Clone BO11786 Report

Search the DGRC for BO11786

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:117
Well:86
Vector:pDNR-Dual
Associated Gene/TranscriptElf-RA
Protein status:BO11786.pep: Imported from assembly
Sequenced Size:1891

Clone Sequence Records

BO11786.complete Sequence

1891 bp assembled on 2010-04-13

GenBank Submission: KX798531

> BO11786.complete
GAAGTTATCAGTCGACATGGCCGCCCAGGAAAACACGGAGATCAGCACAA
AGTTCTCAACGCTGAACGTGAACGCGGTAGAATTTGTGCCCAGTTTCAGT
TACAACAGCGTTGTGAATGTAGCTGAGGAGGCGGCGGCAGTAGTGGTTGC
AGCGGCTGCGGCCGAGGAGACGGCGGATCCGGGTCCCGCCTCCGGTTCAG
CCACGCCAGCCACCACACCCGATTCCGTCGGCAGCGGGGGATCCACAGCG
GGAGCAGCTCCACCGCCTCCAACTGCACAGGGGGCGGGGGCAGCAGCACC
CTCAGCACAGCCGCCCACATCATCCTCCAATTCCGCATCGCCAGCGCCGG
GTTCGCCAGCCACCACGCCTTCAGCAGGAGCAGCGGCGGCGGATCCAACG
CCCATCGATGGTCTCAACCCCTCGGACAAAATCGCAAACAATGAAACCGA
TCCTGCTGACAGCTGGGATGTGGACGATGCAGTGATCACGCCCGAGGATG
AGGAGGTGGAAGATGCTGAGTTCACGGAGGGCGAGGCCACGCCGAAGGTG
TCCAAGAAGAAGGTGGTTAAGGTGGAGGAAAATAGGAGCAAGCGTGAGCA
CGTGAATGTTGTGTTCATTGGCCATGTTGATGCTGGCAAATCAACAATTG
GCGGACAGATCATGTCGCTCACGGGCATGGTGGACAAGCGAACACTGGAG
AAGTACGAGCGGGAGGCACGTGAGAAGTCGCGTGAGAGTTGGTACTTGTC
CTGGGCGCTGGACACCAACCAGGAGGAACGCGACAAGGGCAAGACCGTCG
AGGTGGGACGAGCCTTCTTCGAAACGGACCGAAAGCATTTCACTATCCTC
GACGCACCCGGTCACAAGAGCTTCGTGCCTAACATGATCGGTGGCGCGGC
GCAGGCCGATCTCGCAGTGCTGGTCATCTCGGCGCGAAAGGGTGAATTCG
AGACGGGCTTCGATCGCGGCGGCCAGACCCGAGAACATGCCATGTTGGCC
AAGACCGCCGGCGTTAAGCATCTGGTCGTGCTGGTCAACAAAATGGATGA
CCCAACGGTCAATTGGGATCAGACGCGCTACAACGAATGCAAAGACAAGA
TACTACCATACCTCAAGAAGCTGGGCTTCAACCCGGCCAAGGACCTTACC
TTTATGCCTTGCTCGGGCCTCAGCGGATACGGGCTGAAAGACCAAATCCC
GGAGACGCTCTGCCCCTGGTACCGGGGACCCGCCTTCATTCCGTTCATTG
ACGAGCTGCCCTCGCTCAACCGCAAGTCGGACGGGCCTTTCATCATGCCA
ATTGTGGACAAGTACAAGGATATGGGCACCGTGGTGATGGGCAAGGTTGA
GTCCGGAACAGCGCGCAAGGGTCAAAACCTGTTAGTGATGCCAAATAGGA
CGCAAGTGGCGGTGGATCAGTTGTTCTCGGACGACTTTGAAGTCACTTCT
GTTGGTCCCGGCGAGAACGTCAAGATTAAGCTGAAAGGTATTGAGGAGGA
GGATGTCTCGCCCGGTTTTGTTCTCTGCGATGCAGCCAATCCCATCAAGA
CGGGAAAAATCTTTGATGCTCAGGTCGTAATTTTAGAACACAAATCAATT
ATCTGTGCGGGTTACTCGGCTGTCATGCACATACACTGTGCAGCCGAAGA
AGTCACAGTTAAGGCCCTCATCTGTTTGGTCGACAAAAAGTCTGGTGACA
AATCAAAAACACGTCCACGGTTCGTTAAGCAGGATCAGGTTGCAATTATG
CGAATCGAGTGCTCCGGAATGATTTGCCTTGAACAATTTAAGCTATTCCC
TCAAATGGGCCGTTTTACGCTCAGAGATGAAAACAAAACCATTGCCATTG
GCAAGGTGCTGAAGGTGGTCGAAGCAAGCTTTCTAGACCAT

BO11786.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:23:45
Subject Length Description Subject Range Query Range Score Percent Strand
Elf-RB 1860 CG6382-PB 1..1857 17..1873 9285 100 Plus
Elf-RD 1860 CG6382-PD 1..1857 17..1873 9285 100 Plus
Elf-RA 1860 CG6382-PA 1..1857 17..1873 9285 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:23:46
Subject Length Description Subject Range Query Range Score Percent Strand
Elf-RB 4120 CG6382-RB 546..2402 17..1873 9285 100 Plus
Elf-RD 3003 CG6382-RD 106..1962 17..1873 9285 100 Plus
Elf-RA 3443 CG6382-RA 546..2402 17..1873 9285 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:23:43
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12438071..12438841 629..1399 3855 100 Plus
2L 23513712 2L 12434997..12435423 17..443 2135 100 Plus
2L 23513712 2L 12437812..12437998 443..629 935 100 Plus
2L 23513712 2L 12439054..12439231 1487..1664 890 100 Plus
2L 23513712 2L 12439294..12439464 1662..1832 855 100 Plus
2L 23513712 2L 12438901..12438989 1399..1487 445 100 Plus
2L 23513712 2L 12439521..12439561 1833..1873 205 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:23:44 has no hits.

BO11786.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:25:39 Download gff for BO11786.complete
Subject Subject Range Query Range Percent Splice Strand
Elf-RA 566..2422 17..1875 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:58:12 Download gff for BO11786.complete
Subject Subject Range Query Range Percent Splice Strand
Elf-RA 546..2402 17..1875 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:17:33 Download gff for BO11786.complete
Subject Subject Range Query Range Percent Splice Strand
Elf-RA 546..2402 17..1875 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:17:33 Download gff for BO11786.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12439521..12439561 1833..1875 95   Plus
2L 12438902..12438988 1400..1486 100 -> Plus
2L 12439054..12439230 1487..1663 100 -> Plus
2L 12439296..12439464 1664..1832 100 -> Plus
2L 12434997..12435423 17..443 100 -> Plus
2L 12437813..12437998 444..629 100 -> Plus
2L 12438072..12438841 630..1399 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:58:12 Download gff for BO11786.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12434997..12435423 17..443 100 -> Plus
arm_2L 12437813..12437998 444..629 100 -> Plus
arm_2L 12438072..12438841 630..1399 100 -> Plus
arm_2L 12438902..12438988 1400..1486 100 -> Plus
arm_2L 12439054..12439230 1487..1663 100 -> Plus
arm_2L 12439296..12439464 1664..1832 100 -> Plus
arm_2L 12439521..12439561 1833..1875 95   Plus

BO11786.5prime Sequence

670 bp (618 high quality bases) assembled on 2006-04-19

> BO11786.5prime
GAAGTTATCAGTCGACATGGCCGCCCAGGAAAACACGGAGATCAGCACAA
AGTTCTCAACGCTGAACGTGAACGCGGTAGAATTTGTGCCCAGTTTCAGT
TACAACAGCGTTGTGAATGTAGCTGAGGAGGCGGCGGCAGTAGTGGTTGC
AGCGGCTGCGGCCGAGGAGACGGCGGATCCGGGTCCCGCCTCCGGTTCAG
CCACGCCAGCCACCACACCCGATTCCGTCGGCAGCGGGGGATCCACAGCG
GGAGCAGCTCCACCGCCTCCAACTGCACAGGGGGCGGGGGCAGCAGCACC
CTCAGCACAGCCGCCCACATCATCCTCCAATTCCGCATCGCCAGCGCCGG
GTTCGCCAGCCACCACGCCTTCAGCAGGAGCAGCGGCGGCGGATCCAACG
CCCATCGATGGTCTCAACCCCTCGGACAAAATCGCAAACAATGAAACCGA
TCCTGCTGACAGCTGGGATGTGGACGATGCAGTGATCACGCCCGAGGATG
AGGAGGTGGAAGATGCTGAGTTCACGGAGGGCGAGGCCACGCCGAAGGTG
TCCAAGAAGAAGGTGGTTAAGGTGGAGGAAAATAGGAGCAAGCGTGAGCA
CGTGAATGTTGTGTTCATTGGCCATGGTGATGCTGGCAAATCTACAATTG
GCGGACAGATGATGTCGCTC

BO11786.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:30:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG6382-PA 1860 Elf-RA 1..654 17..670 3195 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:15:07
Subject Length Description Subject Range Query Range Score Percent Strand
Elf-RB 4120 CG6382-RB 546..1199 17..670 3225 99.5 Plus
Elf-RD 3003 CG6382-RD 106..759 17..670 3225 99.5 Plus
Elf-RA 3443 CG6382-RA 546..1199 17..670 3225 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:15:01
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12434997..12435423 17..443 2135 100 Plus
2L 23513712 2L 12437812..12437995 443..626 920 100 Plus
2L 23513712 2L 12438071..12438112 629..670 180 95.2 Plus
Blast to na_te.dros performed on 2015-02-12 05:15:04 has no hits.

BO11786.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:16:49 Download gff for BO11786.5prime
Subject Subject Range Query Range Percent Splice Strand
Elf-PA 1..654 17..670 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:44:34 Download gff for BO11786.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6382-PA 1..654 17..670 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:57:13 Download gff for BO11786.5prime
Subject Subject Range Query Range Percent Splice Strand
Elf-RA 546..1199 17..670 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:37:56 Download gff for BO11786.5prime
Subject Subject Range Query Range Percent Splice Strand
Elf-RA 546..1199 17..670 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:37:56 Download gff for BO11786.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 12434997..12435423 17..443 100 -> Plus
2L 12437813..12437998 444..629 99 -> Plus
2L 12438072..12438112 630..670 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:57:13 Download gff for BO11786.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12434997..12435423 17..443 100 -> Plus
arm_2L 12437813..12437998 444..629 99 -> Plus
arm_2L 12438072..12438112 630..670 95   Plus

BO11786.3prime Sequence

804 bp (779 high quality bases) assembled on 2006-04-19

> BO11786.3prime
ATGGTCTAGAAAGCTTGCTTCGACCACCTTCAGCACCTTGCCAATGGCAA
TGGTTTTGTTTTCATCTCTGAGCGTAAAACGGCCCATTTGAGGGAATAGC
TTAAATTGTTCAAGGCAAATCATTCCGGAGCACTCGATTCGCATAATTGC
AACCTGATCCTGCTTAACGAACCGTGGACGTGTTTTTGATTTGTCACCAG
ACTTTTTGTCGACCAAACAGATGAGGGCCTTAACTGTGACTTCTTCGGCT
GCACAGTGTATGTGCATGACAGCCGAGTAACCCGCACAGATAATTGATTT
GTGTTCTAAAATTACGACCTGAGCATCAAAGATTTTTCCCGTCTTGATGG
GATTGGCTGCATCGCAGAGAACAAAACCGGGCGAGACATCCTCCTCCTCA
ATACCTTTCAGCTTAATCTTGACGTTCTCGCCGGGACCAACAGAAGTGAC
TTCAAAGTCGTCCGAGAACAACTGATCCACCGCCACTTGCGTCCTATTTG
GCATCACTAACAGGTTTTGACCCTTGCGCGCTGTTCCGGACTCAACCTTG
CCCATCACCACGGTGCCCATATCCTTGTACTTGTCCACAATTGGCATGAT
GAAAGGCCCGTCCGACTTGCGGTTGAGCGAGGGCAGCTCGTCAATGAACG
GAATGAAGGCGGGTCCCCGGTACCAGGGGCAGAGCGTCTCCGGGATTTGG
TCTTTCAGCCCGTATCCGCTGAGGCCCGAGCAAGGCATAAAGGTAAGGTC
CTTGGCCGGGTTGAAGCCCAGCTTCTTGAGGTATGGTAGTATCTTGTCTT
TGCA

BO11786.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:30:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG6382-PA 1860 Elf-RA 1072..1857 804..19 3930 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:54:30
Subject Length Description Subject Range Query Range Score Percent Strand
Elf-RC 2760 CG6382-RC 934..1719 804..19 3930 100 Minus
Elf-RB 4120 CG6382-RB 1617..2402 804..19 3930 100 Minus
Elf-RD 3003 CG6382-RD 1177..1962 804..19 3930 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:54:29
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12438530..12438841 804..493 1560 100 Minus
2L 23513712 2L 12439054..12439231 405..228 890 100 Minus
2L 23513712 2L 12439294..12439464 230..60 855 100 Minus
2L 23513712 2L 12438901..12438989 493..405 445 100 Minus
2L 23513712 2L 12439521..12439561 59..19 205 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:54:30 has no hits.

BO11786.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:16:48 Download gff for BO11786.3prime
Subject Subject Range Query Range Percent Splice Strand
Elf-PA 1073..1860 15..803 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:44:32 Download gff for BO11786.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6382-PA 1073..1860 15..803 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 12:54:08 Download gff for BO11786.3prime
Subject Subject Range Query Range Percent Splice Strand
Elf-RA 1618..2408 11..803 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:14:10 Download gff for BO11786.3prime
Subject Subject Range Query Range Percent Splice Strand
Elf-RD 1178..1968 11..803 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:14:10 Download gff for BO11786.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 12439521..12439567 11..59 91   Minus
2L 12439054..12439230 229..405 100 -> Minus
2L 12439296..12439464 60..228 100 -> Minus
2L 12438531..12438841 493..803 100 -> Minus
2L 12438902..12438988 406..492 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 12:54:08 Download gff for BO11786.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12438531..12438841 493..803 100 -> Minus
arm_2L 12438902..12438988 406..492 100 -> Minus
arm_2L 12439054..12439230 229..405 100 -> Minus
arm_2L 12439296..12439464 60..228 100 -> Minus
arm_2L 12439521..12439567 11..59 91   Minus

BO11786.pep Sequence

Translation from 16 to 1891

> BO11786.pep
MAAQENTEISTKFSTLNVNAVEFVPSFSYNSVVNVAEEAAAVVVAAAAAE
ETADPGPASGSATPATTPDSVGSGGSTAGAAPPPPTAQGAGAAAPSAQPP
TSSSNSASPAPGSPATTPSAGAAAADPTPIDGLNPSDKIANNETDPADSW
DVDDAVITPEDEEVEDAEFTEGEATPKVSKKKVVKVEENRSKREHVNVVF
IGHVDAGKSTIGGQIMSLTGMVDKRTLEKYEREAREKSRESWYLSWALDT
NQEERDKGKTVEVGRAFFETDRKHFTILDAPGHKSFVPNMIGGAAQADLA
VLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLVNKMDDPTVNW
DQTRYNECKDKILPYLKKLGFNPAKDLTFMPCSGLSGYGLKDQIPETLCP
WYRGPAFIPFIDELPSLNRKSDGPFIMPIVDKYKDMGTVVMGKVESGTAR
KGQNLLVMPNRTQVAVDQLFSDDFEVTSVGPGENVKIKLKGIEEEDVSPG
FVLCDAANPIKTGKIFDAQVVILEHKSIICAGYSAVMHIHCAAEEVTVKA
LICLVDKKSGDKSKTRPRFVKQDQVAIMRIECSGMICLEQFKLFPQMGRF
TLRDENKTIAIGKVLKVVEASFLDH

BO11786.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:22:58
Subject Length Description Subject Range Query Range Score Percent Strand
Elf-PB 619 CG6382-PB 1..619 1..619 3197 100 Plus
Elf-PD 619 CG6382-PD 1..619 1..619 3197 100 Plus
Elf-PA 619 CG6382-PA 1..619 1..619 3197 100 Plus
Elf-PC 495 CG6382-PC 19..495 143..619 2483 99.8 Plus
HBS1-PB 670 CG1898-PB 149..669 85..617 806 34.6 Plus