Clone BO11790 Report

Search the DGRC for BO11790

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:117
Well:90
Vector:pDNR-Dual
Associated Gene/TranscriptOsi18-RA
Protein status:BO11790.pep: validated full length
Sequenced Size:952

Clone Sequence Records

BO11790.3prime Sequence

769 bp (767 high quality bases) assembled on 2006-04-19

> BO11790.3prime
ATGGTCTAGAAAGCTTGCCTTCTGACCCGCGTAGGCCAAGTCCTGGGCAT
CCTGCGGCTCTTGCGAGGATCGGGCCCAGGCATGAGGATCCCAGGCGGGC
GATGGGTGCTCCAGGTGCTCGATGTGCTCCACGGGCAGATCCACGTGGTG
ATCGATGTGGTGCTCCAGATGATGATCGATGTGATGCGGCACTATGTGCT
CGATGTGGTGGGGCACCACGTGCTCGATGTGGTGGGGCACCACGTGCTCA
ATGTGATGCGGCACCACATGATCCACGTGATGGGGATAGTGCACCACCTC
GTAGTTGACAATCTTGGGCTTGGCAATCTTGAAAATAACCAAGGCTCCAG
ACAGCACCAATGAGAGCAGGCCCAAGGTCATGGCCTTCCAGGTCTTTAGG
GCAATGAGTCCCAAGGCCAGTGGCACCAGCACAGTGGTCTTCAGTTTCAG
GCCCAGAAGGAAGGGCAGAACTGCCTTGCGGATCATGCCACGTCCTTCGT
TAGCAGCTGCCAGGGGAACTAATCCTCCCTGAGTAAGCGGATTCGACATG
AGGAAGTCGGGCACCAGGGAGCGGGCTTCCGAGGTGCGGAAGTACTCCGG
AGCCTGGATCCTCAGCGAGTGGCTGCCCAGATAGCTGTCGATGTCGTCGA
AGAGGCGCTCCTCCGGGTTCATGGATCGGGACTCGACCTTCTCCGCGGTA
CGGACAATCGACAGGCGCTCGGTGATGCGCACCTCCGGCTGCCGGAGGGC
AGAGTTGAACCACTGCAGG

BO11790.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:30:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG1169-PA 921 Osi18-RA 168..918 769..19 3755 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:22:16
Subject Length Description Subject Range Query Range Score Percent Strand
Osi18-RA 1270 CG1169-RA 271..1021 769..19 3755 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:22:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6331083..6331560 496..19 2390 100 Minus
3R 32079331 3R 6330518..6330793 769..494 1380 100 Minus
3R 32079331 3R 6331297..6331379 258..176 250 86.7 Minus
3R 32079331 3R 6331321..6331403 282..200 250 86.7 Minus
Blast to na_te.dros performed on 2015-02-12 01:22:14 has no hits.

BO11790.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:16:55 Download gff for BO11790.3prime
Subject Subject Range Query Range Percent Splice Strand
Osi18-PA 168..921 16..769 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:44:44 Download gff for BO11790.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1169-PA 168..921 16..769 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 15:56:41 Download gff for BO11790.3prime
Subject Subject Range Query Range Percent Splice Strand
Osi18-RA 271..1025 15..769 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:31:19 Download gff for BO11790.3prime
Subject Subject Range Query Range Percent Splice Strand
Osi18-RA 271..1025 15..769 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:31:19 Download gff for BO11790.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 6330518..6330792 495..769 100 -> Minus
3R 6331085..6331564 15..494 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 15:56:41 Download gff for BO11790.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2156240..2156514 495..769 100 -> Minus
arm_3R 2156807..2157286 15..494 99   Minus

BO11790.5prime Sequence

880 bp (815 high quality bases) assembled on 2006-04-19

> BO11790.5prime
GAAGTTATCAGTCGACATGAAGAGCACCGCCGCTTGTCTGATAGTCGCCC
TTGCGGCGCTGTCCACCGCCCACTCGGCGCCCACCGAAGGTCAGGTGGCG
CCCCAGTCCGCCACGCAACTAGCCCTGGACATGTACCATGGCTGCCTTAA
GGACCTCAGTGTTTCCTGCGTGCGTCCCAAGGCCCTGCAGTGGTTCAACT
CTGCCCTCCGGCAGCCGGAGGTGCGCATCACCGAGCGCCTGTCGATTGTC
CGTACCGCGGAGAAGGTCGAGTCCCGATCCATGAACCCGGAGGAGCGCCT
CTTCGACGACATCGACAGCTATCTGGGCAGCCACTCGCTGAGGATCCAGG
CTCCGGAGTACTTCCGCACCTCGGAAGCCCGCTCCCTGGTGCCCGACTTC
CTCATGTCGAATCCGCTTACTCAGGGAGGATTAGTTCCCCTGGCAGCTGC
TAACGAAGGACGTGGCATGATCCGCAAGGCAGTTCTGCCCTTCCTTCTGG
GCCTGAAACTGAAGACCACTGTGCTGGTGCCACTGGCCTTGGGACTCATT
GCCCTAAAGACCTGGAAGGCCATGACCTTGGGCCTGCTCTCATTGGTGCT
GTCTGGAGCCTTGGTTATTTTCAAGATTGCCAAGCCCAAGATTGTCAACT
ACGAGGTGGTGCACTATCCCCATCACGTGGATCATGTGGTGCCGCATCAC
ATTGAGCACGTGGTGCCCCACCACATCGAGCACGTGGTGCCCCACCACAT
CGAGCACATAGTGCCGCATCACATCGATCATCATCTGGAGCACCACATCG
ATCACCACGTGGATCTGCCCGTGGAGCACATCGAGCACCTGGAGCACCCA
TCGCCCGCCTGGGATCCTCATGCCTGGGGC

BO11790.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:30:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG1169-PA 921 Osi18-RA 1..862 17..878 4310 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:38:49
Subject Length Description Subject Range Query Range Score Percent Strand
Osi18-RA 1270 CG1169-RA 104..965 17..878 4310 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:38:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6330351..6330793 17..459 2215 100 Plus
3R 32079331 3R 6331083..6331504 457..878 2110 100 Plus
3R 32079331 3R 6331297..6331379 695..777 250 86.7 Plus
3R 32079331 3R 6331321..6331403 671..753 250 86.7 Plus
Blast to na_te.dros performed on 2015-02-11 16:38:45 has no hits.

BO11790.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:16:56 Download gff for BO11790.5prime
Subject Subject Range Query Range Percent Splice Strand
Osi18-PA 1..863 17..880 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:44:45 Download gff for BO11790.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1169-PA 1..863 17..880 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:45:40 Download gff for BO11790.5prime
Subject Subject Range Query Range Percent Splice Strand
Osi18-RA 101..966 10..880 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:19:43 Download gff for BO11790.5prime
Subject Subject Range Query Range Percent Splice Strand
Osi18-RA 101..966 10..880 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:19:43 Download gff for BO11790.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 6330348..6330792 10..458 99 -> Plus
3R 6331085..6331505 459..880 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:45:40 Download gff for BO11790.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2156070..2156514 10..458 99 -> Plus
arm_3R 2156807..2157227 459..880 99   Plus

BO11790.complete Sequence

952 bp assembled on 2006-10-11

GenBank Submission: FJ632198

> BO11790.complete
GAAGTTATCAGTCGACATGAAGAGCACCGCCGCTTGTCTGATAGTCGCCC
TTGCGGCGCTGTCCACCGCCCACTCGGCGCCCACCGAAGGTCAGGTGGCG
CCCCAGTCCGCCACGCAACTAGCCCTGGACATGTACCATGGCTGCCTTAA
GGACCTCAGTGTTTCCTGCGTGCGTCCCAAGGCCCTGCAGTGGTTCAACT
CTGCCCTCCGGCAGCCGGAGGTGCGCATCACCGAGCGCCTGTCGATTGTC
CGTACCGCGGAGAAGGTCGAGTCCCGATCCATGAACCCGGAGGAGCGCCT
CTTCGACGACATCGACAGCTATCTGGGCAGCCACTCGCTGAGGATCCAGG
CTCCGGAGTACTTCCGCACCTCGGAAGCCCGCTCCCTGGTGCCCGACTTC
CTCATGTCGAATCCGCTTACTCAGGGAGGATTAGTTCCCCTGGCAGCTGC
TAACGAAGGACGTGGCATGATCCGCAAGGCAGTTCTGCCCTTCCTTCTGG
GCCTGAAACTGAAGACCACTGTGCTGGTGCCACTGGCCTTGGGACTCATT
GCCCTAAAGACCTGGAAGGCCATGACCTTGGGCCTGCTCTCATTGGTGCT
GTCTGGAGCCTTGGTTATTTTCAAGATTGCCAAGCCCAAGATTGTCAACT
ACGAGGTGGTGCACTATCCCCATCACGTGGATCATGTGGTGCCGCATCAC
ATTGAGCACGTGGTGCCCCACCACATCGAGCACGTGGTGCCCCACCACAT
CGAGCACATAGTGCCGCATCACATCGATCATCATCTGGAGCACCACATCG
ATCACCACGTGGATCTGCCCGTGGAGCACATCGAGCACCTGGAGCACCCA
TCGCCCGCCTGGGATCCTCATGCCTGGGCCCGATCCTCGCAAGAGCCGCA
GGATGCCCAGGACTTGGCCTACGCGGGTCAGAAGGCAAGCTTTCTAGACC
AT

BO11790.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:20:35
Subject Length Description Subject Range Query Range Score Percent Strand
Osi18-RA 921 CG1169-PA 1..918 17..934 4590 100 Plus
Osi18-RA 921 CG1169-PA 655..737 695..777 250 86.7 Plus
Osi18-RA 921 CG1169-PA 679..761 671..753 250 86.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:20:36
Subject Length Description Subject Range Query Range Score Percent Strand
Osi18-RA 1270 CG1169-RA 104..1021 17..934 4590 100 Plus
Osi18-RA 1270 CG1169-RA 758..840 695..777 250 86.7 Plus
Osi18-RA 1270 CG1169-RA 782..864 671..753 250 86.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:20:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6331083..6331560 457..934 2390 100 Plus
3R 32079331 3R 6330351..6330793 17..459 2215 100 Plus
3R 32079331 3R 6331297..6331379 695..777 250 86.7 Plus
3R 32079331 3R 6331321..6331403 671..753 250 86.7 Plus
Blast to na_te.dros performed on 2014-11-27 20:20:34 has no hits.

BO11790.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:49:34 Download gff for BO11790.complete
Subject Subject Range Query Range Percent Splice Strand
Osi18-RA 1..921 17..937 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:04:35 Download gff for BO11790.complete
Subject Subject Range Query Range Percent Splice Strand
Osi18-RA 99..1023 10..938 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:08:53 Download gff for BO11790.complete
Subject Subject Range Query Range Percent Splice Strand
Osi18-RA 104..1021 17..936 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:49:34 Download gff for BO11790.complete
Subject Subject Range Query Range Percent Splice Strand
Osi18-RA 99..1023 10..938 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:19:42 Download gff for BO11790.complete
Subject Subject Range Query Range Percent Splice Strand
Osi18-RA 104..1021 17..936 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:19:42 Download gff for BO11790.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6331085..6331560 459..936 99   Plus
3R 6330351..6330792 17..458 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:08:53 Download gff for BO11790.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2156073..2156514 17..458 100 -> Plus
arm_3R 2156807..2157282 459..936 99   Plus

BO11790.pep Sequence

Translation from 16 to 952

> BO11790.pep
MKSTAACLIVALAALSTAHSAPTEGQVAPQSATQLALDMYHGCLKDLSVS
CVRPKALQWFNSALRQPEVRITERLSIVRTAEKVESRSMNPEERLFDDID
SYLGSHSLRIQAPEYFRTSEARSLVPDFLMSNPLTQGGLVPLAAANEGRG
MIRKAVLPFLLGLKLKTTVLVPLALGLIALKTWKAMTLGLLSLVLSGALV
IFKIAKPKIVNYEVVHYPHHVDHVVPHHIEHVVPHHIEHVVPHHIEHIVP
HHIDHHLEHHIDHHVDLPVEHIEHLEHPSPAWDPHAWARSSQEPQDAQDL
AYAGQKASFLDH

BO11790.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:31:13
Subject Length Description Subject Range Query Range Score Percent Strand
Osi18-PA 306 CG1169-PA 1..306 1..306 1609 100 Plus
Osi9-PA 233 CG15592-PA 6..206 7..220 213 29 Plus
Osi7-PA 288 CG1153-PA 13..235 9..220 190 29.5 Plus
Osi19-PB 257 CG15189-PB 7..225 8..227 178 25.2 Plus
Osi19-PA 266 CG15189-PA 7..234 8..227 169 24.3 Plus