Clone BO11792 Report

Search the DGRC for BO11792

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:117
Well:92
Vector:pDNR-Dual
Associated Gene/TranscriptCG32147-RA
Protein status:BO11792.pep: validated full length
Sequenced Size:706

Clone Sequence Records

BO11792.3prime Sequence

704 bp (703 high quality bases) assembled on 2006-04-19

> BO11792.3prime
ATGGTCTAGAAAGCTTGCGGAGTCAAAAGCGACCACCTGTTGAATGCATT
GTTCGACTATGCTAAAAAGTATTTCCGAAGTCTTAACACTACTAAATGGC
CTATCTACAGGAGGTACATGGACAAACAGGCTTCGTTTTCTGTCCATATC
GAGCGATTTCAGATAGATATAGCCGCAGAGAAAGTCACCCACATTTTTGG
ATGCCTTTGTGGCGCTCAGGGATTTGAGATTATCATTATGTGTCGGCTGT
TGTGTGGGTCCCACACAATCGGCGCAATTCTCATTTACAACCGCCACAAT
CTTATCCACATCTAATTCGGTCTTCAAGACATTTGCATGTCCATTGTTGG
GTAGTTCGCAAGTGCCGTTGGCCAGTTTTTTATCACAATTATCAGCTCGG
CGGAACTTGTGATTGTACGCCAGCTTCTCGATGTATACACACTTGGCAAC
GCCCGAAACACCGACATGGATAACAAGATATGGCTGGCGTTTCCAAATCT
CCGCCACCGCCTCGTCCACAGCCCCGTATTCCACCGAAACCAACCGCTTT
TCCAGATCATATTCTATGCCATCGTGAGTTAGGATTTCCGGCAGCAGTTT
CACAGCTTCCCAGCTGGCGTTGACCGCTTCGTGACCGAGAAATGGACCAA
ATCCGGAGACTACAATGAGCTTTCGATCTGACGACGCCATGTCGACTGAT
AACT

BO11792.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:30:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG32147-PA 675 CG32147-RA 1..672 690..19 3360 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:27:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG32147-RA 911 CG32147-RA 51..722 690..19 3360 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:27:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15143252..15143710 19..477 2295 100 Plus
3L 28110227 3L 15143797..15144009 478..690 1065 100 Plus
Blast to na_te.dros performed on 2015-02-10 22:27:39 has no hits.

BO11792.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:16:59 Download gff for BO11792.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32147-PA 1..675 16..690 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:44:49 Download gff for BO11792.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32147-PA 1..675 16..690 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:56:26 Download gff for BO11792.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32147-RA 51..728 11..690 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:02:00 Download gff for BO11792.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32147-RA 51..728 11..690 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:02:00 Download gff for BO11792.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 15143797..15144009 478..690 100   Plus
3L 15143246..15143710 11..477 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:56:26 Download gff for BO11792.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15136346..15136810 11..477 99 <- Plus
arm_3L 15136897..15137109 478..690 100   Plus

BO11792.5prime Sequence

704 bp (703 high quality bases) assembled on 2006-04-19

> BO11792.5prime
GAAGTTATCAGTCGACATGGCGTCGTCAGATCGAAAGCTCATTGTAGTCT
CCGGATTTGGTCCATTTCTCGGTCACGAAGCGGTCAACGCCAGCTGGGAA
GCTGTGAAACTGCTGCCGGAAATCCTAACTCACGATGGCATAGAATATGA
TCTGGAAAAGCGGTTGGTTTCGGTGGAATACGGGGCTGTGGACGAGGCGG
TGGCGGAGATTTGGAAACGCCAGCCATATCTTGTTATCCATGTCGGTGTT
TCGGGCGTTGCCAAGTGTGTATACATCGAGAAGCTGGCGTACAATCACAA
GTTCCGCCGAGCTGATAATTGTGATAAAAAACTGGCCAACGGCACTTGCG
AACTACCCAACAATGGACATGCAAATGTCTTGAAGACCGAATTAGATGTG
GATAAGATTGTGGCGGTTGTAAATGAGAATTGCGCCGATTGTGTGGGACC
CACACAACAGCCGACACATAATGATAATCTCAAATCCCTGAGCGCCACAA
AGGCATCCAAAAATGTGGGTGACTTTCTCTGCGGCTATATCTATCTGAAA
TCGCTCGATATGGACAGAAAACGAAGCCTGTTTGTCCATGTACCTCCTGT
AGATAGGCCATTTAGTAGTGTTAAGACTTCGGAAATACTTTTTAGCATAG
TCGAACAATGCATTCAACAGGTGGTCGCTTTTGACTCCGCAAGCTTTCTA
GACC

BO11792.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:30:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG32147-PA 675 CG32147-RA 1..672 17..688 3360 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:50:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG32147-RA 911 CG32147-RA 51..722 17..688 3360 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:50:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15143252..15143710 688..230 2295 100 Minus
3L 28110227 3L 15143797..15144009 229..17 1065 100 Minus
Blast to na_te.dros performed on 2015-02-13 09:50:38 has no hits.

BO11792.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:17:00 Download gff for BO11792.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32147-PA 1..675 17..691 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:44:51 Download gff for BO11792.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32147-PA 1..675 17..691 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:46:40 Download gff for BO11792.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32147-RA 51..728 17..696 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:18:54 Download gff for BO11792.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32147-RA 51..728 17..696 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:18:54 Download gff for BO11792.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 15143246..15143710 230..696 99 <- Minus
3L 15143797..15144009 17..229 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:46:40 Download gff for BO11792.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15136346..15136810 230..696 99 <- Minus
arm_3L 15136897..15137109 17..229 100   Minus

BO11792.complete Sequence

706 bp assembled on 2006-10-11

GenBank Submission: FJ638687

> BO11792.complete
GAAGTTATCAGTCGACATGGCGTCGTCAGATCGAAAGCTCATTGTAGTCT
CCGGATTTGGTCCATTTCTCGGTCACGAAGCGGTCAACGCCAGCTGGGAA
GCTGTGAAACTGCTGCCGGAAATCCTAACTCACGATGGCATAGAATATGA
TCTGGAAAAGCGGTTGGTTTCGGTGGAATACGGGGCTGTGGACGAGGCGG
TGGCGGAGATTTGGAAACGCCAGCCATATCTTGTTATCCATGTCGGTGTT
TCGGGCGTTGCCAAGTGTGTATACATCGAGAAGCTGGCGTACAATCACAA
GTTCCGCCGAGCTGATAATTGTGATAAAAAACTGGCCAACGGCACTTGCG
AACTACCCAACAATGGACATGCAAATGTCTTGAAGACCGAATTAGATGTG
GATAAGATTGTGGCGGTTGTAAATGAGAATTGCGCCGATTGTGTGGGACC
CACACAACAGCCGACACATAATGATAATCTCAAATCCCTGAGCGCCACAA
AGGCATCCAAAAATGTGGGTGACTTTCTCTGCGGCTATATCTATCTGAAA
TCGCTCGATATGGACAGAAAACGAAGCCTGTTTGTCCATGTACCTCCTGT
AGATAGGCCATTTAGTAGTGTTAAGACTTCGGAAATACTTTTTAGCATAG
TCGAACAATGCATTCAACAGGTGGTCGCTTTTGACTCCGCAAGCTTTCTA
GACCAT

BO11792.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:40:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG32147-RA 675 CG32147-PA 1..672 17..688 3360 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:40:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG32147-RA 911 CG32147-RA 51..722 17..688 3360 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:40:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15143252..15143710 688..230 2295 100 Minus
3L 28110227 3L 15143797..15144009 229..17 1065 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:40:07 has no hits.

BO11792.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:49:36 Download gff for BO11792.complete
Subject Subject Range Query Range Percent Splice Strand
CG32147-RA 1..675 17..691 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:04:39 Download gff for BO11792.complete
Subject Subject Range Query Range Percent Splice Strand
CG32147-RA 17..694 17..696 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:31:41 Download gff for BO11792.complete
Subject Subject Range Query Range Percent Splice Strand
CG32147-RA 51..722 17..690 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:49:36 Download gff for BO11792.complete
Subject Subject Range Query Range Percent Splice Strand
CG32147-RA 17..694 17..696 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:23:49 Download gff for BO11792.complete
Subject Subject Range Query Range Percent Splice Strand
CG32147-RA 51..722 17..690 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:23:49 Download gff for BO11792.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15143249..15143710 230..690 99 <- Minus
3L 15143797..15144009 17..229 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:31:41 Download gff for BO11792.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15136349..15136810 230..690 99 <- Minus
arm_3L 15136897..15137109 17..229 100   Minus

BO11792.pep Sequence

Translation from 16 to 706

> BO11792.pep
MASSDRKLIVVSGFGPFLGHEAVNASWEAVKLLPEILTHDGIEYDLEKRL
VSVEYGAVDEAVAEIWKRQPYLVIHVGVSGVAKCVYIEKLAYNHKFRRAD
NCDKKLANGTCELPNNGHANVLKTELDVDKIVAVVNENCADCVGPTQQPT
HNDNLKSLSATKASKNVGDFLCGYIYLKSLDMDRKRSLFVHVPPVDRPFS
SVKTSEILFSIVEQCIQQVVAFDSASFLDH

BO11792.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:31:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG32147-PA 224 CG32147-PA 1..224 1..224 1169 100 Plus