Clone BO11793 Report

Search the DGRC for BO11793

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:117
Well:93
Vector:pDNR-Dual
Associated Gene/TranscriptCG13618-RA
Protein status:BO11793.pep: validated full length
Sequenced Size:790

Clone Sequence Records

BO11793.3prime Sequence

788 bp (762 high quality bases) assembled on 2006-04-19

> BO11793.3prime
ATGGTCTAGAAAGCTTGCACTTAAGAATATATTATCGAAGGGCACTTTCT
CGAACAGTTTGTTGGACAGCTCCCTGAAGATGATGCCGAAACTCTTGGCA
TATCCCACCTTTAGTTCGTTGAACACCGTCTCCCAGTTTTCGTTAAGGAA
TCGATTCATACCATCCGACAGAGTTTTGTCGTTGAATAGATTCTCGAAGT
TCATGTACACCCTCTTGGGATCGAAGGACACCCGGTAGTCCTTTAGTCGC
ATGTACTTGACGCCATCCTTCTCAAAGGGTTCGCCGATCAGGCGATGCTC
GATCTTGGTGTTGATCAGCGTGACATTGGCCTTTCCATGTCCCGTGATGG
GCAGCAGAAGGATGCGGCCGGACATCTCGTAGTCGCCAATCATCTCTATG
CGATCCGTTCGGCTATCACAGATAATCAAGTGCTTATCCAGATCGGTTCT
GTACCGCTGGATCTTGCTGGTGGAGATCATGTCGTGCACCTTCACATTCT
TCAAGGCCTGGCGCAGATTTATTGGCGCATTGCCGGCGTCTATAACGAGT
TTCTTTACGGTCAGCGGTTCGAGGGGCGGGATGCCAAATTCCCTATTGCC
CGCCTTCAGCTGCTGTATCGCCACATTGACGGCATCCACCAGGCATTTGT
CGAAGTTCGCGTCCCGTTTGCACTTGGGAAAGCCTTCGGGCAATTCTTGC
GCAGCCGTTACAGTAAGTTCCTGCGCAACCGCAGCGATTAGCAGCAGCAT
TAGTAGTAGCGAGTATTTTGACATGTCGACTGATAACT

BO11793.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:30:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG13618-PA 759 CG13618-RA 1..756 774..19 3780 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 17:33:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG13618-RA 1021 CG13618-RA 180..935 774..19 3780 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 17:33:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24527015..24527447 451..19 2165 100 Minus
3R 32079331 3R 24526750..24526901 600..449 760 100 Minus
3R 32079331 3R 24526599..24526689 689..599 455 100 Minus
3R 32079331 3R 24524973..24525057 774..690 425 100 Minus
Blast to na_te.dros performed on 2015-02-03 17:33:42 has no hits.

BO11793.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:17:02 Download gff for BO11793.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13618-PA 1..759 15..774 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:44:52 Download gff for BO11793.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13618-PA 1..759 15..774 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:36:04 Download gff for BO11793.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13618-RA 180..943 8..774 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 19:02:47 Download gff for BO11793.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13618-RA 180..943 8..774 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 19:02:47 Download gff for BO11793.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 24524968..24525057 690..780 95 -> Minus
3R 24526599..24526688 600..689 100 -> Minus
3R 24526751..24526901 449..599 100 -> Minus
3R 24527018..24527455 8..448 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:36:04 Download gff for BO11793.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20350690..20350779 690..780 95 -> Minus
arm_3R 20352321..20352410 600..689 100 -> Minus
arm_3R 20352473..20352623 449..599 100 -> Minus
arm_3R 20352740..20353177 8..448 98   Minus

BO11793.5prime Sequence

776 bp (726 high quality bases) assembled on 2006-04-19

> BO11793.5prime
GAAGTTATCAGTCGACATGTCAAAATACTCGCTACTACTAATGCTGCTGC
TAATCGCTGCGGTTGCGCAGGAACTTACTGTAACGGCTGCGCAAGAATTG
CCCGAAGGCTTTCCCAAGTGCAAACGGGACGCGAACTTCGACAAATGCCT
GGTGGATGCCGTCAATGTGGCGATACAGCAGCTGAAGGCGGGCAATAGGG
AATTTGGCATCCCGCCCCTCGAACCGCTGACCGTAAAGAAACTCGTTATA
GACGCCGGCAATGCGCCAATAAATCTGCGCCAGGCCTTGAAGAATGTGAA
GGTGCACGACATGATCTCCACCAGCAAGATCCAGCGGTACAGAACCGATC
TGGATAAGCACTTGATTATCTGTGATAGCCGAACGGATCGCATAGAGATG
ATTGGCGACTACGAGATGTCCGGCCGCATCCTTCTGCTGCCCATCACGGG
ACATGGAAAGGCCAATGTCACGCTGATCAACACCAAGATCGAGCATCGCC
TGATCGGCGAACCCTTTGAGAAGGATGGCGTCAAGTACATGCGACTAAAG
GACTACCGGGTGTCCTTCGATCCCAAGAGGGTGTACATGAACTTCGAGAA
TCTATTCAACGACAAAACTCTGTCGGATGGTATGAATCGATTCCTTAACG
AAAACTGGGAGACGGTGTTCAACGAACTAAAGGTGGGATATGCCAAGAGT
TTCGGCATCATCTTCAGGGAGCTGTCCAACAAACTGTTCGAGAAAGTGCC
CTTCGATAATATATTCTTAAGTGCAA

BO11793.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:30:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG13618-PA 759 CG13618-RA 1..756 17..772 3780 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:52:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG13618-RA 1021 CG13618-RA 180..935 17..772 3780 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:52:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24527015..24527447 340..772 2165 100 Plus
3R 32079331 3R 24526750..24526901 191..342 760 100 Plus
3R 32079331 3R 24526599..24526689 102..192 455 100 Plus
3R 32079331 3R 24524973..24525057 17..101 425 100 Plus
Blast to na_te.dros performed on 2015-02-13 09:52:44 has no hits.

BO11793.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:17:03 Download gff for BO11793.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13618-PA 1..756 17..774 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:44:54 Download gff for BO11793.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13618-PA 1..756 17..774 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:47:11 Download gff for BO11793.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13618-RA 180..935 17..774 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:24:58 Download gff for BO11793.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13618-RA 180..935 17..774 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:24:58 Download gff for BO11793.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 24524968..24525057 11..101 95 -> Plus
3R 24526599..24526688 102..191 100 -> Plus
3R 24526751..24526901 192..342 100 -> Plus
3R 24527018..24527447 343..774 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:47:11 Download gff for BO11793.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20352321..20352410 102..191 100 -> Plus
arm_3R 20352473..20352623 192..342 100 -> Plus
arm_3R 20350690..20350779 11..101 95 -> Plus
arm_3R 20352740..20353169 343..774 99   Plus

BO11793.complete Sequence

790 bp assembled on 2006-10-11

GenBank Submission: FJ632200

> BO11793.complete
GAAGTTATCAGTCGACATGTCAAAATACTCGCTACTACTAATGCTGCTGC
TAATCGCTGCGGTTGCGCAGGAACTTACTGTAACGGCTGCGCAAGAATTG
CCCGAAGGCTTTCCCAAGTGCAAACGGGACGCGAACTTCGACAAATGCCT
GGTGGATGCCGTCAATGTGGCGATACAGCAGCTGAAGGCGGGCAATAGGG
AATTTGGCATCCCGCCCCTCGAACCGCTGACCGTAAAGAAACTCGTTATA
GACGCCGGCAATGCGCCAATAAATCTGCGCCAGGCCTTGAAGAATGTGAA
GGTGCACGACATGATCTCCACCAGCAAGATCCAGCGGTACAGAACCGATC
TGGATAAGCACTTGATTATCTGTGATAGCCGAACGGATCGCATAGAGATG
ATTGGCGACTACGAGATGTCCGGCCGCATCCTTCTGCTGCCCATCACGGG
ACATGGAAAGGCCAATGTCACGCTGATCAACACCAAGATCGAGCATCGCC
TGATCGGCGAACCCTTTGAGAAGGATGGCGTCAAGTACATGCGACTAAAG
GACTACCGGGTGTCCTTCGATCCCAAGAGGGTGTACATGAACTTCGAGAA
TCTATTCAACGACAAAACTCTGTCGGATGGTATGAATCGATTCCTTAACG
AAAACTGGGAGACGGTGTTCAACGAACTAAAGGTGGGATATGCCAAGAGT
TTCGGCATCATCTTCAGGGAGCTGTCCAACAAACTGTTCGAGAAAGTGCC
CTTCGATAATATATTCTTAAGTGCAAGCTTTCTAGACCAT

BO11793.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 21:04:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG13618-RA 759 CG13618-PA 1..756 17..772 3780 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:04:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG13618-RA 1021 CG13618-RA 180..935 17..772 3780 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:04:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24527015..24527447 340..772 2165 100 Plus
3R 32079331 3R 24526750..24526901 191..342 760 100 Plus
3R 32079331 3R 24526599..24526689 102..192 455 100 Plus
3R 32079331 3R 24524973..24525057 17..101 425 100 Plus
Blast to na_te.dros performed on 2014-11-27 21:04:34 has no hits.

BO11793.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:49:37 Download gff for BO11793.complete
Subject Subject Range Query Range Percent Splice Strand
CG13618-RA 1..759 17..776 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:04:41 Download gff for BO11793.complete
Subject Subject Range Query Range Percent Splice Strand
CG13618-RA 174..937 17..783 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:16:11 Download gff for BO11793.complete
Subject Subject Range Query Range Percent Splice Strand
CG13618-RA 180..935 17..774 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:49:37 Download gff for BO11793.complete
Subject Subject Range Query Range Percent Splice Strand
CG13618-RA 174..937 17..783 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:34:09 Download gff for BO11793.complete
Subject Subject Range Query Range Percent Splice Strand
CG13618-RA 180..935 17..774 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:34:09 Download gff for BO11793.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24526751..24526901 192..342 100 -> Plus
3R 24524973..24525057 17..101 100 -> Plus
3R 24526599..24526688 102..191 100 -> Plus
3R 24527018..24527447 343..774 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:16:11 Download gff for BO11793.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20350695..20350779 17..101 100 -> Plus
arm_3R 20352321..20352410 102..191 100 -> Plus
arm_3R 20352473..20352623 192..342 100 -> Plus
arm_3R 20352740..20353169 343..774 99   Plus

BO11793.pep Sequence

Translation from 16 to 790

> BO11793.pep
MSKYSLLLMLLLIAAVAQELTVTAAQELPEGFPKCKRDANFDKCLVDAVN
VAIQQLKAGNREFGIPPLEPLTVKKLVIDAGNAPINLRQALKNVKVHDMI
STSKIQRYRTDLDKHLIICDSRTDRIEMIGDYEMSGRILLLPITGHGKAN
VTLINTKIEHRLIGEPFEKDGVKYMRLKDYRVSFDPKRVYMNFENLFNDK
TLSDGMNRFLNENWETVFNELKVGYAKSFGIIFRELSNKLFEKVPFDNIF
LSASFLDH

BO11793.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:31:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG13618-PA 252 CG13618-PA 1..252 1..252 1294 100 Plus
CG11854-PB 250 CG11854-PB 3..249 6..251 327 32.4 Plus
CG10407-PB 259 CG10407-PB 1..256 1..249 326 30.7 Plus
CG10407-PA 259 CG10407-PA 1..256 1..249 326 30.7 Plus
to-PB 249 CG11853-PB 1..249 9..254 283 29 Plus