Clone Sequence Records
BO11790.3prime Sequence
769 bp (767 high quality bases) assembled on 2006-04-19
> BO11790.3prime
ATGGTCTAGAAAGCTTGCCTTCTGACCCGCGTAGGCCAAGTCCTGGGCAT
CCTGCGGCTCTTGCGAGGATCGGGCCCAGGCATGAGGATCCCAGGCGGGC
GATGGGTGCTCCAGGTGCTCGATGTGCTCCACGGGCAGATCCACGTGGTG
ATCGATGTGGTGCTCCAGATGATGATCGATGTGATGCGGCACTATGTGCT
CGATGTGGTGGGGCACCACGTGCTCGATGTGGTGGGGCACCACGTGCTCA
ATGTGATGCGGCACCACATGATCCACGTGATGGGGATAGTGCACCACCTC
GTAGTTGACAATCTTGGGCTTGGCAATCTTGAAAATAACCAAGGCTCCAG
ACAGCACCAATGAGAGCAGGCCCAAGGTCATGGCCTTCCAGGTCTTTAGG
GCAATGAGTCCCAAGGCCAGTGGCACCAGCACAGTGGTCTTCAGTTTCAG
GCCCAGAAGGAAGGGCAGAACTGCCTTGCGGATCATGCCACGTCCTTCGT
TAGCAGCTGCCAGGGGAACTAATCCTCCCTGAGTAAGCGGATTCGACATG
AGGAAGTCGGGCACCAGGGAGCGGGCTTCCGAGGTGCGGAAGTACTCCGG
AGCCTGGATCCTCAGCGAGTGGCTGCCCAGATAGCTGTCGATGTCGTCGA
AGAGGCGCTCCTCCGGGTTCATGGATCGGGACTCGACCTTCTCCGCGGTA
CGGACAATCGACAGGCGCTCGGTGATGCGCACCTCCGGCTGCCGGAGGGC
AGAGTTGAACCACTGCAGG
BO11790.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:30:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1169-PA | 921 | Osi18-RA | 168..918 | 769..19 | 3755 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:22:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Osi18-RA | 1270 | CG1169-RA | 271..1021 | 769..19 | 3755 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:22:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6331083..6331560 | 496..19 | 2390 | 100 | Minus |
3R | 32079331 | 3R | 6330518..6330793 | 769..494 | 1380 | 100 | Minus |
3R | 32079331 | 3R | 6331297..6331379 | 258..176 | 250 | 86.7 | Minus |
3R | 32079331 | 3R | 6331321..6331403 | 282..200 | 250 | 86.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:22:14 has no hits.
BO11790.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:16:55 Download gff for
BO11790.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi18-PA | 168..921 | 16..769 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:44:44 Download gff for
BO11790.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1169-PA | 168..921 | 16..769 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 15:56:41 Download gff for
BO11790.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi18-RA | 271..1025 | 15..769 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:31:19 Download gff for
BO11790.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi18-RA | 271..1025 | 15..769 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:31:19 Download gff for
BO11790.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6330518..6330792 | 495..769 | 100 | -> | Minus |
3R | 6331085..6331564 | 15..494 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 15:56:41 Download gff for
BO11790.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2156240..2156514 | 495..769 | 100 | -> | Minus |
arm_3R | 2156807..2157286 | 15..494 | 99 | | Minus |
BO11790.5prime Sequence
880 bp (815 high quality bases) assembled on 2006-04-19
> BO11790.5prime
GAAGTTATCAGTCGACATGAAGAGCACCGCCGCTTGTCTGATAGTCGCCC
TTGCGGCGCTGTCCACCGCCCACTCGGCGCCCACCGAAGGTCAGGTGGCG
CCCCAGTCCGCCACGCAACTAGCCCTGGACATGTACCATGGCTGCCTTAA
GGACCTCAGTGTTTCCTGCGTGCGTCCCAAGGCCCTGCAGTGGTTCAACT
CTGCCCTCCGGCAGCCGGAGGTGCGCATCACCGAGCGCCTGTCGATTGTC
CGTACCGCGGAGAAGGTCGAGTCCCGATCCATGAACCCGGAGGAGCGCCT
CTTCGACGACATCGACAGCTATCTGGGCAGCCACTCGCTGAGGATCCAGG
CTCCGGAGTACTTCCGCACCTCGGAAGCCCGCTCCCTGGTGCCCGACTTC
CTCATGTCGAATCCGCTTACTCAGGGAGGATTAGTTCCCCTGGCAGCTGC
TAACGAAGGACGTGGCATGATCCGCAAGGCAGTTCTGCCCTTCCTTCTGG
GCCTGAAACTGAAGACCACTGTGCTGGTGCCACTGGCCTTGGGACTCATT
GCCCTAAAGACCTGGAAGGCCATGACCTTGGGCCTGCTCTCATTGGTGCT
GTCTGGAGCCTTGGTTATTTTCAAGATTGCCAAGCCCAAGATTGTCAACT
ACGAGGTGGTGCACTATCCCCATCACGTGGATCATGTGGTGCCGCATCAC
ATTGAGCACGTGGTGCCCCACCACATCGAGCACGTGGTGCCCCACCACAT
CGAGCACATAGTGCCGCATCACATCGATCATCATCTGGAGCACCACATCG
ATCACCACGTGGATCTGCCCGTGGAGCACATCGAGCACCTGGAGCACCCA
TCGCCCGCCTGGGATCCTCATGCCTGGGGC
BO11790.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:30:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1169-PA | 921 | Osi18-RA | 1..862 | 17..878 | 4310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:38:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Osi18-RA | 1270 | CG1169-RA | 104..965 | 17..878 | 4310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:38:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6330351..6330793 | 17..459 | 2215 | 100 | Plus |
3R | 32079331 | 3R | 6331083..6331504 | 457..878 | 2110 | 100 | Plus |
3R | 32079331 | 3R | 6331297..6331379 | 695..777 | 250 | 86.7 | Plus |
3R | 32079331 | 3R | 6331321..6331403 | 671..753 | 250 | 86.7 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:38:45 has no hits.
BO11790.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:16:56 Download gff for
BO11790.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi18-PA | 1..863 | 17..880 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:44:45 Download gff for
BO11790.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1169-PA | 1..863 | 17..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:45:40 Download gff for
BO11790.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi18-RA | 101..966 | 10..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:19:43 Download gff for
BO11790.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi18-RA | 101..966 | 10..880 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:19:43 Download gff for
BO11790.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6330348..6330792 | 10..458 | 99 | -> | Plus |
3R | 6331085..6331505 | 459..880 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:45:40 Download gff for
BO11790.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2156070..2156514 | 10..458 | 99 | -> | Plus |
arm_3R | 2156807..2157227 | 459..880 | 99 | | Plus |
BO11790.complete Sequence
952 bp assembled on 2006-10-11
GenBank Submission: FJ632198
> BO11790.complete
GAAGTTATCAGTCGACATGAAGAGCACCGCCGCTTGTCTGATAGTCGCCC
TTGCGGCGCTGTCCACCGCCCACTCGGCGCCCACCGAAGGTCAGGTGGCG
CCCCAGTCCGCCACGCAACTAGCCCTGGACATGTACCATGGCTGCCTTAA
GGACCTCAGTGTTTCCTGCGTGCGTCCCAAGGCCCTGCAGTGGTTCAACT
CTGCCCTCCGGCAGCCGGAGGTGCGCATCACCGAGCGCCTGTCGATTGTC
CGTACCGCGGAGAAGGTCGAGTCCCGATCCATGAACCCGGAGGAGCGCCT
CTTCGACGACATCGACAGCTATCTGGGCAGCCACTCGCTGAGGATCCAGG
CTCCGGAGTACTTCCGCACCTCGGAAGCCCGCTCCCTGGTGCCCGACTTC
CTCATGTCGAATCCGCTTACTCAGGGAGGATTAGTTCCCCTGGCAGCTGC
TAACGAAGGACGTGGCATGATCCGCAAGGCAGTTCTGCCCTTCCTTCTGG
GCCTGAAACTGAAGACCACTGTGCTGGTGCCACTGGCCTTGGGACTCATT
GCCCTAAAGACCTGGAAGGCCATGACCTTGGGCCTGCTCTCATTGGTGCT
GTCTGGAGCCTTGGTTATTTTCAAGATTGCCAAGCCCAAGATTGTCAACT
ACGAGGTGGTGCACTATCCCCATCACGTGGATCATGTGGTGCCGCATCAC
ATTGAGCACGTGGTGCCCCACCACATCGAGCACGTGGTGCCCCACCACAT
CGAGCACATAGTGCCGCATCACATCGATCATCATCTGGAGCACCACATCG
ATCACCACGTGGATCTGCCCGTGGAGCACATCGAGCACCTGGAGCACCCA
TCGCCCGCCTGGGATCCTCATGCCTGGGCCCGATCCTCGCAAGAGCCGCA
GGATGCCCAGGACTTGGCCTACGCGGGTCAGAAGGCAAGCTTTCTAGACC
AT
BO11790.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:20:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Osi18-RA | 921 | CG1169-PA | 1..918 | 17..934 | 4590 | 100 | Plus |
Osi18-RA | 921 | CG1169-PA | 655..737 | 695..777 | 250 | 86.7 | Plus |
Osi18-RA | 921 | CG1169-PA | 679..761 | 671..753 | 250 | 86.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:20:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Osi18-RA | 1270 | CG1169-RA | 104..1021 | 17..934 | 4590 | 100 | Plus |
Osi18-RA | 1270 | CG1169-RA | 758..840 | 695..777 | 250 | 86.7 | Plus |
Osi18-RA | 1270 | CG1169-RA | 782..864 | 671..753 | 250 | 86.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:20:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6331083..6331560 | 457..934 | 2390 | 100 | Plus |
3R | 32079331 | 3R | 6330351..6330793 | 17..459 | 2215 | 100 | Plus |
3R | 32079331 | 3R | 6331297..6331379 | 695..777 | 250 | 86.7 | Plus |
3R | 32079331 | 3R | 6331321..6331403 | 671..753 | 250 | 86.7 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:20:34 has no hits.
BO11790.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:49:34 Download gff for
BO11790.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi18-RA | 1..921 | 17..937 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:04:35 Download gff for
BO11790.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi18-RA | 99..1023 | 10..938 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:08:53 Download gff for
BO11790.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi18-RA | 104..1021 | 17..936 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:49:34 Download gff for
BO11790.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi18-RA | 99..1023 | 10..938 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:19:42 Download gff for
BO11790.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi18-RA | 104..1021 | 17..936 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:19:42 Download gff for
BO11790.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6331085..6331560 | 459..936 | 99 | | Plus |
3R | 6330351..6330792 | 17..458 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:08:53 Download gff for
BO11790.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2156073..2156514 | 17..458 | 100 | -> | Plus |
arm_3R | 2156807..2157282 | 459..936 | 99 | | Plus |
BO11790.pep Sequence
Translation from 16 to 952
> BO11790.pep
MKSTAACLIVALAALSTAHSAPTEGQVAPQSATQLALDMYHGCLKDLSVS
CVRPKALQWFNSALRQPEVRITERLSIVRTAEKVESRSMNPEERLFDDID
SYLGSHSLRIQAPEYFRTSEARSLVPDFLMSNPLTQGGLVPLAAANEGRG
MIRKAVLPFLLGLKLKTTVLVPLALGLIALKTWKAMTLGLLSLVLSGALV
IFKIAKPKIVNYEVVHYPHHVDHVVPHHIEHVVPHHIEHVVPHHIEHIVP
HHIDHHLEHHIDHHVDLPVEHIEHLEHPSPAWDPHAWARSSQEPQDAQDL
AYAGQKASFLDH
BO11790.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:31:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Osi18-PA | 306 | CG1169-PA | 1..306 | 1..306 | 1609 | 100 | Plus |
Osi9-PA | 233 | CG15592-PA | 6..206 | 7..220 | 213 | 29 | Plus |
Osi7-PA | 288 | CG1153-PA | 13..235 | 9..220 | 190 | 29.5 | Plus |
Osi19-PB | 257 | CG15189-PB | 7..225 | 8..227 | 178 | 25.2 | Plus |
Osi19-PA | 266 | CG15189-PA | 7..234 | 8..227 | 169 | 24.3 | Plus |