAGC
AGTTGCCACTGGCGGCTGCATAAGATCGCTGACGTTTCTAAGCAGACTCT
CCTCGGAAGGCGGATGAAGTTGACCGCCCGCCGATAGATTGAGACGCTGT
GCAGCCTCGTCTGTGAGCGGATCGTCCAGCGACATGCTCAACTCTGCGTA
GACCACCAGATTGCGGGCTCCTTCACTACCGCTGCCGGCAACCAAGGCCG
CTCCCTCTGATTCCGGCATCGGTGCCAGCGGCGACTCCATGGCGGACATA
TCCAACGCATACTGACCCTCGGGTATGCCCAAAACTCGTGCAATTCGTGC
ATTTACAAAATGCAGTCCAGAGGTATTCCGTATAAGCCGTTGGCTGCGCA
ATTGCAGCTGCTCCACAAAGTCGTTAAGTTCGTTAAGAAAGAGATCAGAG
CGCTGTTCCTCGCTGAGATGGGAATGCCGCTGCAGTTGG
BO11779.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:30:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13005-PA | 1443 | CG13005-RA | 870..1440 | 589..19 | 2855 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:45:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13005-RA | 2027 | CG13005-RA | 980..1550 | 589..19 | 2855 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:45:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16804707..16805277 | 589..19 | 2855 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:45:49 has no hits.
BO11779.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:16:34 Download gff for
BO11779.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13005-PA | 870..1443 | 18..589 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:44:12 Download gff for
BO11779.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13005-PA | 870..1443 | 18..589 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:49:51 Download gff for
BO11779.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13005-RA | 957..1527 | 19..589 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:12:05 Download gff for
BO11779.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13005-RA | 980..1550 | 19..589 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:12:05 Download gff for
BO11779.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16804707..16805277 | 19..589 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:49:51 Download gff for
BO11779.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16698740..16699310 | 19..589 | 100 | | Minus |
BO11779.5prime Sequence
772 bp (738 high quality bases) assembled on 2006-04-19
> BO11779.5prime
GAAGTTATCAGTCGACATGAAGCATCTCCTGGAGGATCCCTCGGTCCTGG
CCGAGCTGCAGGTGCTGCCGGATAAGACCGGTGGTGTACAGGATCGACAG
GAGGCCGCCAAGAATCCTGCAGAGAATTCCGTGCCCGACGAAGATTTGCC
GGCTGCAGGAGGCGATTTGCTACGCGTTAAGGATACTCTGGGCCAGCTGG
CCTGCAGTCTGCACAAGCTGTCCAAAAACGATCACATAGTCATCGATCGA
AAGCGCCATCAGGTGATTCGCACAGATGCGGCTACGCAACAATTAACGAT
TTACCGCTGTCCGGATCCCGCCGTCATGGGGATTCGCCCGGCGATAGAGA
AAAATGCCCAGAATCCGCCTGCCAAAGTGGGTAGACCATCGAAAAGAGCC
TGTTCGGTTGCCACCGCTCCTGTGGCGAAGAAACCAACACTAGCGGAGCA
AAAACCTGCTCCCGACACCCATCGCACTAGATCCGGTCGCCAGGTGCGCA
GCTTGATGCCACAGCCCGCTCCCGTGACCAGTGGCTCAGCGGTTGAGCCA
AGTTCTGCCCGCATGCTTGAGATGCTGGTGGCCGACTTGCGGGACAAGGA
CTACCGGGCACCCATGGCAGCGCCGAAAAGCACGAGTGTCAGCAGCAGCG
TCAGTATAAGCCAGGAACCGACCACAACGACAACCATCCAACGAGCCGTG
CCCAAAAATGCCGTTTGTCCCGGCTGTGGAAAGATCTTTTTGGGACGCCG
TCTGCAGCGTCACTTTGTCAAA
BO11779.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:30:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13005-PA | 1443 | CG13005-RA | 1..756 | 17..772 | 3780 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:42:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13005-RA | 2027 | CG13005-RA | 111..866 | 17..772 | 3780 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:42:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16804070..16804593 | 249..772 | 2620 | 100 | Plus |
X | 23542271 | X | 16803760..16803992 | 17..249 | 1165 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:42:46 has no hits.
BO11779.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:16:35 Download gff for
BO11779.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13005-PA | 1..753 | 17..769 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:44:14 Download gff for
BO11779.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13005-PA | 1..753 | 17..769 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 18:33:57 Download gff for
BO11779.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13005-RA | 88..840 | 17..769 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:54:58 Download gff for
BO11779.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13005-RA | 111..863 | 17..769 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:54:58 Download gff for
BO11779.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16803760..16803992 | 17..249 | 100 | -> | Plus |
X | 16804071..16804590 | 250..769 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 18:33:57 Download gff for
BO11779.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16697793..16698025 | 17..249 | 100 | -> | Plus |
arm_X | 16698104..16698623 | 250..769 | 100 | | Plus |
BO11779.complete Sequence
1474 bp assembled on 2008-01-17
GenBank Submission: FJ632195
> BO11779.complete
GAAGTTATCAGTCGACATGAAGCATCTCCTGGAGGATCCCTCGGTCCTGG
CCGAGCTGCAGGTGCTGCCGGATAAGACCGGTGGTGTACAGGATCGACAG
GAGGCCGCCAAGAATCCTGCAGAGAATTCCGTGCCCGACGAAGATTTGCC
GGCTGCAGGAGGCGATTTGCTACGCGTTAAGGATACTCTGGGCCAGCTGG
CCTGCAGTCTGCACAAGCTGTCCAAAAACGATCACATAGTCATCGATCGA
AAGCGCCATCAGGTGATTCGCACAGATGCGGCTACGCAACAATTAACGAT
TTACCGCTGTCCGGATCCCGCCGTCATGGGGATTCGCCCGGCGATAGAGA
AAAATGCCCAGAATCCGCCTGCCAAAGTGGGTAGACCATCGAAAAGAGCC
TGTTCGGTTGCCACCGCTCCTGTGGCGAAGAAACCAACACTAGCGGAGCA
AAAACCTGCTCCCGACACCCATCGCACTAGATCCGGTCGCCAGGTGCGCA
GCTTGATGCCACAGCCCGCTCCCGTGACCAGTGGCTCAGCGGTTGAGCCA
AGTTCTGCCCGCATGCTTGAGATGCTGGTGGCCGACTTGCGGGACAAGGA
CTACCGGGCACCCATGGCAGCGCCGAAAAGCACGAGTGTCAGCAGCAGCG
TCAGTATAAGCCAGGAACCGACCACAACGACAACCATCCAACGAGCCGTG
CCCAAAAATGCCGTTTGTCCCGGCTGTGGAAAGATCTTTTTGGGACGCCG
TCTGCAGCGTCACTTTGTCAAATTCCCAGAGCACATGCCGCGTCCGGGCG
AGCAGACACCACCTGTAGCTGTAGCTACAGTACCATCAACGGTTCATCCT
CCCTCCACGCCGTCGCTGTTCGGCCTTCTGACCGCCCAACTGCAGCGGCA
TTCCCATCTCAGCGAGGAACAGCGCTCTGATCTCTTTCTTAACGAACTTA
ACGACTTTGTGGAGCAGCTGCAATTGCGCAGCCAACGGCTTATACGGAAT
ACCTCTGGACTGCATTTTGTAAATGCACGAATTGCACGAGTTTTGGGCAT
ACCCGAGGGTCAGTATGCGTTGGATATGTCCGCCATGGAGTCGCCGCTGG
CACCGATGCCGGAATCAGAGGGAGCGGCCTTGGTTGCCGGCAGCGGTAGT
GAAGGAGCCCGCAATCTGGTGGTCTACGCAGAGTTGAGCATGTCGCTGGA
CGATCCGCTCACAGACGAGGCTGCACAGCGTCTCAATCTATCGGCGGGCG
GTCAACTTCATCCGCCTTCCGAGGAGAGTCTGCTTAGAAACGTCAGCGAT
CTTATGCAGCCGCCAGTGGCAACTGCTCCTCCGACTGTGAACCATGGCTA
CGATCATGCCAGCGATAATGCCGTGGAGGCCCTGACCATGAAGGAAACGC
CCAACACAGAGGCTATTCTCGATCTCAACGTGGACTTCTTCCAGTTCAAT
CCGAATGCAAGCTTTCTAGACCAT
BO11779.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:06:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13005-RA | 1443 | CG13005-PA | 1..1440 | 17..1456 | 7200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:06:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13005-RA | 2027 | CG13005-RA | 111..1550 | 17..1456 | 7200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:06:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16804070..16805277 | 249..1456 | 6040 | 100 | Plus |
X | 23542271 | X | 16803760..16803992 | 17..249 | 1165 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 11:06:54 has no hits.
BO11779.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:59:05 Download gff for
BO11779.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13005-RA | 1..1443 | 17..1457 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:32:08 Download gff for
BO11779.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13005-RA | 81..1520 | 17..1458 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:21:17 Download gff for
BO11779.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13005-RA | 88..1527 | 17..1458 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:59:05 Download gff for
BO11779.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13005-RA | 81..1523 | 17..1457 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:39:03 Download gff for
BO11779.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13005-RA | 111..1550 | 17..1458 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:39:03 Download gff for
BO11779.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16803760..16803992 | 17..249 | 100 | -> | Plus |
X | 16804071..16805277 | 250..1458 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:21:17 Download gff for
BO11779.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16697793..16698025 | 17..249 | 100 | -> | Plus |
arm_X | 16698104..16699310 | 250..1458 | 99 | | Plus |
BO11779.pep Sequence
Translation from 16 to 1474
> BO11779.pep
MKHLLEDPSVLAELQVLPDKTGGVQDRQEAAKNPAENSVPDEDLPAAGGD
LLRVKDTLGQLACSLHKLSKNDHIVIDRKRHQVIRTDAATQQLTIYRCPD
PAVMGIRPAIEKNAQNPPAKVGRPSKRACSVATAPVAKKPTLAEQKPAPD
THRTRSGRQVRSLMPQPAPVTSGSAVEPSSARMLEMLVADLRDKDYRAPM
AAPKSTSVSSSVSISQEPTTTTTIQRAVPKNAVCPGCGKIFLGRRLQRHF
VKFPEHMPRPGEQTPPVAVATVPSTVHPPSTPSLFGLLTAQLQRHSHLSE
EQRSDLFLNELNDFVEQLQLRSQRLIRNTSGLHFVNARIARVLGIPEGQY
ALDMSAMESPLAPMPESEGAALVAGSGSEGARNLVVYAELSMSLDDPLTD
EAAQRLNLSAGGQLHPPSEESLLRNVSDLMQPPVATAPPTVNHGYDHASD
NAVEALTMKETPNTEAILDLNVDFFQFNPNASFLDH
BO11779.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:28:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13005-PA | 480 | CG13005-PA | 1..480 | 1..480 | 2457 | 100 | Plus |