Clone Sequence Records
BO11794.3prime Sequence
885 bp (804 high quality bases) assembled on 2006-04-19
> BO11794.3prime
ATGGTCTAGAAAGCTTGCAAAGTCACGTTTACTGCTTTTTGATTTACCCG
AACTCGATTTACTAGAGCCAGTTTCGCCCCGCTTACGTTTATTTAGAGGA
TTTCGTGGATCGTAGGCATCGTACCAATCGTCGCCCTTTTTATTGGCATC
CTTAGCTAAAACCGGAGTCGTACTATTAAAATTTAAGGTATGCGACAACC
AATCGTCGCCGATTATTTCCTGTTCTACTACGCGATCGTCTATATCCTTC
GGTTCCGATTCGCCATCATCAGAGCTTGACTTTTGCTTCAAGTTATCCAG
TTTCGTTCGGAACTTGGAGAGTAGGCTCAATGTAAATGCCTCTCTTGACT
GTCCCTTCGGTTGAAGCTTTACTTTGGCGGTGTACTTCTCCTTAGACTCT
ATAAAATCGTTAATATAATGGTTTTCGCTGGACCCCTTGATTTCATTGGA
CTTTGCTGCTTTCTCTTGTCCATTAACTAGTTTGTCTTTGCTCTGCTTAT
CCATTTGATACTGCTTTTTCAGAGAAGCGATTTCCTCACGGATCTTGGAT
TTTTCCTCCGAGACTTTTCGACTTTGTTCCTCCTCCCGTGTTAACAAAAC
ATCCTCGTCATCCTCAGAATCAGACTTTTCCTCCACTGGCTGAACTTTTT
TGTCTGCTCCACTCTTTGATCTCTTAGACAGTTTCATTTTGATGAGATCC
GAACTAGCAGTGGACGGTTTATCCTTGACACTGTCCTCAGGGCAATCGTC
GGACAAGTGCTCCTCGATGTCGGCTTTTTCTACTTTGGGTACACGAATGG
GCTCCTTGCTGAGTTTTGGATCATCTGTGACGTCGTGCAGGGATTTCGCC
TTACCGGGCGTCTGTTTAACATAGACGTTGGTCTC
BO11794.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:30:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10907-PA | 1509 | CG10907-RA | 668..1506 | 857..19 | 4195 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:48:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10907-RA | 1610 | CG10907-RA | 713..1579 | 885..19 | 4290 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:47:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11795061..11795387 | 345..19 | 1635 | 100 | Minus |
3L | 28110227 | 3L | 11794403..11794737 | 885..551 | 1630 | 99.1 | Minus |
3L | 28110227 | 3L | 11794797..11795003 | 550..344 | 1035 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:48:01 has no hits.
BO11794.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:17:03 Download gff for
BO11794.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10907-PA | 640..1509 | 15..885 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:44:55 Download gff for
BO11794.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10907-PA | 640..1509 | 15..885 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:50:03 Download gff for
BO11794.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10907-RA | 713..1584 | 14..885 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:08:14 Download gff for
BO11794.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10907-RA | 713..1584 | 14..885 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:08:14 Download gff for
BO11794.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11794797..11795003 | 344..550 | 100 | -> | Minus |
3L | 11795063..11795392 | 14..343 | 99 | | Minus |
3L | 11794403..11794737 | 551..885 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:50:03 Download gff for
BO11794.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11787503..11787837 | 551..885 | 99 | -> | Minus |
arm_3L | 11787897..11788103 | 344..550 | 100 | -> | Minus |
arm_3L | 11788163..11788492 | 14..343 | 99 | | Minus |
BO11794.5prime Sequence
866 bp (796 high quality bases) assembled on 2006-04-19
> BO11794.5prime
GAAGTTATCAGTCGACATGAGCAATATTTACATCCAAGAACCACCCACGT
CGGGAAAGGTGCTCCTTAAGACCACTGTGGGCGACATAGACATCGAGTTG
TGGGCACGGGAGTGTCCGAAGGCGTGCCGCAACTTTGTGCAACTCTGCCT
AGAGGGCTACTACAAGAACACCGAATTCCACCGGCTGGTCAAGGGCTTTA
TTGTCCAGGGAGGCGATCCGAATGGCGACGGCACCGGCGGCGAGTCCATA
TACGGACAGCCCTTCAAGGATGAGTTCCACTCCCGACTCCGGTACACGCG
TCGTGGCCTCGTCGGCATGGCAAATTCTGGAAAGGATGACAATGGCTCAC
AGTTCTTCTTCACATTTGCTCCGACACCGGAGCTGCAGAATAAGAACACG
CTTTTTGGAAAGATCACCGGCGATACCATCTACAACATGCTCAAGCTGGA
AGATGGCATTGTTGACCACCAGGAAAGACCGATGCACGCACATCGCATCG
TTTCTACGGAAGTCCTCTCGAACCCATTCGATGATATCGTTCCTCGTATT
CTCTCCCAACCTTCCACGAAGAGCAAAAAGACTAAGAAGGAGCGACAAGG
AGTCAAAAACTTCGGACTGCTTTCTTTTGGCGAAGAAGCCGAAGGTGACG
AGGAGGAGACCAACGTCTATGTTAAACAGAACGCCGGTAAGGCGAAATCC
CTGCACGACGTCACAGATGATCCAAAACTCAGCAAGGAGCCCATTCGTGT
ACCCAAAGTAGAAAAAGCCGACATCGAGGAGCACTTGTCCGACGATTGCC
CTGAGGACAGTGTCAAGGATAAACCGTCCACTGCTAGTTCGGATCTCATC
AAAATGAAACTGTCTA
BO11794.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:30:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10907-PA | 1509 | CG10907-RA | 1..850 | 17..866 | 4250 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:21:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10907-RA | 1610 | CG10907-RA | 74..923 | 17..866 | 4250 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:21:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11793587..11794176 | 17..606 | 2950 | 100 | Plus |
3L | 28110227 | 3L | 11794354..11794613 | 607..866 | 1300 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 13:21:33 has no hits.
BO11794.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:17:04 Download gff for
BO11794.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10907-PA | 1..849 | 17..865 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:44:56 Download gff for
BO11794.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10907-PA | 1..849 | 17..865 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:26:09 Download gff for
BO11794.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10907-RA | 74..922 | 17..865 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:04:01 Download gff for
BO11794.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10907-RA | 74..922 | 17..865 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 17:04:01 Download gff for
BO11794.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11794354..11794612 | 607..865 | 100 | | Plus |
3L | 11793587..11794176 | 17..606 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:26:09 Download gff for
BO11794.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11787454..11787712 | 607..865 | 100 | | Plus |
arm_3L | 11786687..11787276 | 17..606 | 100 | -> | Plus |
BO11794.complete Sequence
1540 bp assembled on 2006-10-11
GenBank Submission: FJ632201
> BO11794.complete
GAAGTTATCAGTCGACATGAGCAATATTTACATCCAAGAACCACCCACGT
CGGGAAAGGTGCTCCTTAAGACCACTGTGGGCGACATAGACATCGAGTTG
TGGGCACGGGAGTGTCCGAAGGCGTGCCGCAACTTTGTGCAACTCTGCCT
AGAGGGCTACTACAAGAACACCGAATTCCACCGGCTGGTCAAGGGCTTTA
TTGTCCAGGGAGGCGATCCGAATGGCGACGGCACCGGCGGCGAGTCCATA
TACGGACAGCCCTTCAAGGATGAGTTCCACTCCCGACTCCGGTACACGCG
TCGTGGCCTCGTCGGCATGGCAAATTCTGGAAAGGATGACAATGGCTCAC
AGTTCTTCTTCACATTTGCTCCGACACCGGAGCTGCAGAATAAGAACACG
CTTTTTGGAAAGATCACCGGCGATACCATCTACAACATGCTCAAGCTGGA
AGATGGCATTGTTGACCACCAGGAAAGACCGATGCACGCACATCGCATCG
TTTCTACGGAAGTCCTCTCGAACCCATTCGATGATATCGTTCCTCGTATT
CTCTCCCAACCTTCCACGAAGAGCAAAAAGACTAAGAAGGAGCGACAAGG
AGTCAAAAACTTCGGACTGCTTTCTTTTGGCGAAGAAGCCGAAGGTGACG
AGGAGGAGACCAACGTCTATGTTAAACAGAACGCCGGTAAGGCGAAATCC
CTGCACGACGTCACAGATGATCCAAAACTCAGCAAGGAGCCCATTCGTGT
ACCCAAAGTAGAAAAAGCCGACATCGAGGAGCACTTGTCCGACGATTGCC
CTGAGGACAGTGTCAAGGATAAACCGTCCACTGCTAGTTCGGATCTCATC
AAAATGAAACTGTCTAAGAGATCAAAGAGTGGAGCAGACAAAAAAGTTCA
GCCAGTGGAGGAAAAGTCTGATTCTGAGGATGACGAGGATGTTTTGTTAA
CACGGGAGGAGGAACAAAGTCGAAAAGTCTCGGAGGAAAAATCCAAGATC
CGTGAGGAAATCGCTTCTCTGAAAAAGCAGTATCAAATGGATAAGCAGAG
CAAAGACAAACTAGTTAATGGACAAGAGAAAGCAGCAAAGTCCAATGAAA
TCAAGGGGTCCAGCGAAAACCATTATATTAACGATTTTATAGAGTCTAAG
GAGAAGTACACCGCCAAAGTAAAGCTTCAACCGAAGGGACAGTCAAGAGA
GGCATTTACATTGAGCCTACTCTCCAAGTTCCGAACGAAACTGGATAACT
TGAAGCAAAAGTCAAGCTCTGATGATGGCGAATCGGAACCGAAGGATATA
GACGATCGCGTAGTAGAACAGGAAATAATCGGCGACGATTGGTTGTCGCA
TACCTTAAATTTTAATAGTACGACTCCGGTTTTAGCTAAGGATGCCAATA
AAAAGGGCGACGATTGGTACGATGCCTACGATCCACGAAATCCTCTAAAT
AAACGTAAGCGGGGCGAAACTGGCTCTAGTAAATCGAGTTCGGGTAAATC
AAAAAGCAGTAAACGTGACTTTGCAAGCTTTCTAGACCAT
BO11794.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:54:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10907-RA | 1509 | CG10907-PA | 1..1506 | 17..1522 | 7530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:54:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10907-RA | 1610 | CG10907-RA | 74..1579 | 17..1522 | 7530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:54:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11793587..11794176 | 17..606 | 2950 | 100 | Plus |
3L | 28110227 | 3L | 11794354..11794737 | 607..990 | 1920 | 100 | Plus |
3L | 28110227 | 3L | 11795061..11795387 | 1196..1522 | 1635 | 100 | Plus |
3L | 28110227 | 3L | 11794797..11795003 | 991..1197 | 1035 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:54:25 has no hits.
BO11794.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:49:23 Download gff for
BO11794.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10907-RA | 1..1509 | 17..1526 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:04:22 Download gff for
BO11794.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10907-RA | 44..1554 | 17..1527 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:41 Download gff for
BO11794.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10907-RA | 74..1579 | 17..1524 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:49:23 Download gff for
BO11794.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10907-RA | 44..1554 | 17..1527 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:29:50 Download gff for
BO11794.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10907-RA | 74..1579 | 17..1524 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:29:50 Download gff for
BO11794.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11793587..11794176 | 17..606 | 100 | -> | Plus |
3L | 11794354..11794737 | 607..990 | 100 | -> | Plus |
3L | 11794797..11795003 | 991..1197 | 100 | -> | Plus |
3L | 11795063..11795387 | 1198..1524 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:41 Download gff for
BO11794.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11787897..11788103 | 991..1197 | 100 | -> | Plus |
arm_3L | 11786687..11787276 | 17..606 | 100 | -> | Plus |
arm_3L | 11787454..11787837 | 607..990 | 100 | -> | Plus |
arm_3L | 11788163..11788487 | 1198..1524 | 99 | | Plus |
BO11794.pep Sequence
Translation from 16 to 1540
> BO11794.pep
MSNIYIQEPPTSGKVLLKTTVGDIDIELWARECPKACRNFVQLCLEGYYK
NTEFHRLVKGFIVQGGDPNGDGTGGESIYGQPFKDEFHSRLRYTRRGLVG
MANSGKDDNGSQFFFTFAPTPELQNKNTLFGKITGDTIYNMLKLEDGIVD
HQERPMHAHRIVSTEVLSNPFDDIVPRILSQPSTKSKKTKKERQGVKNFG
LLSFGEEAEGDEEETNVYVKQNAGKAKSLHDVTDDPKLSKEPIRVPKVEK
ADIEEHLSDDCPEDSVKDKPSTASSDLIKMKLSKRSKSGADKKVQPVEEK
SDSEDDEDVLLTREEEQSRKVSEEKSKIREEIASLKKQYQMDKQSKDKLV
NGQEKAAKSNEIKGSSENHYINDFIESKEKYTAKVKLQPKGQSREAFTLS
LLSKFRTKLDNLKQKSSSDDGESEPKDIDDRVVEQEIIGDDWLSHTLNFN
STTPVLAKDANKKGDDWYDAYDPRNPLNKRKRGETGSSKSSSGKSKSSKR
DFASFLDH
BO11794.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:48:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10907-PA | 502 | CG10907-PA | 1..502 | 1..502 | 2604 | 100 | Plus |
CG7747-PA | 517 | CG7747-PA | 280..506 | 13..250 | 416 | 37.9 | Plus |
Cypl-PA | 176 | CG13892-PA | 23..173 | 15..166 | 379 | 46.4 | Plus |
CG11777-PA | 161 | CG11777-PA | 3..121 | 15..133 | 333 | 52.9 | Plus |
CG3511-PB | 637 | CG3511-PB | 484..602 | 15..133 | 327 | 52.9 | Plus |