Clone BO11780 Report

Search the DGRC for BO11780

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:117
Well:80
Vector:pDNR-Dual
Associated Gene/TranscriptCG30411-RA
Protein status:BO11780.pep: validated full length
Sequenced Size:457

Clone Sequence Records

BO11780.3prime Sequence

455 bp (454 high quality bases) assembled on 2006-04-19

> BO11780.3prime
ATGGTCTAGAAAGCTTGCCAGGTCCACTCCATAGATGGACACCTCGAGAT
GAGCCGCTCGCTCCGGCTGCCCCTCGGAGTCCCGAAGTCGCCGGCAGCGG
AGGACCACAAACTGCTGGCCAATGCCGCCAGACGTGAGCACCGCCTCCGC
TTCATCGGCGCCTAGATCTTCGACATGCACACCCGTAATCCGGTAGTTAT
CGCTGGCTTTCTGCAAGCCGTAGGCCACATCTCGGCCGGGGCTACCCGGC
GTCAGGTAAACATCTTCGGTGTGCAGCACGCTGGCGTATTTGTTGACATG
ACCCCAGGTGACCGAGGCGGCGTTGCCGAGCAGCACCTGCCCAGGTAGCA
AACAGAGCAGCACCACCAGCCACACCAGCCGCATCGGAAACATCCCGAAC
ATCGCTGGCAACCATTCCCACTCCCACGCCCTTGTCAACATGTCGACTGA
TAACT

BO11780.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:30:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG30411-PA 426 CG30411-RA 1..423 441..19 2115 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:43:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG30411-RA 1237 CG30411-RA 124..552 447..19 2130 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:43:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23416062..23416298 447..211 1170 99.6 Minus
2R 25286936 2R 23416358..23416553 214..19 980 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:43:42 has no hits.

BO11780.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:16:36 Download gff for BO11780.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30411-PA 1..426 18..441 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:44:15 Download gff for BO11780.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30411-PA 1..426 18..441 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:28:21 Download gff for BO11780.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30411-RA 116..566 3..455 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:01:51 Download gff for BO11780.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30411-RA 116..566 3..455 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:01:51 Download gff for BO11780.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 23416362..23416567 3..210 97   Minus
2R 23416054..23416298 211..455 97 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:28:21 Download gff for BO11780.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19303577..19303821 211..455 97 -> Minus
arm_2R 19303885..19304090 3..210 97   Minus

BO11780.5prime Sequence

455 bp (454 high quality bases) assembled on 2006-04-19

> BO11780.5prime
GAAGTTATCAGTCGACATGTTGACAAGGGCGTGGGAGTGGGAATGGTTGC
CAGCGATGTTCGGGATGTTTCCGATGCGGCTGGTGTGGCTGGTGGTGCTG
CTCTGTTTGCTACCTGGGCAGGTGCTGCTCGGCAACGCCGCCTCGGTCAC
CTGGGGTCATGTCAACAAATACGCCAGCGTGCTGCACACCGAAGATGTTT
ACCTGACGCCGGGTAGCCCCGGCCGAGATGTGGCCTACGGCTTGCAGAAA
GCCAGCGATAACTACCGGATTACGGGTGTGCATGTCGAAGATCTAGGCGC
CGATGAAGCGGAGGCGGTGCTCACGTCTGGCGGCATTGGCCAGCAGTTTG
TGGTCCTCCGCTGCCGGCGACTTCGGGACTCCGAGGGGCAGCCGGAGCGA
GCGGCTCATCTCGAGGTGTCCATCTATGGAGTGGACCTGGCAAGCTTTCT
AGACC

BO11780.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:30:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG30411-PA 426 CG30411-RA 1..423 17..439 2115 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:21:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG30411-RA 1237 CG30411-RA 124..552 11..439 2130 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:21:35
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23416062..23416298 11..247 1170 99.6 Plus
2R 25286936 2R 23416358..23416553 244..439 980 100 Plus
Blast to na_te.dros performed on 2015-02-11 16:21:39 has no hits.

BO11780.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:16:37 Download gff for BO11780.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30411-PA 1..426 17..440 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:44:16 Download gff for BO11780.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30411-PA 1..426 17..440 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 20:07:59 Download gff for BO11780.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30411-RA 116..566 3..455 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:54:01 Download gff for BO11780.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30411-RA 116..566 3..455 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:54:01 Download gff for BO11780.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23416054..23416298 3..247 97 -> Plus
2R 23416362..23416567 248..455 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 20:07:59 Download gff for BO11780.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19303577..19303821 3..247 97 -> Plus
arm_2R 19303885..19304090 248..455 97   Plus

BO11780.complete Sequence

457 bp assembled on 2006-10-11

GenBank Submission: FJ632196

> BO11780.complete
GAAGTTATCAGTCGACATGTTGACAAGGGCGTGGGAGTGGGAATGGTTGC
CAGCGATGTTCGGGATGTTTCCGATGCGGCTGGTGTGGCTGGTGGTGCTG
CTCTGTTTGCTACCTGGGCAGGTGCTGCTCGGCAACGCCGCCTCGGTCAC
CTGGGGTCATGTCAACAAATACGCCAGCGTGCTGCACACCGAAGATGTTT
ACCTGACGCCGGGTAGCCCCGGCCGAGATGTGGCCTACGGCTTGCAGAAA
GCCAGCGATAACTACCGGATTACGGGTGTGCATGTCGAAGATCTAGGCGC
CGATGAAGCGGAGGCGGTGCTCACGTCTGGCGGCATTGGCCAGCAGTTTG
TGGTCCTCCGCTGCCGGCGACTTCGGGACTCCGAGGGGCAGCCGGAGCGA
GCGGCTCATCTCGAGGTGTCCATCTATGGAGTGGACCTGGCAAGCTTTCT
AGACCAT

BO11780.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:17:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG30411-RA 426 CG30411-PA 1..423 17..439 2115 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:17:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG30411-RA 1237 CG30411-RA 124..552 11..439 2130 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:17:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23416062..23416298 11..247 1170 99.6 Plus
2R 25286936 2R 23416358..23416553 244..439 980 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:17:34 has no hits.

BO11780.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:06:53 Download gff for BO11780.complete
Subject Subject Range Query Range Percent Splice Strand
CG30411-RA 1..426 17..440 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:22:33 Download gff for BO11780.complete
Subject Subject Range Query Range Percent Splice Strand
CG30411-RA 110..560 3..455 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:49:20 Download gff for BO11780.complete
Subject Subject Range Query Range Percent Splice Strand
CG30411-RA 135..552 22..441 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:06:53 Download gff for BO11780.complete
Subject Subject Range Query Range Percent Splice Strand
CG30411-RA 110..560 3..455 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:17:52 Download gff for BO11780.complete
Subject Subject Range Query Range Percent Splice Strand
CG30411-RA 135..552 22..441 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:17:52 Download gff for BO11780.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23416073..23416298 22..247 100 -> Plus
2R 23416362..23416553 248..441 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:49:20 Download gff for BO11780.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19303596..19303821 22..247 100 -> Plus
arm_2R 19303885..19304076 248..441 98   Plus

BO11780.pep Sequence

Translation from 16 to 457

> BO11780.pep
MLTRAWEWEWLPAMFGMFPMRLVWLVVLLCLLPGQVLLGNAASVTWGHVN
KYASVLHTEDVYLTPGSPGRDVAYGLQKASDNYRITGVHVEDLGADEAEA
VLTSGGIGQQFVVLRCRRLRDSEGQPERAAHLEVSIYGVDLASFLDH

BO11780.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:49:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG30411-PA 141 CG30411-PA 1..141 1..141 747 100 Plus