Clone Sequence Records
BO11786.complete Sequence
1891 bp assembled on 2010-04-13
GenBank Submission: KX798531
> BO11786.complete
GAAGTTATCAGTCGACATGGCCGCCCAGGAAAACACGGAGATCAGCACAA
AGTTCTCAACGCTGAACGTGAACGCGGTAGAATTTGTGCCCAGTTTCAGT
TACAACAGCGTTGTGAATGTAGCTGAGGAGGCGGCGGCAGTAGTGGTTGC
AGCGGCTGCGGCCGAGGAGACGGCGGATCCGGGTCCCGCCTCCGGTTCAG
CCACGCCAGCCACCACACCCGATTCCGTCGGCAGCGGGGGATCCACAGCG
GGAGCAGCTCCACCGCCTCCAACTGCACAGGGGGCGGGGGCAGCAGCACC
CTCAGCACAGCCGCCCACATCATCCTCCAATTCCGCATCGCCAGCGCCGG
GTTCGCCAGCCACCACGCCTTCAGCAGGAGCAGCGGCGGCGGATCCAACG
CCCATCGATGGTCTCAACCCCTCGGACAAAATCGCAAACAATGAAACCGA
TCCTGCTGACAGCTGGGATGTGGACGATGCAGTGATCACGCCCGAGGATG
AGGAGGTGGAAGATGCTGAGTTCACGGAGGGCGAGGCCACGCCGAAGGTG
TCCAAGAAGAAGGTGGTTAAGGTGGAGGAAAATAGGAGCAAGCGTGAGCA
CGTGAATGTTGTGTTCATTGGCCATGTTGATGCTGGCAAATCAACAATTG
GCGGACAGATCATGTCGCTCACGGGCATGGTGGACAAGCGAACACTGGAG
AAGTACGAGCGGGAGGCACGTGAGAAGTCGCGTGAGAGTTGGTACTTGTC
CTGGGCGCTGGACACCAACCAGGAGGAACGCGACAAGGGCAAGACCGTCG
AGGTGGGACGAGCCTTCTTCGAAACGGACCGAAAGCATTTCACTATCCTC
GACGCACCCGGTCACAAGAGCTTCGTGCCTAACATGATCGGTGGCGCGGC
GCAGGCCGATCTCGCAGTGCTGGTCATCTCGGCGCGAAAGGGTGAATTCG
AGACGGGCTTCGATCGCGGCGGCCAGACCCGAGAACATGCCATGTTGGCC
AAGACCGCCGGCGTTAAGCATCTGGTCGTGCTGGTCAACAAAATGGATGA
CCCAACGGTCAATTGGGATCAGACGCGCTACAACGAATGCAAAGACAAGA
TACTACCATACCTCAAGAAGCTGGGCTTCAACCCGGCCAAGGACCTTACC
TTTATGCCTTGCTCGGGCCTCAGCGGATACGGGCTGAAAGACCAAATCCC
GGAGACGCTCTGCCCCTGGTACCGGGGACCCGCCTTCATTCCGTTCATTG
ACGAGCTGCCCTCGCTCAACCGCAAGTCGGACGGGCCTTTCATCATGCCA
ATTGTGGACAAGTACAAGGATATGGGCACCGTGGTGATGGGCAAGGTTGA
GTCCGGAACAGCGCGCAAGGGTCAAAACCTGTTAGTGATGCCAAATAGGA
CGCAAGTGGCGGTGGATCAGTTGTTCTCGGACGACTTTGAAGTCACTTCT
GTTGGTCCCGGCGAGAACGTCAAGATTAAGCTGAAAGGTATTGAGGAGGA
GGATGTCTCGCCCGGTTTTGTTCTCTGCGATGCAGCCAATCCCATCAAGA
CGGGAAAAATCTTTGATGCTCAGGTCGTAATTTTAGAACACAAATCAATT
ATCTGTGCGGGTTACTCGGCTGTCATGCACATACACTGTGCAGCCGAAGA
AGTCACAGTTAAGGCCCTCATCTGTTTGGTCGACAAAAAGTCTGGTGACA
AATCAAAAACACGTCCACGGTTCGTTAAGCAGGATCAGGTTGCAATTATG
CGAATCGAGTGCTCCGGAATGATTTGCCTTGAACAATTTAAGCTATTCCC
TCAAATGGGCCGTTTTACGCTCAGAGATGAAAACAAAACCATTGCCATTG
GCAAGGTGCTGAAGGTGGTCGAAGCAAGCTTTCTAGACCAT
BO11786.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:23:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Elf-RB | 1860 | CG6382-PB | 1..1857 | 17..1873 | 9285 | 100 | Plus |
Elf-RD | 1860 | CG6382-PD | 1..1857 | 17..1873 | 9285 | 100 | Plus |
Elf-RA | 1860 | CG6382-PA | 1..1857 | 17..1873 | 9285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:23:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Elf-RB | 4120 | CG6382-RB | 546..2402 | 17..1873 | 9285 | 100 | Plus |
Elf-RD | 3003 | CG6382-RD | 106..1962 | 17..1873 | 9285 | 100 | Plus |
Elf-RA | 3443 | CG6382-RA | 546..2402 | 17..1873 | 9285 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:23:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12438071..12438841 | 629..1399 | 3855 | 100 | Plus |
2L | 23513712 | 2L | 12434997..12435423 | 17..443 | 2135 | 100 | Plus |
2L | 23513712 | 2L | 12437812..12437998 | 443..629 | 935 | 100 | Plus |
2L | 23513712 | 2L | 12439054..12439231 | 1487..1664 | 890 | 100 | Plus |
2L | 23513712 | 2L | 12439294..12439464 | 1662..1832 | 855 | 100 | Plus |
2L | 23513712 | 2L | 12438901..12438989 | 1399..1487 | 445 | 100 | Plus |
2L | 23513712 | 2L | 12439521..12439561 | 1833..1873 | 205 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:23:44 has no hits.
BO11786.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:25:39 Download gff for
BO11786.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Elf-RA | 566..2422 | 17..1875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:58:12 Download gff for
BO11786.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Elf-RA | 546..2402 | 17..1875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:17:33 Download gff for
BO11786.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Elf-RA | 546..2402 | 17..1875 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:17:33 Download gff for
BO11786.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12439521..12439561 | 1833..1875 | 95 | | Plus |
2L | 12438902..12438988 | 1400..1486 | 100 | -> | Plus |
2L | 12439054..12439230 | 1487..1663 | 100 | -> | Plus |
2L | 12439296..12439464 | 1664..1832 | 100 | -> | Plus |
2L | 12434997..12435423 | 17..443 | 100 | -> | Plus |
2L | 12437813..12437998 | 444..629 | 100 | -> | Plus |
2L | 12438072..12438841 | 630..1399 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:58:12 Download gff for
BO11786.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12434997..12435423 | 17..443 | 100 | -> | Plus |
arm_2L | 12437813..12437998 | 444..629 | 100 | -> | Plus |
arm_2L | 12438072..12438841 | 630..1399 | 100 | -> | Plus |
arm_2L | 12438902..12438988 | 1400..1486 | 100 | -> | Plus |
arm_2L | 12439054..12439230 | 1487..1663 | 100 | -> | Plus |
arm_2L | 12439296..12439464 | 1664..1832 | 100 | -> | Plus |
arm_2L | 12439521..12439561 | 1833..1875 | 95 | | Plus |
BO11786.5prime Sequence
670 bp (618 high quality bases) assembled on 2006-04-19
> BO11786.5prime
GAAGTTATCAGTCGACATGGCCGCCCAGGAAAACACGGAGATCAGCACAA
AGTTCTCAACGCTGAACGTGAACGCGGTAGAATTTGTGCCCAGTTTCAGT
TACAACAGCGTTGTGAATGTAGCTGAGGAGGCGGCGGCAGTAGTGGTTGC
AGCGGCTGCGGCCGAGGAGACGGCGGATCCGGGTCCCGCCTCCGGTTCAG
CCACGCCAGCCACCACACCCGATTCCGTCGGCAGCGGGGGATCCACAGCG
GGAGCAGCTCCACCGCCTCCAACTGCACAGGGGGCGGGGGCAGCAGCACC
CTCAGCACAGCCGCCCACATCATCCTCCAATTCCGCATCGCCAGCGCCGG
GTTCGCCAGCCACCACGCCTTCAGCAGGAGCAGCGGCGGCGGATCCAACG
CCCATCGATGGTCTCAACCCCTCGGACAAAATCGCAAACAATGAAACCGA
TCCTGCTGACAGCTGGGATGTGGACGATGCAGTGATCACGCCCGAGGATG
AGGAGGTGGAAGATGCTGAGTTCACGGAGGGCGAGGCCACGCCGAAGGTG
TCCAAGAAGAAGGTGGTTAAGGTGGAGGAAAATAGGAGCAAGCGTGAGCA
CGTGAATGTTGTGTTCATTGGCCATGGTGATGCTGGCAAATCTACAATTG
GCGGACAGATGATGTCGCTC
BO11786.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:30:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6382-PA | 1860 | Elf-RA | 1..654 | 17..670 | 3195 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:15:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Elf-RB | 4120 | CG6382-RB | 546..1199 | 17..670 | 3225 | 99.5 | Plus |
Elf-RD | 3003 | CG6382-RD | 106..759 | 17..670 | 3225 | 99.5 | Plus |
Elf-RA | 3443 | CG6382-RA | 546..1199 | 17..670 | 3225 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:15:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12434997..12435423 | 17..443 | 2135 | 100 | Plus |
2L | 23513712 | 2L | 12437812..12437995 | 443..626 | 920 | 100 | Plus |
2L | 23513712 | 2L | 12438071..12438112 | 629..670 | 180 | 95.2 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:15:04 has no hits.
BO11786.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:16:49 Download gff for
BO11786.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Elf-PA | 1..654 | 17..670 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:44:34 Download gff for
BO11786.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6382-PA | 1..654 | 17..670 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:57:13 Download gff for
BO11786.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Elf-RA | 546..1199 | 17..670 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:37:56 Download gff for
BO11786.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Elf-RA | 546..1199 | 17..670 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:37:56 Download gff for
BO11786.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12434997..12435423 | 17..443 | 100 | -> | Plus |
2L | 12437813..12437998 | 444..629 | 99 | -> | Plus |
2L | 12438072..12438112 | 630..670 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:57:13 Download gff for
BO11786.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12434997..12435423 | 17..443 | 100 | -> | Plus |
arm_2L | 12437813..12437998 | 444..629 | 99 | -> | Plus |
arm_2L | 12438072..12438112 | 630..670 | 95 | | Plus |
BO11786.3prime Sequence
804 bp (779 high quality bases) assembled on 2006-04-19
> BO11786.3prime
ATGGTCTAGAAAGCTTGCTTCGACCACCTTCAGCACCTTGCCAATGGCAA
TGGTTTTGTTTTCATCTCTGAGCGTAAAACGGCCCATTTGAGGGAATAGC
TTAAATTGTTCAAGGCAAATCATTCCGGAGCACTCGATTCGCATAATTGC
AACCTGATCCTGCTTAACGAACCGTGGACGTGTTTTTGATTTGTCACCAG
ACTTTTTGTCGACCAAACAGATGAGGGCCTTAACTGTGACTTCTTCGGCT
GCACAGTGTATGTGCATGACAGCCGAGTAACCCGCACAGATAATTGATTT
GTGTTCTAAAATTACGACCTGAGCATCAAAGATTTTTCCCGTCTTGATGG
GATTGGCTGCATCGCAGAGAACAAAACCGGGCGAGACATCCTCCTCCTCA
ATACCTTTCAGCTTAATCTTGACGTTCTCGCCGGGACCAACAGAAGTGAC
TTCAAAGTCGTCCGAGAACAACTGATCCACCGCCACTTGCGTCCTATTTG
GCATCACTAACAGGTTTTGACCCTTGCGCGCTGTTCCGGACTCAACCTTG
CCCATCACCACGGTGCCCATATCCTTGTACTTGTCCACAATTGGCATGAT
GAAAGGCCCGTCCGACTTGCGGTTGAGCGAGGGCAGCTCGTCAATGAACG
GAATGAAGGCGGGTCCCCGGTACCAGGGGCAGAGCGTCTCCGGGATTTGG
TCTTTCAGCCCGTATCCGCTGAGGCCCGAGCAAGGCATAAAGGTAAGGTC
CTTGGCCGGGTTGAAGCCCAGCTTCTTGAGGTATGGTAGTATCTTGTCTT
TGCA
BO11786.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:30:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6382-PA | 1860 | Elf-RA | 1072..1857 | 804..19 | 3930 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:54:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Elf-RC | 2760 | CG6382-RC | 934..1719 | 804..19 | 3930 | 100 | Minus |
Elf-RB | 4120 | CG6382-RB | 1617..2402 | 804..19 | 3930 | 100 | Minus |
Elf-RD | 3003 | CG6382-RD | 1177..1962 | 804..19 | 3930 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:54:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12438530..12438841 | 804..493 | 1560 | 100 | Minus |
2L | 23513712 | 2L | 12439054..12439231 | 405..228 | 890 | 100 | Minus |
2L | 23513712 | 2L | 12439294..12439464 | 230..60 | 855 | 100 | Minus |
2L | 23513712 | 2L | 12438901..12438989 | 493..405 | 445 | 100 | Minus |
2L | 23513712 | 2L | 12439521..12439561 | 59..19 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:54:30 has no hits.
BO11786.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:16:48 Download gff for
BO11786.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Elf-PA | 1073..1860 | 15..803 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:44:32 Download gff for
BO11786.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6382-PA | 1073..1860 | 15..803 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 12:54:08 Download gff for
BO11786.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Elf-RA | 1618..2408 | 11..803 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:14:10 Download gff for
BO11786.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Elf-RD | 1178..1968 | 11..803 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:14:10 Download gff for
BO11786.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12439521..12439567 | 11..59 | 91 | | Minus |
2L | 12439054..12439230 | 229..405 | 100 | -> | Minus |
2L | 12439296..12439464 | 60..228 | 100 | -> | Minus |
2L | 12438531..12438841 | 493..803 | 100 | -> | Minus |
2L | 12438902..12438988 | 406..492 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 12:54:08 Download gff for
BO11786.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12438531..12438841 | 493..803 | 100 | -> | Minus |
arm_2L | 12438902..12438988 | 406..492 | 100 | -> | Minus |
arm_2L | 12439054..12439230 | 229..405 | 100 | -> | Minus |
arm_2L | 12439296..12439464 | 60..228 | 100 | -> | Minus |
arm_2L | 12439521..12439567 | 11..59 | 91 | | Minus |
BO11786.pep Sequence
Translation from 16 to 1891
> BO11786.pep
MAAQENTEISTKFSTLNVNAVEFVPSFSYNSVVNVAEEAAAVVVAAAAAE
ETADPGPASGSATPATTPDSVGSGGSTAGAAPPPPTAQGAGAAAPSAQPP
TSSSNSASPAPGSPATTPSAGAAAADPTPIDGLNPSDKIANNETDPADSW
DVDDAVITPEDEEVEDAEFTEGEATPKVSKKKVVKVEENRSKREHVNVVF
IGHVDAGKSTIGGQIMSLTGMVDKRTLEKYEREAREKSRESWYLSWALDT
NQEERDKGKTVEVGRAFFETDRKHFTILDAPGHKSFVPNMIGGAAQADLA
VLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLVNKMDDPTVNW
DQTRYNECKDKILPYLKKLGFNPAKDLTFMPCSGLSGYGLKDQIPETLCP
WYRGPAFIPFIDELPSLNRKSDGPFIMPIVDKYKDMGTVVMGKVESGTAR
KGQNLLVMPNRTQVAVDQLFSDDFEVTSVGPGENVKIKLKGIEEEDVSPG
FVLCDAANPIKTGKIFDAQVVILEHKSIICAGYSAVMHIHCAAEEVTVKA
LICLVDKKSGDKSKTRPRFVKQDQVAIMRIECSGMICLEQFKLFPQMGRF
TLRDENKTIAIGKVLKVVEASFLDH
BO11786.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:22:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Elf-PB | 619 | CG6382-PB | 1..619 | 1..619 | 3197 | 100 | Plus |
Elf-PD | 619 | CG6382-PD | 1..619 | 1..619 | 3197 | 100 | Plus |
Elf-PA | 619 | CG6382-PA | 1..619 | 1..619 | 3197 | 100 | Plus |
Elf-PC | 495 | CG6382-PC | 19..495 | 143..619 | 2483 | 99.8 | Plus |
HBS1-PB | 670 | CG1898-PB | 149..669 | 85..617 | 806 | 34.6 | Plus |