Clone Sequence Records
BO11805.3prime Sequence
893 bp (830 high quality bases) assembled on 2006-04-19
> BO11805.3prime
ATGGTCTAGAAAGCTTGCACTCGTCGCCGTCGGCGACTGGATCTCGCCGC
CCAGGGCGGAGAGCTCCTTGAGGAACTGCCTCGCGTTGGTCAGCGTGGAA
GCGCCATAAATGATGCGCCGTTGCACATTGGACGTTTGCTTCTGTTTGAT
GAAGTCCACCAGGTTCTGGTACTCGATGTAGTTGCCTCCGCCGACCATGA
ACACCACGGCGTCCTGGAATGGAGCACGATTTTTGGGCAGGACCTCGCCA
CCTTTGAGCAGCTTTGGATCCAGATAAAGGTAGTCATCCGTCTCCGCATT
GCTGCGGCACTCCATCACCTGCTCGGTGATCTTGGTCACCGGAAGATTAT
GTCGCTTGACCACCAGATTCTTGACGCCCTCCATCACGAAGGAGCTGCCC
TGTGAGACGAGTTTAGTGAACATGGACACAGTCTTGGTGCCGCCACCCTC
GTACTGTGTGGCTTGGCTAATGCTCGGCGAGCGGTTCATGATTCCCTTCC
ATCGTTGCACGTACGCAAGGGCAGTTAGGTCACAACCGGCAGCCTGCAGC
GCCTCCTTGAGCCGCTCCTGCTCCGATTCGGGTAACTGCTGGGCGCAGAT
AAAGTAGATGATATACAGGCGCAGCTTGTCCTCCGCCTGACCAAACTCTC
CATCTCGCAGTAGGTCCAGCAGCGGTCTGTCCAGTGTCTGCTTCGACATG
ACCTTCTCCTCGATCTCAAAAAACGAATCCAGTCGTCGAGCCTTAATGAA
GTTCAGGATTGCAGTGGCGATCTTGGTGTGCATGTCGATCAGTCGCTTCT
TCTCCATCAGTTGGGGGCAGCGAATTGACGGCATTGGTGAGCCTGGCCGT
TGTGTCATTTGACCAAGAGAATGCAATGTCCGACTCGCCCTCG
BO11805.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:30:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3539-PC | 1920 | Slh-RC | 1120..1917 | 816..19 | 3990 | 100 | Minus |
| CG3539-PD | 1974 | Slh-RD | 1120..1587 | 816..349 | 2340 | 100 | Minus |
| CG3539-PD | 1974 | Slh-RD | 1642..1971 | 348..19 | 1650 | 100 | Minus |
| CG3539-PC | 1920 | Slh-RC | 1078..1123 | 859..814 | 230 | 100 | Minus |
| CG3539-PD | 1974 | Slh-RD | 1078..1123 | 859..814 | 230 | 100 | Minus |
| CG3539-PC | 1920 | Slh-RC | 1044..1072 | 893..865 | 145 | 100 | Minus |
| CG3539-PD | 1974 | Slh-RD | 1044..1072 | 893..865 | 145 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:33:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Slh-RG | 4220 | CG3539-RG | 1195..2068 | 893..19 | 4305 | 99.7 | Minus |
| Slh-RC | 2197 | CG3539-RC | 1195..2068 | 893..19 | 4305 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:33:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2490733..2491276 | 349..893 | 2615 | 99.1 | Plus |
| 2L | 23513712 | 2L | 2490349..2490678 | 19..348 | 1650 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:33:23 has no hits.
BO11805.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:17:15 Download gff for
BO11805.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3539-PB | 1044..1920 | 18..893 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:45:12 Download gff for
BO11805.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3539-PC | 1044..1920 | 18..893 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:56:55 Download gff for
BO11805.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Slh-RC | 1195..2068 | 19..893 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:03:00 Download gff for
BO11805.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Slh-RC | 1195..2068 | 19..893 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:03:00 Download gff for
BO11805.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2490351..2490678 | 21..348 | 100 | <- | Plus |
| 2L | 2490733..2491276 | 349..893 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:56:55 Download gff for
BO11805.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2490351..2490678 | 21..348 | 100 | <- | Plus |
| arm_2L | 2490733..2491276 | 349..893 | 99 | | Plus |
BO11805.5prime Sequence
870 bp (778 high quality bases) assembled on 2006-04-19
> BO11805.5prime
GAAGTTATCAGCCGACATGCTGACCCTGCGGGAGCGCCAAATCAATGCCA
TTAAGCAGATGCTTAATTTGAACTCGCAGCAGCCGAAAGCCCTAGCTGCC
GAGCCCGTGTGGAAGATCCTTATCTACGATCGCGTTGGCCAGGACATCAT
ATCGCCCATTATTTCCATCAAGGAGCTGCGCGAGTTGGGCGTGACGCTGC
ATGTGCAACTGCACTCGGATCGCGACTCCATTCCGGATGTGCCGGCTATA
TACTTCTGCCTGCCCACCGACGAGAATTTGGACAGGATTCAGCAGGACTT
CTCGAGCGGACTGTACGACGTGTACCACCTGAACTTCCTAGCTCCCATAA
CGCGCAGCAAAATCGAGAATCTGGCCGCCGCAGCCCTGCATGCCGGCTGC
GTGGCCAACATCCATCGCGTTTACGACCAGTATGTGAACTTCATCAGTCT
AGAGGATGACTTCTTCATCCTAAAGCACCAGCAGAGCGATCAGCTTTCAT
ACTACGCCATCAACCGGGCCAACACCCGCGATGAAGAGATGGAGGCCCTG
ATGGACTCCATTGTAGACTCGCTCTTCGCCCTGTTTGTGACCCTGGGCAA
TGTGCCCATCATCCGCTGTCCGCGGAACAGTGCCGCTGAAATGGTGGCAC
GCAAGCTGGAGAAGAAGCTGCGCGAGAACCTTTGGGATGCGCGTGCCAAT
TTGTTCCACATGGATGCCACGCAAGCCGGCGGCGGAGTGTTCAGCTTTCA
GAGACCTGTGCTCCTGCTGCTGGACAGGAACATGGATTTAGCCACGCCGC
TCCATCACACCTGGTCGTATCAGGCGCTTGTGCACGATGTACTGGACTTG
AGACTGAATCTTGTCTACGT
BO11805.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:30:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3539-PC | 1920 | Slh-RC | 1..854 | 17..870 | 4220 | 99.7 | Plus |
| CG3539-PD | 1974 | Slh-RD | 1..854 | 17..870 | 4220 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:22:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Slh-RG | 4220 | CG3539-RG | 152..1005 | 17..870 | 4240 | 99.8 | Plus |
| Slh-RC | 2197 | CG3539-RC | 152..1005 | 17..870 | 4240 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:22:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2491536..2492201 | 870..205 | 3300 | 99.7 | Minus |
| 2L | 23513712 | 2L | 2492258..2492418 | 205..45 | 805 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:22:46 has no hits.
BO11805.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:17:16 Download gff for
BO11805.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Slh-PD | 1..854 | 17..870 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:45:13 Download gff for
BO11805.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3539-PD | 1..854 | 17..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:23:13 Download gff for
BO11805.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Slh-RC | 152..1005 | 17..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:18:43 Download gff for
BO11805.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Slh-RC | 152..1005 | 17..870 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:18:43 Download gff for
BO11805.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2491536..2492201 | 205..870 | 99 | <- | Minus |
| 2L | 2492259..2492418 | 45..204 | 100 | <- | Minus |
| 2L | 2492493..2492520 | 17..44 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:23:13 Download gff for
BO11805.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2491536..2492201 | 205..870 | 99 | <- | Minus |
| arm_2L | 2492259..2492418 | 45..204 | 100 | <- | Minus |
| arm_2L | 2492493..2492520 | 17..44 | 100 | | Minus |
BO11805.complete Sequence
1951 bp assembled on 2008-08-14
GenBank Submission: FJ632203
> BO11805.complete
GAAGTTATCAGCCGACATGCTGACCCTGCGGGAGCGCCAAATCAATGCCA
TTAAGCAGATGCTTAATTTGAACTCGCAGCAGCCGAAAGCCCTAGCTGCC
GAGCCCGTGTGGAAGATCCTTATCTACGATCGCGTTGGCCAGGACATCAT
ATCGCCCATTATTTCCATCAAGGAGCTGCGCGAGTTGGGCGTGACGCTGC
ATGTGCAACTGCACTCGGATCGCGACTCCATTCCGGATGTGCCGGCTATA
TACTTCTGCCTGCCCACCGACGAGAATTTGGACAGGATTCAGCAGGACTT
CTCGAGCGGACTGTACGACGTGTACCACCTGAACTTCCTAGCTCCCATAA
CGCGCAGCAAAATCGAGAATCTGGCCGCCGCAGCCCTGCATGCCGGCTGC
GTGGCCAACATCCATCGCGTTTACGACCAGTATGTGAACTTCATCAGTCT
AGAGGATGACTTCTTCATCCTAAAGCACCAGCAGAGCGATCAGCTTTCAT
ACTACGCCATCAACCGGGCCAACACCCGCGATGAAGAGATGGAGGCCCTG
ATGGACTCCATTGTAGACTCGCTCTTCGCCCTGTTTGTGACCCTGGGCAA
TGTGCCCATCATCCGCTGTCCGCGGAACAGTGCCGCTGAAATGGTGGCAC
GCAAGCTGGAGAAGAAGCTGCGCGAGAACCTTTGGGATGCGCGTGCCAAT
TTGTTCCACATGGATGCCACGCAAGCCGGCGGCGGAGTGTTCAGCTTTCA
GAGACCTGTGCTCCTGCTGCTGGACAGGAACATGGATTTAGCCACGCCGC
TCCATCACACCTGGTCGTATCAGGCGCTTGTGCACGATGTACTGGACTTG
GGACTGAATCTTGTCTACGTGGAGGACGAGACGGCTAGTGCGGGAGCCCG
CAAAAAACCCAAGGCCTGTGACTTGGACCGCAACGACCGCTTCTGGATGA
CGCACAAGGGCAGTCCATTTCCCACGGTGGCCGAAGCCATCCAGGAGGAG
CTGGAATCCTATCGGAACTCCGAGGAGGAGATCAAGCGCTTGAAGACATC
GATGGGTATCGAGGGCGAGTCGGACATTGCATTCTCTTTGGTCAATGACA
CAACGGCCAGGCTCACCAATGCCGTCAATTCGCTGCCCCAACTGATGGAG
AAGAAGCGACTGATCGACATGCACACCAAGATCGCCACTGCAATCCTGAA
CTTCATTAAGGCTCGACGACTGGATTCGTTTTTTGAGATCGAGGAGAAGG
TCATGTCGAAGCAGACACTGGACAGACCGCTGCTGGACCTACTGCGAGAT
GGAGAGTTTGGTCAGGCGGAGGACAAGCTGCGCCTGTATATCATCTACTT
TATCTGCGCCCAGCAGTTACCCGAATCGGAGCAGGAGCGGCTCAAGGAGG
CGCTGCAGGCTGCCGGTTGTGACCTAACTGCCCTTGCGTACGTGCAACGA
TGGAAGGGAATCATGAACCGCTCGCCGAGCATTAGCCAAGCCACACAGTA
CGAGGGTGGCGGCACCAAGACTGTGTCCATGTTCACTAAACTCGTCTCAC
AGGGCAGCTCCTTCGTGATGGAGGGCGTCAAGAATCTGGTGGTCAAGCGA
CATAATCTTCCGGTGACCAAGATCACCGAGCAGGTGATGGAGTGCCGCAG
CAATGCGGAGACGGATGACTACCTTTATCTGGATCCAAAGCTGCTCAAAG
GTGGCGAGGTCCTGCCCAAAAATCGTGCTCCATTCCAGGACGCCGTGGTG
TTCATGGTCGGCGGAGGCAACTACATCGAGTACCAGAACCTGGTGGACTT
CATCAAACAGAAGCAAACGTCCAATGTGCAACGGCGCATCATTTATGGCG
CTTCCACGCTGACCAACGCGAGGCAGTTCCTCAAGGAGCTCTCCGCCCTG
GGCGGCGAGATCCAGTCGCCGACGGCGACGAGTGCAAGCTTTCTAGACCA
T
BO11805.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:36:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Slh-RG | 1920 | CG3539-PG | 1..1917 | 17..1933 | 9570 | 99.9 | Plus |
| Slh-RC | 1920 | CG3539-PC | 1..1917 | 17..1933 | 9570 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:36:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Slh-RG | 4220 | CG3539-RG | 152..2068 | 17..1933 | 9570 | 99.9 | Plus |
| Slh-RC | 2197 | CG3539-RC | 152..2068 | 17..1933 | 9570 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:36:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2490733..2491443 | 1603..893 | 3555 | 100 | Minus |
| 2L | 23513712 | 2L | 2491512..2492201 | 894..205 | 3435 | 99.9 | Minus |
| 2L | 23513712 | 2L | 2490349..2490678 | 1933..1604 | 1650 | 100 | Minus |
| 2L | 23513712 | 2L | 2492258..2492418 | 205..45 | 805 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:36:23 has no hits.
BO11805.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:41:54 Download gff for
BO11805.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Slh-RC | 147..2063 | 17..1933 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:00:35 Download gff for
BO11805.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Slh-RC | 152..2068 | 17..1935 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:03:37 Download gff for
BO11805.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Slh-RC | 147..2063 | 17..1935 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:23:06 Download gff for
BO11805.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Slh-RC | 152..2068 | 17..1935 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:23:06 Download gff for
BO11805.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2490347..2490678 | 1604..1935 | 99 | <- | Minus |
| 2L | 2490733..2491439 | 897..1603 | 100 | <- | Minus |
| 2L | 2491509..2492201 | 205..896 | 99 | <- | Minus |
| 2L | 2492259..2492418 | 45..204 | 100 | <- | Minus |
| 2L | 2492493..2492520 | 17..44 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:00:35 Download gff for
BO11805.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2490347..2490678 | 1604..1935 | 99 | <- | Minus |
| arm_2L | 2490733..2491439 | 897..1603 | 100 | <- | Minus |
| arm_2L | 2491509..2492201 | 205..896 | 99 | <- | Minus |
| arm_2L | 2492259..2492418 | 45..204 | 100 | <- | Minus |
| arm_2L | 2492493..2492520 | 17..44 | 100 | | Minus |
BO11805.pep Sequence
Translation from 16 to 1951
> BO11805.pep
MLTLRERQINAIKQMLNLNSQQPKALAAEPVWKILIYDRVGQDIISPIIS
IKELRELGVTLHVQLHSDRDSIPDVPAIYFCLPTDENLDRIQQDFSSGLY
DVYHLNFLAPITRSKIENLAAAALHAGCVANIHRVYDQYVNFISLEDDFF
ILKHQQSDQLSYYAINRANTRDEEMEALMDSIVDSLFALFVTLGNVPIIR
CPRNSAAEMVARKLEKKLRENLWDARANLFHMDATQAGGGVFSFQRPVLL
LLDRNMDLATPLHHTWSYQALVHDVLDLGLNLVYVEDETASAGARKKPKA
CDLDRNDRFWMTHKGSPFPTVAEAIQEELESYRNSEEEIKRLKTSMGIEG
ESDIAFSLVNDTTARLTNAVNSLPQLMEKKRLIDMHTKIATAILNFIKAR
RLDSFFEIEEKVMSKQTLDRPLLDLLRDGEFGQAEDKLRLYIIYFICAQQ
LPESEQERLKEALQAAGCDLTALAYVQRWKGIMNRSPSISQATQYEGGGT
KTVSMFTKLVSQGSSFVMEGVKNLVVKRHNLPVTKITEQVMECRSNAETD
DYLYLDPKLLKGGEVLPKNRAPFQDAVVFMVGGGNYIEYQNLVDFIKQKQ
TSNVQRRIIYGASTLTNARQFLKELSALGGEIQSPTATSASFLDH
BO11805.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:56:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Slh-PG | 639 | CG3539-PG | 1..639 | 1..639 | 3259 | 100 | Plus |
| Slh-PC | 639 | CG3539-PC | 1..639 | 1..639 | 3259 | 100 | Plus |
| Vps45-PA | 574 | CG8228-PA | 20..558 | 30..633 | 280 | 22 | Plus |
| Rop-PB | 597 | CG15811-PB | 39..435 | 32..459 | 219 | 21.9 | Plus |
| Rop-PA | 597 | CG15811-PA | 39..435 | 32..459 | 219 | 21.9 | Plus |
