Clone Sequence Records
BO11793.3prime Sequence
788 bp (762 high quality bases) assembled on 2006-04-19
> BO11793.3prime
ATGGTCTAGAAAGCTTGCACTTAAGAATATATTATCGAAGGGCACTTTCT
CGAACAGTTTGTTGGACAGCTCCCTGAAGATGATGCCGAAACTCTTGGCA
TATCCCACCTTTAGTTCGTTGAACACCGTCTCCCAGTTTTCGTTAAGGAA
TCGATTCATACCATCCGACAGAGTTTTGTCGTTGAATAGATTCTCGAAGT
TCATGTACACCCTCTTGGGATCGAAGGACACCCGGTAGTCCTTTAGTCGC
ATGTACTTGACGCCATCCTTCTCAAAGGGTTCGCCGATCAGGCGATGCTC
GATCTTGGTGTTGATCAGCGTGACATTGGCCTTTCCATGTCCCGTGATGG
GCAGCAGAAGGATGCGGCCGGACATCTCGTAGTCGCCAATCATCTCTATG
CGATCCGTTCGGCTATCACAGATAATCAAGTGCTTATCCAGATCGGTTCT
GTACCGCTGGATCTTGCTGGTGGAGATCATGTCGTGCACCTTCACATTCT
TCAAGGCCTGGCGCAGATTTATTGGCGCATTGCCGGCGTCTATAACGAGT
TTCTTTACGGTCAGCGGTTCGAGGGGCGGGATGCCAAATTCCCTATTGCC
CGCCTTCAGCTGCTGTATCGCCACATTGACGGCATCCACCAGGCATTTGT
CGAAGTTCGCGTCCCGTTTGCACTTGGGAAAGCCTTCGGGCAATTCTTGC
GCAGCCGTTACAGTAAGTTCCTGCGCAACCGCAGCGATTAGCAGCAGCAT
TAGTAGTAGCGAGTATTTTGACATGTCGACTGATAACT
BO11793.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:30:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13618-PA | 759 | CG13618-RA | 1..756 | 774..19 | 3780 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 17:33:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13618-RA | 1021 | CG13618-RA | 180..935 | 774..19 | 3780 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 17:33:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24527015..24527447 | 451..19 | 2165 | 100 | Minus |
3R | 32079331 | 3R | 24526750..24526901 | 600..449 | 760 | 100 | Minus |
3R | 32079331 | 3R | 24526599..24526689 | 689..599 | 455 | 100 | Minus |
3R | 32079331 | 3R | 24524973..24525057 | 774..690 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 17:33:42 has no hits.
BO11793.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:17:02 Download gff for
BO11793.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13618-PA | 1..759 | 15..774 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:44:52 Download gff for
BO11793.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13618-PA | 1..759 | 15..774 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:36:04 Download gff for
BO11793.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13618-RA | 180..943 | 8..774 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 19:02:47 Download gff for
BO11793.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13618-RA | 180..943 | 8..774 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 19:02:47 Download gff for
BO11793.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24524968..24525057 | 690..780 | 95 | -> | Minus |
3R | 24526599..24526688 | 600..689 | 100 | -> | Minus |
3R | 24526751..24526901 | 449..599 | 100 | -> | Minus |
3R | 24527018..24527455 | 8..448 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:36:04 Download gff for
BO11793.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20350690..20350779 | 690..780 | 95 | -> | Minus |
arm_3R | 20352321..20352410 | 600..689 | 100 | -> | Minus |
arm_3R | 20352473..20352623 | 449..599 | 100 | -> | Minus |
arm_3R | 20352740..20353177 | 8..448 | 98 | | Minus |
BO11793.5prime Sequence
776 bp (726 high quality bases) assembled on 2006-04-19
> BO11793.5prime
GAAGTTATCAGTCGACATGTCAAAATACTCGCTACTACTAATGCTGCTGC
TAATCGCTGCGGTTGCGCAGGAACTTACTGTAACGGCTGCGCAAGAATTG
CCCGAAGGCTTTCCCAAGTGCAAACGGGACGCGAACTTCGACAAATGCCT
GGTGGATGCCGTCAATGTGGCGATACAGCAGCTGAAGGCGGGCAATAGGG
AATTTGGCATCCCGCCCCTCGAACCGCTGACCGTAAAGAAACTCGTTATA
GACGCCGGCAATGCGCCAATAAATCTGCGCCAGGCCTTGAAGAATGTGAA
GGTGCACGACATGATCTCCACCAGCAAGATCCAGCGGTACAGAACCGATC
TGGATAAGCACTTGATTATCTGTGATAGCCGAACGGATCGCATAGAGATG
ATTGGCGACTACGAGATGTCCGGCCGCATCCTTCTGCTGCCCATCACGGG
ACATGGAAAGGCCAATGTCACGCTGATCAACACCAAGATCGAGCATCGCC
TGATCGGCGAACCCTTTGAGAAGGATGGCGTCAAGTACATGCGACTAAAG
GACTACCGGGTGTCCTTCGATCCCAAGAGGGTGTACATGAACTTCGAGAA
TCTATTCAACGACAAAACTCTGTCGGATGGTATGAATCGATTCCTTAACG
AAAACTGGGAGACGGTGTTCAACGAACTAAAGGTGGGATATGCCAAGAGT
TTCGGCATCATCTTCAGGGAGCTGTCCAACAAACTGTTCGAGAAAGTGCC
CTTCGATAATATATTCTTAAGTGCAA
BO11793.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:30:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13618-PA | 759 | CG13618-RA | 1..756 | 17..772 | 3780 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:52:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13618-RA | 1021 | CG13618-RA | 180..935 | 17..772 | 3780 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:52:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24527015..24527447 | 340..772 | 2165 | 100 | Plus |
3R | 32079331 | 3R | 24526750..24526901 | 191..342 | 760 | 100 | Plus |
3R | 32079331 | 3R | 24526599..24526689 | 102..192 | 455 | 100 | Plus |
3R | 32079331 | 3R | 24524973..24525057 | 17..101 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 09:52:44 has no hits.
BO11793.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:17:03 Download gff for
BO11793.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13618-PA | 1..756 | 17..774 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:44:54 Download gff for
BO11793.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13618-PA | 1..756 | 17..774 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:47:11 Download gff for
BO11793.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13618-RA | 180..935 | 17..774 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:24:58 Download gff for
BO11793.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13618-RA | 180..935 | 17..774 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:24:58 Download gff for
BO11793.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24524968..24525057 | 11..101 | 95 | -> | Plus |
3R | 24526599..24526688 | 102..191 | 100 | -> | Plus |
3R | 24526751..24526901 | 192..342 | 100 | -> | Plus |
3R | 24527018..24527447 | 343..774 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:47:11 Download gff for
BO11793.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20352321..20352410 | 102..191 | 100 | -> | Plus |
arm_3R | 20352473..20352623 | 192..342 | 100 | -> | Plus |
arm_3R | 20350690..20350779 | 11..101 | 95 | -> | Plus |
arm_3R | 20352740..20353169 | 343..774 | 99 | | Plus |
BO11793.complete Sequence
790 bp assembled on 2006-10-11
GenBank Submission: FJ632200
> BO11793.complete
GAAGTTATCAGTCGACATGTCAAAATACTCGCTACTACTAATGCTGCTGC
TAATCGCTGCGGTTGCGCAGGAACTTACTGTAACGGCTGCGCAAGAATTG
CCCGAAGGCTTTCCCAAGTGCAAACGGGACGCGAACTTCGACAAATGCCT
GGTGGATGCCGTCAATGTGGCGATACAGCAGCTGAAGGCGGGCAATAGGG
AATTTGGCATCCCGCCCCTCGAACCGCTGACCGTAAAGAAACTCGTTATA
GACGCCGGCAATGCGCCAATAAATCTGCGCCAGGCCTTGAAGAATGTGAA
GGTGCACGACATGATCTCCACCAGCAAGATCCAGCGGTACAGAACCGATC
TGGATAAGCACTTGATTATCTGTGATAGCCGAACGGATCGCATAGAGATG
ATTGGCGACTACGAGATGTCCGGCCGCATCCTTCTGCTGCCCATCACGGG
ACATGGAAAGGCCAATGTCACGCTGATCAACACCAAGATCGAGCATCGCC
TGATCGGCGAACCCTTTGAGAAGGATGGCGTCAAGTACATGCGACTAAAG
GACTACCGGGTGTCCTTCGATCCCAAGAGGGTGTACATGAACTTCGAGAA
TCTATTCAACGACAAAACTCTGTCGGATGGTATGAATCGATTCCTTAACG
AAAACTGGGAGACGGTGTTCAACGAACTAAAGGTGGGATATGCCAAGAGT
TTCGGCATCATCTTCAGGGAGCTGTCCAACAAACTGTTCGAGAAAGTGCC
CTTCGATAATATATTCTTAAGTGCAAGCTTTCTAGACCAT
BO11793.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 21:04:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13618-RA | 759 | CG13618-PA | 1..756 | 17..772 | 3780 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:04:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13618-RA | 1021 | CG13618-RA | 180..935 | 17..772 | 3780 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:04:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24527015..24527447 | 340..772 | 2165 | 100 | Plus |
3R | 32079331 | 3R | 24526750..24526901 | 191..342 | 760 | 100 | Plus |
3R | 32079331 | 3R | 24526599..24526689 | 102..192 | 455 | 100 | Plus |
3R | 32079331 | 3R | 24524973..24525057 | 17..101 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:04:34 has no hits.
BO11793.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:49:37 Download gff for
BO11793.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13618-RA | 1..759 | 17..776 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:04:41 Download gff for
BO11793.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13618-RA | 174..937 | 17..783 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:16:11 Download gff for
BO11793.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13618-RA | 180..935 | 17..774 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:49:37 Download gff for
BO11793.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13618-RA | 174..937 | 17..783 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:34:09 Download gff for
BO11793.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13618-RA | 180..935 | 17..774 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:34:09 Download gff for
BO11793.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24526751..24526901 | 192..342 | 100 | -> | Plus |
3R | 24524973..24525057 | 17..101 | 100 | -> | Plus |
3R | 24526599..24526688 | 102..191 | 100 | -> | Plus |
3R | 24527018..24527447 | 343..774 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:16:11 Download gff for
BO11793.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20350695..20350779 | 17..101 | 100 | -> | Plus |
arm_3R | 20352321..20352410 | 102..191 | 100 | -> | Plus |
arm_3R | 20352473..20352623 | 192..342 | 100 | -> | Plus |
arm_3R | 20352740..20353169 | 343..774 | 99 | | Plus |
BO11793.pep Sequence
Translation from 16 to 790
> BO11793.pep
MSKYSLLLMLLLIAAVAQELTVTAAQELPEGFPKCKRDANFDKCLVDAVN
VAIQQLKAGNREFGIPPLEPLTVKKLVIDAGNAPINLRQALKNVKVHDMI
STSKIQRYRTDLDKHLIICDSRTDRIEMIGDYEMSGRILLLPITGHGKAN
VTLINTKIEHRLIGEPFEKDGVKYMRLKDYRVSFDPKRVYMNFENLFNDK
TLSDGMNRFLNENWETVFNELKVGYAKSFGIIFRELSNKLFEKVPFDNIF
LSASFLDH
BO11793.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:31:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13618-PA | 252 | CG13618-PA | 1..252 | 1..252 | 1294 | 100 | Plus |
CG11854-PB | 250 | CG11854-PB | 3..249 | 6..251 | 327 | 32.4 | Plus |
CG10407-PB | 259 | CG10407-PB | 1..256 | 1..249 | 326 | 30.7 | Plus |
CG10407-PA | 259 | CG10407-PA | 1..256 | 1..249 | 326 | 30.7 | Plus |
to-PB | 249 | CG11853-PB | 1..249 | 9..254 | 283 | 29 | Plus |