Clone BO11794 Report

Search the DGRC for BO11794

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:117
Well:94
Vector:pDNR-Dual
Associated Gene/TranscriptCG10907-RA
Protein status:BO11794.pep: validated full length
Sequenced Size:1540

Clone Sequence Records

BO11794.3prime Sequence

885 bp (804 high quality bases) assembled on 2006-04-19

> BO11794.3prime
ATGGTCTAGAAAGCTTGCAAAGTCACGTTTACTGCTTTTTGATTTACCCG
AACTCGATTTACTAGAGCCAGTTTCGCCCCGCTTACGTTTATTTAGAGGA
TTTCGTGGATCGTAGGCATCGTACCAATCGTCGCCCTTTTTATTGGCATC
CTTAGCTAAAACCGGAGTCGTACTATTAAAATTTAAGGTATGCGACAACC
AATCGTCGCCGATTATTTCCTGTTCTACTACGCGATCGTCTATATCCTTC
GGTTCCGATTCGCCATCATCAGAGCTTGACTTTTGCTTCAAGTTATCCAG
TTTCGTTCGGAACTTGGAGAGTAGGCTCAATGTAAATGCCTCTCTTGACT
GTCCCTTCGGTTGAAGCTTTACTTTGGCGGTGTACTTCTCCTTAGACTCT
ATAAAATCGTTAATATAATGGTTTTCGCTGGACCCCTTGATTTCATTGGA
CTTTGCTGCTTTCTCTTGTCCATTAACTAGTTTGTCTTTGCTCTGCTTAT
CCATTTGATACTGCTTTTTCAGAGAAGCGATTTCCTCACGGATCTTGGAT
TTTTCCTCCGAGACTTTTCGACTTTGTTCCTCCTCCCGTGTTAACAAAAC
ATCCTCGTCATCCTCAGAATCAGACTTTTCCTCCACTGGCTGAACTTTTT
TGTCTGCTCCACTCTTTGATCTCTTAGACAGTTTCATTTTGATGAGATCC
GAACTAGCAGTGGACGGTTTATCCTTGACACTGTCCTCAGGGCAATCGTC
GGACAAGTGCTCCTCGATGTCGGCTTTTTCTACTTTGGGTACACGAATGG
GCTCCTTGCTGAGTTTTGGATCATCTGTGACGTCGTGCAGGGATTTCGCC
TTACCGGGCGTCTGTTTAACATAGACGTTGGTCTC

BO11794.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:30:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG10907-PA 1509 CG10907-RA 668..1506 857..19 4195 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:48:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG10907-RA 1610 CG10907-RA 713..1579 885..19 4290 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:47:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11795061..11795387 345..19 1635 100 Minus
3L 28110227 3L 11794403..11794737 885..551 1630 99.1 Minus
3L 28110227 3L 11794797..11795003 550..344 1035 100 Minus
Blast to na_te.dros performed on 2015-02-10 22:48:01 has no hits.

BO11794.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:17:03 Download gff for BO11794.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10907-PA 640..1509 15..885 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:44:55 Download gff for BO11794.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10907-PA 640..1509 15..885 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:50:03 Download gff for BO11794.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10907-RA 713..1584 14..885 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:08:14 Download gff for BO11794.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10907-RA 713..1584 14..885 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:08:14 Download gff for BO11794.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 11794797..11795003 344..550 100 -> Minus
3L 11795063..11795392 14..343 99   Minus
3L 11794403..11794737 551..885 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:50:03 Download gff for BO11794.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11787503..11787837 551..885 99 -> Minus
arm_3L 11787897..11788103 344..550 100 -> Minus
arm_3L 11788163..11788492 14..343 99   Minus

BO11794.5prime Sequence

866 bp (796 high quality bases) assembled on 2006-04-19

> BO11794.5prime
GAAGTTATCAGTCGACATGAGCAATATTTACATCCAAGAACCACCCACGT
CGGGAAAGGTGCTCCTTAAGACCACTGTGGGCGACATAGACATCGAGTTG
TGGGCACGGGAGTGTCCGAAGGCGTGCCGCAACTTTGTGCAACTCTGCCT
AGAGGGCTACTACAAGAACACCGAATTCCACCGGCTGGTCAAGGGCTTTA
TTGTCCAGGGAGGCGATCCGAATGGCGACGGCACCGGCGGCGAGTCCATA
TACGGACAGCCCTTCAAGGATGAGTTCCACTCCCGACTCCGGTACACGCG
TCGTGGCCTCGTCGGCATGGCAAATTCTGGAAAGGATGACAATGGCTCAC
AGTTCTTCTTCACATTTGCTCCGACACCGGAGCTGCAGAATAAGAACACG
CTTTTTGGAAAGATCACCGGCGATACCATCTACAACATGCTCAAGCTGGA
AGATGGCATTGTTGACCACCAGGAAAGACCGATGCACGCACATCGCATCG
TTTCTACGGAAGTCCTCTCGAACCCATTCGATGATATCGTTCCTCGTATT
CTCTCCCAACCTTCCACGAAGAGCAAAAAGACTAAGAAGGAGCGACAAGG
AGTCAAAAACTTCGGACTGCTTTCTTTTGGCGAAGAAGCCGAAGGTGACG
AGGAGGAGACCAACGTCTATGTTAAACAGAACGCCGGTAAGGCGAAATCC
CTGCACGACGTCACAGATGATCCAAAACTCAGCAAGGAGCCCATTCGTGT
ACCCAAAGTAGAAAAAGCCGACATCGAGGAGCACTTGTCCGACGATTGCC
CTGAGGACAGTGTCAAGGATAAACCGTCCACTGCTAGTTCGGATCTCATC
AAAATGAAACTGTCTA

BO11794.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:30:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG10907-PA 1509 CG10907-RA 1..850 17..866 4250 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:21:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG10907-RA 1610 CG10907-RA 74..923 17..866 4250 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:21:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11793587..11794176 17..606 2950 100 Plus
3L 28110227 3L 11794354..11794613 607..866 1300 100 Plus
Blast to na_te.dros performed on 2015-02-12 13:21:33 has no hits.

BO11794.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:17:04 Download gff for BO11794.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10907-PA 1..849 17..865 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:44:56 Download gff for BO11794.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10907-PA 1..849 17..865 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:26:09 Download gff for BO11794.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10907-RA 74..922 17..865 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:04:01 Download gff for BO11794.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10907-RA 74..922 17..865 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 17:04:01 Download gff for BO11794.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 11794354..11794612 607..865 100   Plus
3L 11793587..11794176 17..606 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:26:09 Download gff for BO11794.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11787454..11787712 607..865 100   Plus
arm_3L 11786687..11787276 17..606 100 -> Plus

BO11794.complete Sequence

1540 bp assembled on 2006-10-11

GenBank Submission: FJ632201

> BO11794.complete
GAAGTTATCAGTCGACATGAGCAATATTTACATCCAAGAACCACCCACGT
CGGGAAAGGTGCTCCTTAAGACCACTGTGGGCGACATAGACATCGAGTTG
TGGGCACGGGAGTGTCCGAAGGCGTGCCGCAACTTTGTGCAACTCTGCCT
AGAGGGCTACTACAAGAACACCGAATTCCACCGGCTGGTCAAGGGCTTTA
TTGTCCAGGGAGGCGATCCGAATGGCGACGGCACCGGCGGCGAGTCCATA
TACGGACAGCCCTTCAAGGATGAGTTCCACTCCCGACTCCGGTACACGCG
TCGTGGCCTCGTCGGCATGGCAAATTCTGGAAAGGATGACAATGGCTCAC
AGTTCTTCTTCACATTTGCTCCGACACCGGAGCTGCAGAATAAGAACACG
CTTTTTGGAAAGATCACCGGCGATACCATCTACAACATGCTCAAGCTGGA
AGATGGCATTGTTGACCACCAGGAAAGACCGATGCACGCACATCGCATCG
TTTCTACGGAAGTCCTCTCGAACCCATTCGATGATATCGTTCCTCGTATT
CTCTCCCAACCTTCCACGAAGAGCAAAAAGACTAAGAAGGAGCGACAAGG
AGTCAAAAACTTCGGACTGCTTTCTTTTGGCGAAGAAGCCGAAGGTGACG
AGGAGGAGACCAACGTCTATGTTAAACAGAACGCCGGTAAGGCGAAATCC
CTGCACGACGTCACAGATGATCCAAAACTCAGCAAGGAGCCCATTCGTGT
ACCCAAAGTAGAAAAAGCCGACATCGAGGAGCACTTGTCCGACGATTGCC
CTGAGGACAGTGTCAAGGATAAACCGTCCACTGCTAGTTCGGATCTCATC
AAAATGAAACTGTCTAAGAGATCAAAGAGTGGAGCAGACAAAAAAGTTCA
GCCAGTGGAGGAAAAGTCTGATTCTGAGGATGACGAGGATGTTTTGTTAA
CACGGGAGGAGGAACAAAGTCGAAAAGTCTCGGAGGAAAAATCCAAGATC
CGTGAGGAAATCGCTTCTCTGAAAAAGCAGTATCAAATGGATAAGCAGAG
CAAAGACAAACTAGTTAATGGACAAGAGAAAGCAGCAAAGTCCAATGAAA
TCAAGGGGTCCAGCGAAAACCATTATATTAACGATTTTATAGAGTCTAAG
GAGAAGTACACCGCCAAAGTAAAGCTTCAACCGAAGGGACAGTCAAGAGA
GGCATTTACATTGAGCCTACTCTCCAAGTTCCGAACGAAACTGGATAACT
TGAAGCAAAAGTCAAGCTCTGATGATGGCGAATCGGAACCGAAGGATATA
GACGATCGCGTAGTAGAACAGGAAATAATCGGCGACGATTGGTTGTCGCA
TACCTTAAATTTTAATAGTACGACTCCGGTTTTAGCTAAGGATGCCAATA
AAAAGGGCGACGATTGGTACGATGCCTACGATCCACGAAATCCTCTAAAT
AAACGTAAGCGGGGCGAAACTGGCTCTAGTAAATCGAGTTCGGGTAAATC
AAAAAGCAGTAAACGTGACTTTGCAAGCTTTCTAGACCAT

BO11794.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:54:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG10907-RA 1509 CG10907-PA 1..1506 17..1522 7530 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:54:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG10907-RA 1610 CG10907-RA 74..1579 17..1522 7530 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:54:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11793587..11794176 17..606 2950 100 Plus
3L 28110227 3L 11794354..11794737 607..990 1920 100 Plus
3L 28110227 3L 11795061..11795387 1196..1522 1635 100 Plus
3L 28110227 3L 11794797..11795003 991..1197 1035 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:54:25 has no hits.

BO11794.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:49:23 Download gff for BO11794.complete
Subject Subject Range Query Range Percent Splice Strand
CG10907-RA 1..1509 17..1526 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:04:22 Download gff for BO11794.complete
Subject Subject Range Query Range Percent Splice Strand
CG10907-RA 44..1554 17..1527 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:41 Download gff for BO11794.complete
Subject Subject Range Query Range Percent Splice Strand
CG10907-RA 74..1579 17..1524 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:49:23 Download gff for BO11794.complete
Subject Subject Range Query Range Percent Splice Strand
CG10907-RA 44..1554 17..1527 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:29:50 Download gff for BO11794.complete
Subject Subject Range Query Range Percent Splice Strand
CG10907-RA 74..1579 17..1524 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:29:50 Download gff for BO11794.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11793587..11794176 17..606 100 -> Plus
3L 11794354..11794737 607..990 100 -> Plus
3L 11794797..11795003 991..1197 100 -> Plus
3L 11795063..11795387 1198..1524 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:41 Download gff for BO11794.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11787897..11788103 991..1197 100 -> Plus
arm_3L 11786687..11787276 17..606 100 -> Plus
arm_3L 11787454..11787837 607..990 100 -> Plus
arm_3L 11788163..11788487 1198..1524 99   Plus

BO11794.pep Sequence

Translation from 16 to 1540

> BO11794.pep
MSNIYIQEPPTSGKVLLKTTVGDIDIELWARECPKACRNFVQLCLEGYYK
NTEFHRLVKGFIVQGGDPNGDGTGGESIYGQPFKDEFHSRLRYTRRGLVG
MANSGKDDNGSQFFFTFAPTPELQNKNTLFGKITGDTIYNMLKLEDGIVD
HQERPMHAHRIVSTEVLSNPFDDIVPRILSQPSTKSKKTKKERQGVKNFG
LLSFGEEAEGDEEETNVYVKQNAGKAKSLHDVTDDPKLSKEPIRVPKVEK
ADIEEHLSDDCPEDSVKDKPSTASSDLIKMKLSKRSKSGADKKVQPVEEK
SDSEDDEDVLLTREEEQSRKVSEEKSKIREEIASLKKQYQMDKQSKDKLV
NGQEKAAKSNEIKGSSENHYINDFIESKEKYTAKVKLQPKGQSREAFTLS
LLSKFRTKLDNLKQKSSSDDGESEPKDIDDRVVEQEIIGDDWLSHTLNFN
STTPVLAKDANKKGDDWYDAYDPRNPLNKRKRGETGSSKSSSGKSKSSKR
DFASFLDH

BO11794.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:48:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG10907-PA 502 CG10907-PA 1..502 1..502 2604 100 Plus
CG7747-PA 517 CG7747-PA 280..506 13..250 416 37.9 Plus
Cypl-PA 176 CG13892-PA 23..173 15..166 379 46.4 Plus
CG11777-PA 161 CG11777-PA 3..121 15..133 333 52.9 Plus
CG3511-PB 637 CG3511-PB 484..602 15..133 327 52.9 Plus