Clone Sequence Records
BO11804.3prime Sequence
813 bp (782 high quality bases) assembled on 2006-04-19
> BO11804.3prime
ATGGTCTAGAAAGCTTGCGAATCGCATGCGGTGGGGGTATTGGGAGGAGT
GCAGGGCAAACATGTTCTGCAAGTACTTGGCGAAGAACTTGCCCTCGGGA
TGGGCCTTGATGACCTTCAGCAGGGCGGCGTCCACCTCCTTCTGGTCCTT
CTTGCGCTGCTCGTTGGGCACGAAGCGCTCCTTCTTGGCCGCGAAGATGT
CGGCCTCGCCGGTCTTCTTGTCCTTCTTAGCCTTCAGACGGCGGAAGTAG
GCGTCGTTCAGGTGCTCGGGCACCTTGAAGGCACCGAGATCCACCTTCGA
GGAGGTGCCGATCACGTAGCGCTGGGACACGCGACGCAGCGGGCACGAGT
TGAGGGCGAAGGGTCCGGTGACCAGCAGGAGTCCGGAGGCCAAGACCTTC
AACAGGACGACGCGCTTGCCCTGGTGGCGTCCGGCCAGCAGGATGAGCAC
GGTTCCGGGGGTCAGGTTGCGGCGCGTGTTGCGTTTGTGCTCGCTGAAGT
TTGCCTTGGAGGGGCGCTTCTTCACGAACGTCTTGGTCGGGTAGGAGGCC
TTGCTCTTCTTCAGGAAGACCGTGCGCTCACCGCCGTTCTTGGGTCCTCC
GATCTTCTTCACCTTCTTGATGGGCACCTTGGCCTTCTCCACGACGGGGC
TCTTCTTGTCCTTCAGGCGGTACAGAGCACGACGCTTGTACATCTGGGCC
TTGGAGTAACGCAGGATACCGCCCTTCAGGTAGGAGTTGACGGGGTGCTT
CTTGCCCTTTTTGGCCGACTTGGCCACCTTTTTAGCTTTCTCGATGGGTG
CCATGTCCACTGA
BO11804.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:30:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11522-PB | 789 | RpL6-RB | 1..786 | 804..19 | 3930 | 100 | Minus |
CG11522-PA | 732 | RpL6-RA | 187..729 | 561..19 | 2715 | 100 | Minus |
CG11522-PA | 732 | RpL6-RA | 1..192 | 804..613 | 960 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 18:44:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL6-RB | 967 | CG11522-RB | 47..832 | 804..19 | 3930 | 100 | Minus |
RpL6-RA | 910 | CG11522-RA | 233..775 | 561..19 | 2715 | 100 | Minus |
RpL6-RA | 910 | CG11522-RA | 47..238 | 804..613 | 960 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 18:44:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31594927..31595604 | 19..696 | 3390 | 100 | Plus |
3R | 32079331 | 3R | 31596048..31596158 | 694..804 | 555 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 18:44:36 has no hits.
BO11804.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:17:13 Download gff for
BO11804.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL6-PB | 1..789 | 15..804 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:45:09 Download gff for
BO11804.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11522-PB | 1..789 | 15..804 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:41:52 Download gff for
BO11804.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL6-RB | 47..837 | 13..804 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:47:32 Download gff for
BO11804.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL6-RB | 47..837 | 13..804 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:47:32 Download gff for
BO11804.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31594922..31595601 | 13..693 | 99 | <- | Plus |
3R | 31596048..31596158 | 694..804 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:41:52 Download gff for
BO11804.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27420644..27421323 | 13..693 | 99 | <- | Plus |
arm_3R | 27421770..27421880 | 694..804 | 100 | | Plus |
BO11804.5prime Sequence
799 bp (782 high quality bases) assembled on 2006-04-19
> BO11804.5prime
GAAGTTATCAGTCGACATGGCACCCATCGAGAAAGCTAAAAAGGTGGCCA
AGTCGGCCAAAAAGGGCAAGAAGCACCCCGTCAACTCCTACCTGAAGGGC
GGTATCCTGCGTTACTCCAAGGCCCAGATGTACAAGCGTCGTGCTCTGTA
CCGCCTGAAGGACAAGAAGAGCCCCGTCGTGGAGAAGGCCAAGGTGCCCA
TCAAGAAGGTGAAGAAGATCGGAGGACCCAAGAACGGCGGTGAGCGCACG
GTCTTCCTGAAGAAGAGCAAGGCCTCCTACCCGACCAAGACGTTCGTGAA
GAAGCGCCCCTCCAAGGCAAACTTCAGCGAGCACAAACGCAACACGCGCC
GCAACCTGACCCCCGGAACCGTGCTCATCCTGCTGGCCGGACGCCACCAG
GGCAAGCGCGTCGTCCTGTTGAAGGTCTTGGCCTCCGGACTCCTGCTGGT
CACCGGACCCTTCGCCCTCAACTCGTGCCCGCTGCGTCGCGTGTCCCAGC
GCTACGTGATCGGCACCTCCTCGAAGGTGGATCTCGGTGCCTTCAAGGTG
CCCGAGCACCTGAACGACGCCTACTTCCGCCGTCTGAAGGCTAAGAAGGA
CAAGAAGACCGGCGAGGCCGACATCTTCGCGGCCAAGAAGGAGCGCTTCG
TGCCCAACGAGCAGCGCAAGAAGGACCAGAAGGAGGTGGACGCCGCCCTG
CTGAAGGTCATCAAGGCCCATCCCGAGGGCAAGTTCTTCGCCAAGTACTT
GCAGAACATGTTTGCCCTGCACTCCTCCAATACCCCACCGCATGCGATT
BO11804.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:30:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11522-PB | 789 | RpL6-RB | 1..762 | 17..778 | 3810 | 100 | Plus |
CG11522-PA | 732 | RpL6-RA | 187..705 | 260..778 | 2595 | 100 | Plus |
CG11522-PA | 732 | RpL6-RA | 1..192 | 17..208 | 960 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:05:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL6-RB | 967 | CG11522-RB | 47..831 | 17..799 | 3875 | 99.7 | Plus |
RpL6-RA | 910 | CG11522-RA | 233..774 | 260..799 | 2660 | 99.6 | Plus |
RpL6-RA | 910 | CG11522-RA | 47..238 | 17..208 | 960 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:05:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31594928..31595604 | 799..125 | 3285 | 99.7 | Minus |
3R | 32079331 | 3R | 31596048..31596158 | 127..17 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 20:05:48 has no hits.
BO11804.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:17:14 Download gff for
BO11804.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL6-PB | 1..785 | 17..799 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:45:11 Download gff for
BO11804.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11522-PB | 1..785 | 17..799 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 11:55:09 Download gff for
BO11804.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL6-RB | 42..831 | 8..799 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:41:42 Download gff for
BO11804.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL6-RB | 42..831 | 8..799 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:41:42 Download gff for
BO11804.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31594928..31595601 | 128..799 | 99 | <- | Minus |
3R | 31596048..31596163 | 8..127 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 11:55:09 Download gff for
BO11804.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27421770..27421885 | 8..127 | 96 | | Minus |
arm_3R | 27420650..27421323 | 128..799 | 99 | <- | Minus |
BO11804.complete Sequence
820 bp assembled on 2006-10-11
GenBank Submission: FJ632202
> BO11804.complete
GAAGTTATCAGTCGACATGGCACCCATCGAGAAAGCTAAAAAGGTGGCCA
AGTCGGCCAAAAAGGGCAAGAAGCACCCCGTCAACTCCTACCTGAAGGGC
GGTATCCTGCGTTACTCCAAGGCCCAGATGTACAAGCGTCGTGCTCTGTA
CCGCCTGAAGGACAAGAAGAGCCCCGTCGTGGAGAAGGCCAAGGTGCCCA
TCAAGAAGGTGAAGAAGATCGGAGGACCCAAGAACGGCGGTGAGCGCACG
GTCTTCCTGAAGAAGAGCAAGGCCTCCTACCCGACCAAGACGTTCGTGAA
GAAGCGCCCCTCCAAGGCAAACTTCAGCGAGCACAAACGCAACACGCGCC
GCAACCTGACCCCCGGAACCGTGCTCATCCTGCTGGCCGGACGCCACCAG
GGCAAGCGCGTCGTCCTGTTGAAGGTCTTGGCCTCCGGACTCCTGCTGGT
CACCGGACCCTTCGCCCTCAACTCGTGCCCGCTGCGTCGCGTGTCCCAGC
GCTACGTGATCGGCACCTCCTCGAAGGTGGATCTCGGTGCCTTCAAGGTG
CCCGAGCACCTGAACGACGCCTACTTCCGCCGTCTGAAGGCTAAGAAGGA
CAAGAAGACCGGCGAGGCCGACATCTTCGCGGCCAAGAAGGAGCGCTTCG
TGCCCAACGAGCAGCGCAAGAAGGACCAGAAGGAGGTGGACGCCGCCCTG
CTGAAGGTCATCAAGGCCCATCCCGAGGGCAAGTTCTTCGCCAAGTACTT
GCAGAACATGTTTGCCCTGCACTCCTCCCAATACCCCCACCGCATGCGAT
TCGCAAGCTTTCTAGACCAT
BO11804.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:05:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL6-RB | 789 | CG11522-PB | 1..786 | 17..802 | 3930 | 100 | Plus |
RpL6-RA | 732 | CG11522-PA | 187..729 | 260..802 | 2715 | 100 | Plus |
RpL6-RA | 732 | CG11522-PA | 1..192 | 17..208 | 960 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:05:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL6-RB | 967 | CG11522-RB | 47..832 | 17..802 | 3930 | 100 | Plus |
RpL6-RA | 910 | CG11522-RA | 233..775 | 260..802 | 2715 | 100 | Plus |
RpL6-RA | 910 | CG11522-RA | 47..238 | 17..208 | 960 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:05:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31594927..31595604 | 802..125 | 3390 | 100 | Minus |
3R | 32079331 | 3R | 31596048..31596158 | 127..17 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:05:38 has no hits.
BO11804.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:49:24 Download gff for
BO11804.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL6-RB | 1..789 | 17..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:04:23 Download gff for
BO11804.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL6-RB | 83..878 | 8..808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:06:43 Download gff for
BO11804.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL6-RB | 47..832 | 17..804 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:49:24 Download gff for
BO11804.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL6-RB | 83..878 | 8..808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:14:38 Download gff for
BO11804.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL6-RB | 47..832 | 17..804 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:14:38 Download gff for
BO11804.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31594925..31595601 | 128..804 | 99 | <- | Minus |
3R | 31596048..31596158 | 17..127 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:06:43 Download gff for
BO11804.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27420647..27421323 | 128..804 | 99 | <- | Minus |
arm_3R | 27421770..27421880 | 17..127 | 100 | | Minus |
BO11804.pep Sequence
Translation from 16 to 820
> BO11804.pep
MAPIEKAKKVAKSAKKGKKHPVNSYLKGGILRYSKAQMYKRRALYRLKDK
KSPVVEKAKVPIKKVKKIGGPKNGGERTVFLKKSKASYPTKTFVKKRPSK
ANFSEHKRNTRRNLTPGTVLILLAGRHQGKRVVLLKVLASGLLLVTGPFA
LNSCPLRRVSQRYVIGTSSKVDLGAFKVPEHLNDAYFRRLKAKKDKKTGE
ADIFAAKKERFVPNEQRKKDQKEVDAALLKVIKAHPEGKFFAKYLQNMFA
LHSSQYPHRMRFASFLDH
BO11804.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:48:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL6-PB | 262 | CG11522-PB | 1..262 | 1..262 | 1335 | 100 | Plus |
RpL6-PA | 243 | CG11522-PA | 1..243 | 1..262 | 1206 | 92.7 | Plus |