Clone Sequence Records
BO11780.3prime Sequence
455 bp (454 high quality bases) assembled on 2006-04-19
> BO11780.3prime
ATGGTCTAGAAAGCTTGCCAGGTCCACTCCATAGATGGACACCTCGAGAT
GAGCCGCTCGCTCCGGCTGCCCCTCGGAGTCCCGAAGTCGCCGGCAGCGG
AGGACCACAAACTGCTGGCCAATGCCGCCAGACGTGAGCACCGCCTCCGC
TTCATCGGCGCCTAGATCTTCGACATGCACACCCGTAATCCGGTAGTTAT
CGCTGGCTTTCTGCAAGCCGTAGGCCACATCTCGGCCGGGGCTACCCGGC
GTCAGGTAAACATCTTCGGTGTGCAGCACGCTGGCGTATTTGTTGACATG
ACCCCAGGTGACCGAGGCGGCGTTGCCGAGCAGCACCTGCCCAGGTAGCA
AACAGAGCAGCACCACCAGCCACACCAGCCGCATCGGAAACATCCCGAAC
ATCGCTGGCAACCATTCCCACTCCCACGCCCTTGTCAACATGTCGACTGA
TAACT
BO11780.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:30:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30411-PA | 426 | CG30411-RA | 1..423 | 441..19 | 2115 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:43:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30411-RA | 1237 | CG30411-RA | 124..552 | 447..19 | 2130 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:43:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23416062..23416298 | 447..211 | 1170 | 99.6 | Minus |
2R | 25286936 | 2R | 23416358..23416553 | 214..19 | 980 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:43:42 has no hits.
BO11780.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:16:36 Download gff for
BO11780.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30411-PA | 1..426 | 18..441 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:44:15 Download gff for
BO11780.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30411-PA | 1..426 | 18..441 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:28:21 Download gff for
BO11780.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30411-RA | 116..566 | 3..455 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:01:51 Download gff for
BO11780.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30411-RA | 116..566 | 3..455 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:01:51 Download gff for
BO11780.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23416362..23416567 | 3..210 | 97 | | Minus |
2R | 23416054..23416298 | 211..455 | 97 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:28:21 Download gff for
BO11780.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19303577..19303821 | 211..455 | 97 | -> | Minus |
arm_2R | 19303885..19304090 | 3..210 | 97 | | Minus |
BO11780.5prime Sequence
455 bp (454 high quality bases) assembled on 2006-04-19
> BO11780.5prime
GAAGTTATCAGTCGACATGTTGACAAGGGCGTGGGAGTGGGAATGGTTGC
CAGCGATGTTCGGGATGTTTCCGATGCGGCTGGTGTGGCTGGTGGTGCTG
CTCTGTTTGCTACCTGGGCAGGTGCTGCTCGGCAACGCCGCCTCGGTCAC
CTGGGGTCATGTCAACAAATACGCCAGCGTGCTGCACACCGAAGATGTTT
ACCTGACGCCGGGTAGCCCCGGCCGAGATGTGGCCTACGGCTTGCAGAAA
GCCAGCGATAACTACCGGATTACGGGTGTGCATGTCGAAGATCTAGGCGC
CGATGAAGCGGAGGCGGTGCTCACGTCTGGCGGCATTGGCCAGCAGTTTG
TGGTCCTCCGCTGCCGGCGACTTCGGGACTCCGAGGGGCAGCCGGAGCGA
GCGGCTCATCTCGAGGTGTCCATCTATGGAGTGGACCTGGCAAGCTTTCT
AGACC
BO11780.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:30:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30411-PA | 426 | CG30411-RA | 1..423 | 17..439 | 2115 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:21:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30411-RA | 1237 | CG30411-RA | 124..552 | 11..439 | 2130 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:21:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23416062..23416298 | 11..247 | 1170 | 99.6 | Plus |
2R | 25286936 | 2R | 23416358..23416553 | 244..439 | 980 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:21:39 has no hits.
BO11780.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:16:37 Download gff for
BO11780.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30411-PA | 1..426 | 17..440 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:44:16 Download gff for
BO11780.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30411-PA | 1..426 | 17..440 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 20:07:59 Download gff for
BO11780.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30411-RA | 116..566 | 3..455 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:54:01 Download gff for
BO11780.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30411-RA | 116..566 | 3..455 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:54:01 Download gff for
BO11780.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23416054..23416298 | 3..247 | 97 | -> | Plus |
2R | 23416362..23416567 | 248..455 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 20:07:59 Download gff for
BO11780.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19303577..19303821 | 3..247 | 97 | -> | Plus |
arm_2R | 19303885..19304090 | 248..455 | 97 | | Plus |
BO11780.complete Sequence
457 bp assembled on 2006-10-11
GenBank Submission: FJ632196
> BO11780.complete
GAAGTTATCAGTCGACATGTTGACAAGGGCGTGGGAGTGGGAATGGTTGC
CAGCGATGTTCGGGATGTTTCCGATGCGGCTGGTGTGGCTGGTGGTGCTG
CTCTGTTTGCTACCTGGGCAGGTGCTGCTCGGCAACGCCGCCTCGGTCAC
CTGGGGTCATGTCAACAAATACGCCAGCGTGCTGCACACCGAAGATGTTT
ACCTGACGCCGGGTAGCCCCGGCCGAGATGTGGCCTACGGCTTGCAGAAA
GCCAGCGATAACTACCGGATTACGGGTGTGCATGTCGAAGATCTAGGCGC
CGATGAAGCGGAGGCGGTGCTCACGTCTGGCGGCATTGGCCAGCAGTTTG
TGGTCCTCCGCTGCCGGCGACTTCGGGACTCCGAGGGGCAGCCGGAGCGA
GCGGCTCATCTCGAGGTGTCCATCTATGGAGTGGACCTGGCAAGCTTTCT
AGACCAT
BO11780.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:17:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30411-RA | 426 | CG30411-PA | 1..423 | 17..439 | 2115 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:17:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30411-RA | 1237 | CG30411-RA | 124..552 | 11..439 | 2130 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:17:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23416062..23416298 | 11..247 | 1170 | 99.6 | Plus |
2R | 25286936 | 2R | 23416358..23416553 | 244..439 | 980 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:17:34 has no hits.
BO11780.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:06:53 Download gff for
BO11780.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30411-RA | 1..426 | 17..440 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:22:33 Download gff for
BO11780.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30411-RA | 110..560 | 3..455 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:49:20 Download gff for
BO11780.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30411-RA | 135..552 | 22..441 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:06:53 Download gff for
BO11780.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30411-RA | 110..560 | 3..455 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:17:52 Download gff for
BO11780.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30411-RA | 135..552 | 22..441 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:17:52 Download gff for
BO11780.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23416073..23416298 | 22..247 | 100 | -> | Plus |
2R | 23416362..23416553 | 248..441 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:49:20 Download gff for
BO11780.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19303596..19303821 | 22..247 | 100 | -> | Plus |
arm_2R | 19303885..19304076 | 248..441 | 98 | | Plus |
BO11780.pep Sequence
Translation from 16 to 457
> BO11780.pep
MLTRAWEWEWLPAMFGMFPMRLVWLVVLLCLLPGQVLLGNAASVTWGHVN
KYASVLHTEDVYLTPGSPGRDVAYGLQKASDNYRITGVHVEDLGADEAEA
VLTSGGIGQQFVVLRCRRLRDSEGQPERAAHLEVSIYGVDLASFLDH
BO11780.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:49:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30411-PA | 141 | CG30411-PA | 1..141 | 1..141 | 747 | 100 | Plus |