Clone Sequence Records
BO11792.3prime Sequence
704 bp (703 high quality bases) assembled on 2006-04-19
> BO11792.3prime
ATGGTCTAGAAAGCTTGCGGAGTCAAAAGCGACCACCTGTTGAATGCATT
GTTCGACTATGCTAAAAAGTATTTCCGAAGTCTTAACACTACTAAATGGC
CTATCTACAGGAGGTACATGGACAAACAGGCTTCGTTTTCTGTCCATATC
GAGCGATTTCAGATAGATATAGCCGCAGAGAAAGTCACCCACATTTTTGG
ATGCCTTTGTGGCGCTCAGGGATTTGAGATTATCATTATGTGTCGGCTGT
TGTGTGGGTCCCACACAATCGGCGCAATTCTCATTTACAACCGCCACAAT
CTTATCCACATCTAATTCGGTCTTCAAGACATTTGCATGTCCATTGTTGG
GTAGTTCGCAAGTGCCGTTGGCCAGTTTTTTATCACAATTATCAGCTCGG
CGGAACTTGTGATTGTACGCCAGCTTCTCGATGTATACACACTTGGCAAC
GCCCGAAACACCGACATGGATAACAAGATATGGCTGGCGTTTCCAAATCT
CCGCCACCGCCTCGTCCACAGCCCCGTATTCCACCGAAACCAACCGCTTT
TCCAGATCATATTCTATGCCATCGTGAGTTAGGATTTCCGGCAGCAGTTT
CACAGCTTCCCAGCTGGCGTTGACCGCTTCGTGACCGAGAAATGGACCAA
ATCCGGAGACTACAATGAGCTTTCGATCTGACGACGCCATGTCGACTGAT
AACT
BO11792.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:30:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32147-PA | 675 | CG32147-RA | 1..672 | 690..19 | 3360 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:27:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32147-RA | 911 | CG32147-RA | 51..722 | 690..19 | 3360 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:27:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15143252..15143710 | 19..477 | 2295 | 100 | Plus |
3L | 28110227 | 3L | 15143797..15144009 | 478..690 | 1065 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:27:39 has no hits.
BO11792.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:16:59 Download gff for
BO11792.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32147-PA | 1..675 | 16..690 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:44:49 Download gff for
BO11792.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32147-PA | 1..675 | 16..690 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:56:26 Download gff for
BO11792.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32147-RA | 51..728 | 11..690 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:02:00 Download gff for
BO11792.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32147-RA | 51..728 | 11..690 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:02:00 Download gff for
BO11792.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15143797..15144009 | 478..690 | 100 | | Plus |
3L | 15143246..15143710 | 11..477 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:56:26 Download gff for
BO11792.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15136346..15136810 | 11..477 | 99 | <- | Plus |
arm_3L | 15136897..15137109 | 478..690 | 100 | | Plus |
BO11792.5prime Sequence
704 bp (703 high quality bases) assembled on 2006-04-19
> BO11792.5prime
GAAGTTATCAGTCGACATGGCGTCGTCAGATCGAAAGCTCATTGTAGTCT
CCGGATTTGGTCCATTTCTCGGTCACGAAGCGGTCAACGCCAGCTGGGAA
GCTGTGAAACTGCTGCCGGAAATCCTAACTCACGATGGCATAGAATATGA
TCTGGAAAAGCGGTTGGTTTCGGTGGAATACGGGGCTGTGGACGAGGCGG
TGGCGGAGATTTGGAAACGCCAGCCATATCTTGTTATCCATGTCGGTGTT
TCGGGCGTTGCCAAGTGTGTATACATCGAGAAGCTGGCGTACAATCACAA
GTTCCGCCGAGCTGATAATTGTGATAAAAAACTGGCCAACGGCACTTGCG
AACTACCCAACAATGGACATGCAAATGTCTTGAAGACCGAATTAGATGTG
GATAAGATTGTGGCGGTTGTAAATGAGAATTGCGCCGATTGTGTGGGACC
CACACAACAGCCGACACATAATGATAATCTCAAATCCCTGAGCGCCACAA
AGGCATCCAAAAATGTGGGTGACTTTCTCTGCGGCTATATCTATCTGAAA
TCGCTCGATATGGACAGAAAACGAAGCCTGTTTGTCCATGTACCTCCTGT
AGATAGGCCATTTAGTAGTGTTAAGACTTCGGAAATACTTTTTAGCATAG
TCGAACAATGCATTCAACAGGTGGTCGCTTTTGACTCCGCAAGCTTTCTA
GACC
BO11792.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:30:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32147-PA | 675 | CG32147-RA | 1..672 | 17..688 | 3360 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:50:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32147-RA | 911 | CG32147-RA | 51..722 | 17..688 | 3360 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:50:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15143252..15143710 | 688..230 | 2295 | 100 | Minus |
3L | 28110227 | 3L | 15143797..15144009 | 229..17 | 1065 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 09:50:38 has no hits.
BO11792.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:17:00 Download gff for
BO11792.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32147-PA | 1..675 | 17..691 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:44:51 Download gff for
BO11792.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32147-PA | 1..675 | 17..691 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:46:40 Download gff for
BO11792.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32147-RA | 51..728 | 17..696 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:18:54 Download gff for
BO11792.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32147-RA | 51..728 | 17..696 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:18:54 Download gff for
BO11792.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15143246..15143710 | 230..696 | 99 | <- | Minus |
3L | 15143797..15144009 | 17..229 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:46:40 Download gff for
BO11792.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15136346..15136810 | 230..696 | 99 | <- | Minus |
arm_3L | 15136897..15137109 | 17..229 | 100 | | Minus |
BO11792.complete Sequence
706 bp assembled on 2006-10-11
GenBank Submission: FJ638687
> BO11792.complete
GAAGTTATCAGTCGACATGGCGTCGTCAGATCGAAAGCTCATTGTAGTCT
CCGGATTTGGTCCATTTCTCGGTCACGAAGCGGTCAACGCCAGCTGGGAA
GCTGTGAAACTGCTGCCGGAAATCCTAACTCACGATGGCATAGAATATGA
TCTGGAAAAGCGGTTGGTTTCGGTGGAATACGGGGCTGTGGACGAGGCGG
TGGCGGAGATTTGGAAACGCCAGCCATATCTTGTTATCCATGTCGGTGTT
TCGGGCGTTGCCAAGTGTGTATACATCGAGAAGCTGGCGTACAATCACAA
GTTCCGCCGAGCTGATAATTGTGATAAAAAACTGGCCAACGGCACTTGCG
AACTACCCAACAATGGACATGCAAATGTCTTGAAGACCGAATTAGATGTG
GATAAGATTGTGGCGGTTGTAAATGAGAATTGCGCCGATTGTGTGGGACC
CACACAACAGCCGACACATAATGATAATCTCAAATCCCTGAGCGCCACAA
AGGCATCCAAAAATGTGGGTGACTTTCTCTGCGGCTATATCTATCTGAAA
TCGCTCGATATGGACAGAAAACGAAGCCTGTTTGTCCATGTACCTCCTGT
AGATAGGCCATTTAGTAGTGTTAAGACTTCGGAAATACTTTTTAGCATAG
TCGAACAATGCATTCAACAGGTGGTCGCTTTTGACTCCGCAAGCTTTCTA
GACCAT
BO11792.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:40:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32147-RA | 675 | CG32147-PA | 1..672 | 17..688 | 3360 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:40:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32147-RA | 911 | CG32147-RA | 51..722 | 17..688 | 3360 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:40:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15143252..15143710 | 688..230 | 2295 | 100 | Minus |
3L | 28110227 | 3L | 15143797..15144009 | 229..17 | 1065 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:40:07 has no hits.
BO11792.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:49:36 Download gff for
BO11792.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32147-RA | 1..675 | 17..691 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:04:39 Download gff for
BO11792.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32147-RA | 17..694 | 17..696 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:31:41 Download gff for
BO11792.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32147-RA | 51..722 | 17..690 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:49:36 Download gff for
BO11792.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32147-RA | 17..694 | 17..696 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:23:49 Download gff for
BO11792.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32147-RA | 51..722 | 17..690 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:23:49 Download gff for
BO11792.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15143249..15143710 | 230..690 | 99 | <- | Minus |
3L | 15143797..15144009 | 17..229 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:31:41 Download gff for
BO11792.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15136349..15136810 | 230..690 | 99 | <- | Minus |
arm_3L | 15136897..15137109 | 17..229 | 100 | | Minus |
BO11792.pep Sequence
Translation from 16 to 706
> BO11792.pep
MASSDRKLIVVSGFGPFLGHEAVNASWEAVKLLPEILTHDGIEYDLEKRL
VSVEYGAVDEAVAEIWKRQPYLVIHVGVSGVAKCVYIEKLAYNHKFRRAD
NCDKKLANGTCELPNNGHANVLKTELDVDKIVAVVNENCADCVGPTQQPT
HNDNLKSLSATKASKNVGDFLCGYIYLKSLDMDRKRSLFVHVPPVDRPFS
SVKTSEILFSIVEQCIQQVVAFDSASFLDH
BO11792.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:31:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32147-PA | 224 | CG32147-PA | 1..224 | 1..224 | 1169 | 100 | Plus |