Clone BO11779 Report

Search the DGRC for BO11779

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:117
Well:79
Vector:pDNR-Dual
Associated Gene/TranscriptCG13005-RA
Protein status:BO11779.pep:
Sequenced Size:1474

Clone Sequence Records

BO11779.3prime Sequence

589 bp (581 high quality bases) assembled on 2006-04-19

> BO11779.3prime
ATGGTCTAGAAAGCTTGCATTCGGATTGAACTGGAAGAAGTCCACGTTGA
GATCGAGAATAGCCTCTGTGTTGGGCGTTTCCTTCATGGTCAGGGCCTCC
ACGGCATTATCGCTGGCATGATCGTAGCCATGGTTCACAGTCGGAGGAGC
AGTTGCCACTGGCGGCTGCATAAGATCGCTGACGTTTCTAAGCAGACTCT
CCTCGGAAGGCGGATGAAGTTGACCGCCCGCCGATAGATTGAGACGCTGT
GCAGCCTCGTCTGTGAGCGGATCGTCCAGCGACATGCTCAACTCTGCGTA
GACCACCAGATTGCGGGCTCCTTCACTACCGCTGCCGGCAACCAAGGCCG
CTCCCTCTGATTCCGGCATCGGTGCCAGCGGCGACTCCATGGCGGACATA
TCCAACGCATACTGACCCTCGGGTATGCCCAAAACTCGTGCAATTCGTGC
ATTTACAAAATGCAGTCCAGAGGTATTCCGTATAAGCCGTTGGCTGCGCA
ATTGCAGCTGCTCCACAAAGTCGTTAAGTTCGTTAAGAAAGAGATCAGAG
CGCTGTTCCTCGCTGAGATGGGAATGCCGCTGCAGTTGG

BO11779.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:30:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG13005-PA 1443 CG13005-RA 870..1440 589..19 2855 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:45:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG13005-RA 2027 CG13005-RA 980..1550 589..19 2855 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:45:46
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16804707..16805277 589..19 2855 100 Minus
Blast to na_te.dros performed on 2015-02-10 22:45:49 has no hits.

BO11779.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:16:34 Download gff for BO11779.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13005-PA 870..1443 18..589 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:44:12 Download gff for BO11779.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13005-PA 870..1443 18..589 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:49:51 Download gff for BO11779.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13005-RA 957..1527 19..589 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:12:05 Download gff for BO11779.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13005-RA 980..1550 19..589 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:12:05 Download gff for BO11779.3prime
Subject Subject Range Query Range Percent Splice Strand
X 16804707..16805277 19..589 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:49:51 Download gff for BO11779.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16698740..16699310 19..589 100   Minus

BO11779.5prime Sequence

772 bp (738 high quality bases) assembled on 2006-04-19

> BO11779.5prime
GAAGTTATCAGTCGACATGAAGCATCTCCTGGAGGATCCCTCGGTCCTGG
CCGAGCTGCAGGTGCTGCCGGATAAGACCGGTGGTGTACAGGATCGACAG
GAGGCCGCCAAGAATCCTGCAGAGAATTCCGTGCCCGACGAAGATTTGCC
GGCTGCAGGAGGCGATTTGCTACGCGTTAAGGATACTCTGGGCCAGCTGG
CCTGCAGTCTGCACAAGCTGTCCAAAAACGATCACATAGTCATCGATCGA
AAGCGCCATCAGGTGATTCGCACAGATGCGGCTACGCAACAATTAACGAT
TTACCGCTGTCCGGATCCCGCCGTCATGGGGATTCGCCCGGCGATAGAGA
AAAATGCCCAGAATCCGCCTGCCAAAGTGGGTAGACCATCGAAAAGAGCC
TGTTCGGTTGCCACCGCTCCTGTGGCGAAGAAACCAACACTAGCGGAGCA
AAAACCTGCTCCCGACACCCATCGCACTAGATCCGGTCGCCAGGTGCGCA
GCTTGATGCCACAGCCCGCTCCCGTGACCAGTGGCTCAGCGGTTGAGCCA
AGTTCTGCCCGCATGCTTGAGATGCTGGTGGCCGACTTGCGGGACAAGGA
CTACCGGGCACCCATGGCAGCGCCGAAAAGCACGAGTGTCAGCAGCAGCG
TCAGTATAAGCCAGGAACCGACCACAACGACAACCATCCAACGAGCCGTG
CCCAAAAATGCCGTTTGTCCCGGCTGTGGAAAGATCTTTTTGGGACGCCG
TCTGCAGCGTCACTTTGTCAAA

BO11779.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:30:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG13005-PA 1443 CG13005-RA 1..756 17..772 3780 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:42:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG13005-RA 2027 CG13005-RA 111..866 17..772 3780 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:42:44
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16804070..16804593 249..772 2620 100 Plus
X 23542271 X 16803760..16803992 17..249 1165 100 Plus
Blast to na_te.dros performed on 2015-02-12 17:42:46 has no hits.

BO11779.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:16:35 Download gff for BO11779.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13005-PA 1..753 17..769 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:44:14 Download gff for BO11779.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13005-PA 1..753 17..769 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 18:33:57 Download gff for BO11779.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13005-RA 88..840 17..769 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:54:58 Download gff for BO11779.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13005-RA 111..863 17..769 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:54:58 Download gff for BO11779.5prime
Subject Subject Range Query Range Percent Splice Strand
X 16803760..16803992 17..249 100 -> Plus
X 16804071..16804590 250..769 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 18:33:57 Download gff for BO11779.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16697793..16698025 17..249 100 -> Plus
arm_X 16698104..16698623 250..769 100   Plus

BO11779.complete Sequence

1474 bp assembled on 2008-01-17

GenBank Submission: FJ632195

> BO11779.complete
GAAGTTATCAGTCGACATGAAGCATCTCCTGGAGGATCCCTCGGTCCTGG
CCGAGCTGCAGGTGCTGCCGGATAAGACCGGTGGTGTACAGGATCGACAG
GAGGCCGCCAAGAATCCTGCAGAGAATTCCGTGCCCGACGAAGATTTGCC
GGCTGCAGGAGGCGATTTGCTACGCGTTAAGGATACTCTGGGCCAGCTGG
CCTGCAGTCTGCACAAGCTGTCCAAAAACGATCACATAGTCATCGATCGA
AAGCGCCATCAGGTGATTCGCACAGATGCGGCTACGCAACAATTAACGAT
TTACCGCTGTCCGGATCCCGCCGTCATGGGGATTCGCCCGGCGATAGAGA
AAAATGCCCAGAATCCGCCTGCCAAAGTGGGTAGACCATCGAAAAGAGCC
TGTTCGGTTGCCACCGCTCCTGTGGCGAAGAAACCAACACTAGCGGAGCA
AAAACCTGCTCCCGACACCCATCGCACTAGATCCGGTCGCCAGGTGCGCA
GCTTGATGCCACAGCCCGCTCCCGTGACCAGTGGCTCAGCGGTTGAGCCA
AGTTCTGCCCGCATGCTTGAGATGCTGGTGGCCGACTTGCGGGACAAGGA
CTACCGGGCACCCATGGCAGCGCCGAAAAGCACGAGTGTCAGCAGCAGCG
TCAGTATAAGCCAGGAACCGACCACAACGACAACCATCCAACGAGCCGTG
CCCAAAAATGCCGTTTGTCCCGGCTGTGGAAAGATCTTTTTGGGACGCCG
TCTGCAGCGTCACTTTGTCAAATTCCCAGAGCACATGCCGCGTCCGGGCG
AGCAGACACCACCTGTAGCTGTAGCTACAGTACCATCAACGGTTCATCCT
CCCTCCACGCCGTCGCTGTTCGGCCTTCTGACCGCCCAACTGCAGCGGCA
TTCCCATCTCAGCGAGGAACAGCGCTCTGATCTCTTTCTTAACGAACTTA
ACGACTTTGTGGAGCAGCTGCAATTGCGCAGCCAACGGCTTATACGGAAT
ACCTCTGGACTGCATTTTGTAAATGCACGAATTGCACGAGTTTTGGGCAT
ACCCGAGGGTCAGTATGCGTTGGATATGTCCGCCATGGAGTCGCCGCTGG
CACCGATGCCGGAATCAGAGGGAGCGGCCTTGGTTGCCGGCAGCGGTAGT
GAAGGAGCCCGCAATCTGGTGGTCTACGCAGAGTTGAGCATGTCGCTGGA
CGATCCGCTCACAGACGAGGCTGCACAGCGTCTCAATCTATCGGCGGGCG
GTCAACTTCATCCGCCTTCCGAGGAGAGTCTGCTTAGAAACGTCAGCGAT
CTTATGCAGCCGCCAGTGGCAACTGCTCCTCCGACTGTGAACCATGGCTA
CGATCATGCCAGCGATAATGCCGTGGAGGCCCTGACCATGAAGGAAACGC
CCAACACAGAGGCTATTCTCGATCTCAACGTGGACTTCTTCCAGTTCAAT
CCGAATGCAAGCTTTCTAGACCAT

BO11779.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:06:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG13005-RA 1443 CG13005-PA 1..1440 17..1456 7200 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:06:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG13005-RA 2027 CG13005-RA 111..1550 17..1456 7200 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:06:53
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16804070..16805277 249..1456 6040 100 Plus
X 23542271 X 16803760..16803992 17..249 1165 100 Plus
Blast to na_te.dros performed on 2014-11-27 11:06:54 has no hits.

BO11779.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:59:05 Download gff for BO11779.complete
Subject Subject Range Query Range Percent Splice Strand
CG13005-RA 1..1443 17..1457 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:32:08 Download gff for BO11779.complete
Subject Subject Range Query Range Percent Splice Strand
CG13005-RA 81..1520 17..1458 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:21:17 Download gff for BO11779.complete
Subject Subject Range Query Range Percent Splice Strand
CG13005-RA 88..1527 17..1458 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:59:05 Download gff for BO11779.complete
Subject Subject Range Query Range Percent Splice Strand
CG13005-RA 81..1523 17..1457 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:39:03 Download gff for BO11779.complete
Subject Subject Range Query Range Percent Splice Strand
CG13005-RA 111..1550 17..1458 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:39:03 Download gff for BO11779.complete
Subject Subject Range Query Range Percent Splice Strand
X 16803760..16803992 17..249 100 -> Plus
X 16804071..16805277 250..1458 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:21:17 Download gff for BO11779.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16697793..16698025 17..249 100 -> Plus
arm_X 16698104..16699310 250..1458 99   Plus

BO11779.pep Sequence

Translation from 16 to 1474

> BO11779.pep
MKHLLEDPSVLAELQVLPDKTGGVQDRQEAAKNPAENSVPDEDLPAAGGD
LLRVKDTLGQLACSLHKLSKNDHIVIDRKRHQVIRTDAATQQLTIYRCPD
PAVMGIRPAIEKNAQNPPAKVGRPSKRACSVATAPVAKKPTLAEQKPAPD
THRTRSGRQVRSLMPQPAPVTSGSAVEPSSARMLEMLVADLRDKDYRAPM
AAPKSTSVSSSVSISQEPTTTTTIQRAVPKNAVCPGCGKIFLGRRLQRHF
VKFPEHMPRPGEQTPPVAVATVPSTVHPPSTPSLFGLLTAQLQRHSHLSE
EQRSDLFLNELNDFVEQLQLRSQRLIRNTSGLHFVNARIARVLGIPEGQY
ALDMSAMESPLAPMPESEGAALVAGSGSEGARNLVVYAELSMSLDDPLTD
EAAQRLNLSAGGQLHPPSEESLLRNVSDLMQPPVATAPPTVNHGYDHASD
NAVEALTMKETPNTEAILDLNVDFFQFNPNASFLDH

BO11779.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:28:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG13005-PA 480 CG13005-PA 1..480 1..480 2457 100 Plus