Clone BO11804 Report

Search the DGRC for BO11804

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:118
Well:4
Vector:pDNR-Dual
Associated Gene/TranscriptRpL6-RB
Protein status:BO11804.pep: validated full length
Sequenced Size:820

Clone Sequence Records

BO11804.3prime Sequence

813 bp (782 high quality bases) assembled on 2006-04-19

> BO11804.3prime
ATGGTCTAGAAAGCTTGCGAATCGCATGCGGTGGGGGTATTGGGAGGAGT
GCAGGGCAAACATGTTCTGCAAGTACTTGGCGAAGAACTTGCCCTCGGGA
TGGGCCTTGATGACCTTCAGCAGGGCGGCGTCCACCTCCTTCTGGTCCTT
CTTGCGCTGCTCGTTGGGCACGAAGCGCTCCTTCTTGGCCGCGAAGATGT
CGGCCTCGCCGGTCTTCTTGTCCTTCTTAGCCTTCAGACGGCGGAAGTAG
GCGTCGTTCAGGTGCTCGGGCACCTTGAAGGCACCGAGATCCACCTTCGA
GGAGGTGCCGATCACGTAGCGCTGGGACACGCGACGCAGCGGGCACGAGT
TGAGGGCGAAGGGTCCGGTGACCAGCAGGAGTCCGGAGGCCAAGACCTTC
AACAGGACGACGCGCTTGCCCTGGTGGCGTCCGGCCAGCAGGATGAGCAC
GGTTCCGGGGGTCAGGTTGCGGCGCGTGTTGCGTTTGTGCTCGCTGAAGT
TTGCCTTGGAGGGGCGCTTCTTCACGAACGTCTTGGTCGGGTAGGAGGCC
TTGCTCTTCTTCAGGAAGACCGTGCGCTCACCGCCGTTCTTGGGTCCTCC
GATCTTCTTCACCTTCTTGATGGGCACCTTGGCCTTCTCCACGACGGGGC
TCTTCTTGTCCTTCAGGCGGTACAGAGCACGACGCTTGTACATCTGGGCC
TTGGAGTAACGCAGGATACCGCCCTTCAGGTAGGAGTTGACGGGGTGCTT
CTTGCCCTTTTTGGCCGACTTGGCCACCTTTTTAGCTTTCTCGATGGGTG
CCATGTCCACTGA

BO11804.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:30:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG11522-PB 789 RpL6-RB 1..786 804..19 3930 100 Minus
CG11522-PA 732 RpL6-RA 187..729 561..19 2715 100 Minus
CG11522-PA 732 RpL6-RA 1..192 804..613 960 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 18:44:40
Subject Length Description Subject Range Query Range Score Percent Strand
RpL6-RB 967 CG11522-RB 47..832 804..19 3930 100 Minus
RpL6-RA 910 CG11522-RA 233..775 561..19 2715 100 Minus
RpL6-RA 910 CG11522-RA 47..238 804..613 960 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 18:44:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31594927..31595604 19..696 3390 100 Plus
3R 32079331 3R 31596048..31596158 694..804 555 100 Plus
Blast to na_te.dros performed on 2015-02-06 18:44:36 has no hits.

BO11804.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:17:13 Download gff for BO11804.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL6-PB 1..789 15..804 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:45:09 Download gff for BO11804.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11522-PB 1..789 15..804 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:41:52 Download gff for BO11804.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL6-RB 47..837 13..804 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:47:32 Download gff for BO11804.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL6-RB 47..837 13..804 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:47:32 Download gff for BO11804.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 31594922..31595601 13..693 99 <- Plus
3R 31596048..31596158 694..804 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:41:52 Download gff for BO11804.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27420644..27421323 13..693 99 <- Plus
arm_3R 27421770..27421880 694..804 100   Plus

BO11804.5prime Sequence

799 bp (782 high quality bases) assembled on 2006-04-19

> BO11804.5prime
GAAGTTATCAGTCGACATGGCACCCATCGAGAAAGCTAAAAAGGTGGCCA
AGTCGGCCAAAAAGGGCAAGAAGCACCCCGTCAACTCCTACCTGAAGGGC
GGTATCCTGCGTTACTCCAAGGCCCAGATGTACAAGCGTCGTGCTCTGTA
CCGCCTGAAGGACAAGAAGAGCCCCGTCGTGGAGAAGGCCAAGGTGCCCA
TCAAGAAGGTGAAGAAGATCGGAGGACCCAAGAACGGCGGTGAGCGCACG
GTCTTCCTGAAGAAGAGCAAGGCCTCCTACCCGACCAAGACGTTCGTGAA
GAAGCGCCCCTCCAAGGCAAACTTCAGCGAGCACAAACGCAACACGCGCC
GCAACCTGACCCCCGGAACCGTGCTCATCCTGCTGGCCGGACGCCACCAG
GGCAAGCGCGTCGTCCTGTTGAAGGTCTTGGCCTCCGGACTCCTGCTGGT
CACCGGACCCTTCGCCCTCAACTCGTGCCCGCTGCGTCGCGTGTCCCAGC
GCTACGTGATCGGCACCTCCTCGAAGGTGGATCTCGGTGCCTTCAAGGTG
CCCGAGCACCTGAACGACGCCTACTTCCGCCGTCTGAAGGCTAAGAAGGA
CAAGAAGACCGGCGAGGCCGACATCTTCGCGGCCAAGAAGGAGCGCTTCG
TGCCCAACGAGCAGCGCAAGAAGGACCAGAAGGAGGTGGACGCCGCCCTG
CTGAAGGTCATCAAGGCCCATCCCGAGGGCAAGTTCTTCGCCAAGTACTT
GCAGAACATGTTTGCCCTGCACTCCTCCAATACCCCACCGCATGCGATT

BO11804.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:30:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG11522-PB 789 RpL6-RB 1..762 17..778 3810 100 Plus
CG11522-PA 732 RpL6-RA 187..705 260..778 2595 100 Plus
CG11522-PA 732 RpL6-RA 1..192 17..208 960 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:05:49
Subject Length Description Subject Range Query Range Score Percent Strand
RpL6-RB 967 CG11522-RB 47..831 17..799 3875 99.7 Plus
RpL6-RA 910 CG11522-RA 233..774 260..799 2660 99.6 Plus
RpL6-RA 910 CG11522-RA 47..238 17..208 960 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:05:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31594928..31595604 799..125 3285 99.7 Minus
3R 32079331 3R 31596048..31596158 127..17 555 100 Minus
Blast to na_te.dros performed on 2015-02-12 20:05:48 has no hits.

BO11804.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:17:14 Download gff for BO11804.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL6-PB 1..785 17..799 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:45:11 Download gff for BO11804.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11522-PB 1..785 17..799 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 11:55:09 Download gff for BO11804.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL6-RB 42..831 8..799 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:41:42 Download gff for BO11804.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL6-RB 42..831 8..799 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:41:42 Download gff for BO11804.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 31594928..31595601 128..799 99 <- Minus
3R 31596048..31596163 8..127 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 11:55:09 Download gff for BO11804.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27421770..27421885 8..127 96   Minus
arm_3R 27420650..27421323 128..799 99 <- Minus

BO11804.complete Sequence

820 bp assembled on 2006-10-11

GenBank Submission: FJ632202

> BO11804.complete
GAAGTTATCAGTCGACATGGCACCCATCGAGAAAGCTAAAAAGGTGGCCA
AGTCGGCCAAAAAGGGCAAGAAGCACCCCGTCAACTCCTACCTGAAGGGC
GGTATCCTGCGTTACTCCAAGGCCCAGATGTACAAGCGTCGTGCTCTGTA
CCGCCTGAAGGACAAGAAGAGCCCCGTCGTGGAGAAGGCCAAGGTGCCCA
TCAAGAAGGTGAAGAAGATCGGAGGACCCAAGAACGGCGGTGAGCGCACG
GTCTTCCTGAAGAAGAGCAAGGCCTCCTACCCGACCAAGACGTTCGTGAA
GAAGCGCCCCTCCAAGGCAAACTTCAGCGAGCACAAACGCAACACGCGCC
GCAACCTGACCCCCGGAACCGTGCTCATCCTGCTGGCCGGACGCCACCAG
GGCAAGCGCGTCGTCCTGTTGAAGGTCTTGGCCTCCGGACTCCTGCTGGT
CACCGGACCCTTCGCCCTCAACTCGTGCCCGCTGCGTCGCGTGTCCCAGC
GCTACGTGATCGGCACCTCCTCGAAGGTGGATCTCGGTGCCTTCAAGGTG
CCCGAGCACCTGAACGACGCCTACTTCCGCCGTCTGAAGGCTAAGAAGGA
CAAGAAGACCGGCGAGGCCGACATCTTCGCGGCCAAGAAGGAGCGCTTCG
TGCCCAACGAGCAGCGCAAGAAGGACCAGAAGGAGGTGGACGCCGCCCTG
CTGAAGGTCATCAAGGCCCATCCCGAGGGCAAGTTCTTCGCCAAGTACTT
GCAGAACATGTTTGCCCTGCACTCCTCCCAATACCCCCACCGCATGCGAT
TCGCAAGCTTTCTAGACCAT

BO11804.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:05:40
Subject Length Description Subject Range Query Range Score Percent Strand
RpL6-RB 789 CG11522-PB 1..786 17..802 3930 100 Plus
RpL6-RA 732 CG11522-PA 187..729 260..802 2715 100 Plus
RpL6-RA 732 CG11522-PA 1..192 17..208 960 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:05:41
Subject Length Description Subject Range Query Range Score Percent Strand
RpL6-RB 967 CG11522-RB 47..832 17..802 3930 100 Plus
RpL6-RA 910 CG11522-RA 233..775 260..802 2715 100 Plus
RpL6-RA 910 CG11522-RA 47..238 17..208 960 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:05:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31594927..31595604 802..125 3390 100 Minus
3R 32079331 3R 31596048..31596158 127..17 555 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:05:38 has no hits.

BO11804.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:49:24 Download gff for BO11804.complete
Subject Subject Range Query Range Percent Splice Strand
RpL6-RB 1..789 17..806 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:04:23 Download gff for BO11804.complete
Subject Subject Range Query Range Percent Splice Strand
RpL6-RB 83..878 8..808 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:06:43 Download gff for BO11804.complete
Subject Subject Range Query Range Percent Splice Strand
RpL6-RB 47..832 17..804 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:49:24 Download gff for BO11804.complete
Subject Subject Range Query Range Percent Splice Strand
RpL6-RB 83..878 8..808 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:14:38 Download gff for BO11804.complete
Subject Subject Range Query Range Percent Splice Strand
RpL6-RB 47..832 17..804 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:14:38 Download gff for BO11804.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31594925..31595601 128..804 99 <- Minus
3R 31596048..31596158 17..127 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:06:43 Download gff for BO11804.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27420647..27421323 128..804 99 <- Minus
arm_3R 27421770..27421880 17..127 100   Minus

BO11804.pep Sequence

Translation from 16 to 820

> BO11804.pep
MAPIEKAKKVAKSAKKGKKHPVNSYLKGGILRYSKAQMYKRRALYRLKDK
KSPVVEKAKVPIKKVKKIGGPKNGGERTVFLKKSKASYPTKTFVKKRPSK
ANFSEHKRNTRRNLTPGTVLILLAGRHQGKRVVLLKVLASGLLLVTGPFA
LNSCPLRRVSQRYVIGTSSKVDLGAFKVPEHLNDAYFRRLKAKKDKKTGE
ADIFAAKKERFVPNEQRKKDQKEVDAALLKVIKAHPEGKFFAKYLQNMFA
LHSSQYPHRMRFASFLDH

BO11804.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:48:47
Subject Length Description Subject Range Query Range Score Percent Strand
RpL6-PB 262 CG11522-PB 1..262 1..262 1335 100 Plus
RpL6-PA 243 CG11522-PA 1..243 1..262 1206 92.7 Plus