Clone BO11806 Report

Search the DGRC for BO11806

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:118
Well:6
Vector:pDNR-Dual
Associated Gene/TranscriptMkp3-RA
Protein status:BO11806.pep: validated full length
Sequenced Size:757

Clone Sequence Records

BO11806.5prime Sequence

755 bp (754 high quality bases) assembled on 2006-04-19

> BO11806.5prime
GAAGTTATCAGTCGACATGGGTCTTAGGTCCCTGCGCATTTCCACAACGC
AATCCGATTCCGCGTGCAGCAGTTCGGCGGAATCGTCGGATTGCGAGAGC
TCCAGCCACCATCACCACCACCACAGTCACCACAACTACAACGAGGCGCC
CGTGGAGATAATCCCTGGACTACTCTTCCTGGGAAATGCCACACACAGCT
GCGACTCGGAAGCGTTGAAAAAGTACAATATAAAGTATGTTTTGAATGTG
ACACCAGATTTGCCAAATAAGTTCAAGGAGTCGGGCGACATCAAGTATCT
GCAGATTCCGATCACGGATCACTACTCACAAGATTTGGCCATACATTTCC
CGGATGCCATACAGTTTATAGAGGAAGCGCGGTCCGCAAGCTCGGTGGTG
CTGGTCCACTGCCTGGCCGGAGTTTCGCGCTCGGTGACCGTGACGCTCGC
CTACTTGATGCACACGCGGGGCCTGAGTCTCAACGACGCCTTCGCGATGG
TGCGGGACCGGAAGCCGGATGTATCGCCCAACTTCCACTTCATGCAGCAG
CTGCTGTCCTTCGAGAGCCAACTGCGCCTGAGACCCGGCTCCAGGTTCTC
GTGCAGCTGCATTGCGCCGGACTGCAATTGCATGCAGACCACGGGCTTTA
TGGCCACCCATCTGGCGAATGCTACCGGGGTCTCGCCAGACTCCGGCATC
GAGTTCGATCGCTGGACCCCGTCGGACACGGGTCTTAAAGCAAGCTTTCT
AGACC

BO11806.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:30:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG14080-PB 1236 Mkp3-RB 511..1233 17..739 3615 100 Plus
CG14080-PA 726 Mkp3-RA 1..723 17..739 3615 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:22:21
Subject Length Description Subject Range Query Range Score Percent Strand
Mkp3-RD 4696 CG14080-RD 1214..1936 17..739 3615 100 Plus
Mkp3-RC 3119 CG14080-RC 1214..1936 17..739 3615 100 Plus
Mkp3-RA 2053 CG14080-RA 148..870 17..739 3615 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:22:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19068915..19069284 739..370 1850 100 Minus
3L 28110227 3L 19069682..19069891 235..26 1050 100 Minus
3L 28110227 3L 19069487..19069624 371..234 690 100 Minus
Blast to na_te.dros performed 2015-02-12 01:22:18
Subject Length Description Subject Range Query Range Score Percent Strand
I-element 5371 I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). 1236..1272 106..141 110 81.1 Plus

BO11806.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:17:18 Download gff for BO11806.5prime
Subject Subject Range Query Range Percent Splice Strand
Mkp3-PA 1..726 17..742 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:45:16 Download gff for BO11806.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14080-PA 1..726 17..742 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:20:17 Download gff for BO11806.5prime
Subject Subject Range Query Range Percent Splice Strand
Mkp3-RA 140..870 7..739 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:31:30 Download gff for BO11806.5prime
Subject Subject Range Query Range Percent Splice Strand
Mkp3-RA 140..870 7..739 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:31:30 Download gff for BO11806.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 19068915..19069282 372..739 100 <- Minus
3L 19069487..19069622 236..371 100 <- Minus
3L 19069682..19069891 26..235 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:20:17 Download gff for BO11806.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19062015..19062382 372..739 100 <- Minus
arm_3L 19062587..19062722 236..371 100 <- Minus
arm_3L 19062782..19062991 26..235 100   Minus

BO11806.3prime Sequence

755 bp (754 high quality bases) assembled on 2006-04-19

> BO11806.3prime
ATGGTCTAGAAAGCTTGCTTTAAGACCCGTGTCCGACGGGGTCCAGCGAT
CGAACTCGATGCCGGAGTCTGGCGAGACCCCGGTAGCATTCGCCAGATGG
GTGGCCATAAAGCCCGTGGTCTGCATGCAATTGCAGTCCGGCGCAATGCA
GCTGCACGAGAACCTGGAGCCGGGTCTCAGGCGCAGTTGGCTCTCGAAGG
ACAGCAGCTGCTGCATGAAGTGGAAGTTGGGCGATACATCCGGCTTCCGG
TCCCGCACCATCGCGAAGGCGTCGTTGAGACTCAGGCCCCGCGTGTGCAT
CAAGTAGGCGAGCGTCACGGTCACCGAGCGCGAAACTCCGGCCAGGCAGT
GGACCAGCACCACCGAGCTTGCGGACCGCGCTTCCTCTATAAACTGTATG
GCATCCGGGAAATGTATGGCCAAATCTTGTGAGTAGTGATCCGTGATCGG
AATCTGCAGATACTTGATGTCGCCCGACTCCTTGAACTTATTTGGCAAAT
CTGGTGTCACATTCAAAACATACTTTATATTGTACTTTTTCAACGCTTCC
GAGTCGCAGCTGTGTGTGGCATTTCCCAGGAAGAGTAGTCCAGGGATTAT
CTCCACGGGCGCCTCGTTGTAGTTGTGGTGACTGTGGTGGTGGTGATGGT
GGCTGGAGCTCTCGCAATCCGACGATTCCGCCGAACTGCTGCACGCGGAA
TCGGATTGCGTTGTGGAAATGCGCAGGGACCTAAGACCCATGTCGACTGA
TAACT

BO11806.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:30:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG14080-PB 1236 Mkp3-RB 511..1233 741..19 3615 100 Minus
CG14080-PA 726 Mkp3-RA 1..723 741..19 3615 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:33:49
Subject Length Description Subject Range Query Range Score Percent Strand
Mkp3-RD 4696 CG14080-RD 1214..1936 741..19 3615 100 Minus
Mkp3-RC 3119 CG14080-RC 1214..1936 741..19 3615 100 Minus
Mkp3-RA 2053 CG14080-RA 148..870 741..19 3615 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:33:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19068915..19069284 19..388 1850 100 Plus
3L 28110227 3L 19069682..19069891 523..732 1050 100 Plus
3L 28110227 3L 19069487..19069624 387..524 690 100 Plus
Blast to na_te.dros performed 2015-02-10 22:33:44
Subject Length Description Subject Range Query Range Score Percent Strand
I-element 5371 I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). 1236..1272 652..617 110 81.1 Minus

BO11806.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:17:17 Download gff for BO11806.3prime
Subject Subject Range Query Range Percent Splice Strand
Mkp3-PA 1..726 16..741 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:45:15 Download gff for BO11806.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14080-PA 1..726 16..741 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:56:57 Download gff for BO11806.3prime
Subject Subject Range Query Range Percent Splice Strand
Mkp3-RA 140..870 19..751 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:03:04 Download gff for BO11806.3prime
Subject Subject Range Query Range Percent Splice Strand
Mkp3-RA 140..870 19..751 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:03:04 Download gff for BO11806.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 19069682..19069891 523..732 100   Plus
3L 19068915..19069282 19..386 100 <- Plus
3L 19069487..19069622 387..522 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:56:57 Download gff for BO11806.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19062015..19062382 19..386 100 <- Plus
arm_3L 19062587..19062722 387..522 100 <- Plus
arm_3L 19062782..19062991 523..732 100   Plus

BO11806.complete Sequence

757 bp assembled on 2006-10-11

GenBank Submission: FJ638688

> BO11806.complete
GAAGTTATCAGTCGACATGGGTCTTAGGTCCCTGCGCATTTCCACAACGC
AATCCGATTCCGCGTGCAGCAGTTCGGCGGAATCGTCGGATTGCGAGAGC
TCCAGCCACCATCACCACCACCACAGTCACCACAACTACAACGAGGCGCC
CGTGGAGATAATCCCTGGACTACTCTTCCTGGGAAATGCCACACACAGCT
GCGACTCGGAAGCGTTGAAAAAGTACAATATAAAGTATGTTTTGAATGTG
ACACCAGATTTGCCAAATAAGTTCAAGGAGTCGGGCGACATCAAGTATCT
GCAGATTCCGATCACGGATCACTACTCACAAGATTTGGCCATACATTTCC
CGGATGCCATACAGTTTATAGAGGAAGCGCGGTCCGCAAGCTCGGTGGTG
CTGGTCCACTGCCTGGCCGGAGTTTCGCGCTCGGTGACCGTGACGCTCGC
CTACTTGATGCACACGCGGGGCCTGAGTCTCAACGACGCCTTCGCGATGG
TGCGGGACCGGAAGCCGGATGTATCGCCCAACTTCCACTTCATGCAGCAG
CTGCTGTCCTTCGAGAGCCAACTGCGCCTGAGACCCGGCTCCAGGTTCTC
GTGCAGCTGCATTGCGCCGGACTGCAATTGCATGCAGACCACGGGCTTTA
TGGCCACCCATCTGGCGAATGCTACCGGGGTCTCGCCAGACTCCGGCATC
GAGTTCGATCGCTGGACCCCGTCGGACACGGGTCTTAAAGCAAGCTTTCT
AGACCAT

BO11806.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:41:33
Subject Length Description Subject Range Query Range Score Percent Strand
Mkp3-RD 1236 CG14080-PD 511..1233 17..739 3615 100 Plus
Mkp3-RC 1494 CG14080-PC 511..1233 17..739 3615 100 Plus
Mkp3-RA 726 CG14080-PA 1..723 17..739 3615 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:41:34
Subject Length Description Subject Range Query Range Score Percent Strand
Mkp3-RD 4696 CG14080-RD 1214..1936 17..739 3615 100 Plus
Mkp3-RC 3119 CG14080-RC 1214..1936 17..739 3615 100 Plus
Mkp3-RA 2053 CG14080-RA 148..870 17..739 3615 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:41:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19068915..19069284 739..370 1850 100 Minus
3L 28110227 3L 19069682..19069891 235..26 1050 100 Minus
3L 28110227 3L 19069487..19069624 371..234 690 100 Minus
Blast to na_te.dros performed 2014-11-27 10:41:32
Subject Length Description Subject Range Query Range Score Percent Strand
I-element 5371 I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). 1236..1272 106..141 110 81.1 Plus

BO11806.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:49:25 Download gff for BO11806.complete
Subject Subject Range Query Range Percent Splice Strand
Mkp3-RA 1..726 17..742 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:04:25 Download gff for BO11806.complete
Subject Subject Range Query Range Percent Splice Strand
Mkp3-RA 140..870 7..739 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:34:06 Download gff for BO11806.complete
Subject Subject Range Query Range Percent Splice Strand
Mkp3-RA 148..870 17..741 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:49:26 Download gff for BO11806.complete
Subject Subject Range Query Range Percent Splice Strand
Mkp3-RA 140..870 7..739 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:28:21 Download gff for BO11806.complete
Subject Subject Range Query Range Percent Splice Strand
Mkp3-RA 148..870 17..741 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:28:21 Download gff for BO11806.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19068912..19069282 372..741 99 <- Minus
3L 19069487..19069622 236..371 100 <- Minus
3L 19069682..19069891 26..235 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:34:06 Download gff for BO11806.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19062012..19062382 372..741 99 <- Minus
arm_3L 19062587..19062722 236..371 100 <- Minus
arm_3L 19062782..19062991 26..235 100   Minus

BO11806.pep Sequence

Translation from 16 to 757

> BO11806.pep
MGLRSLRISTTQSDSACSSSAESSDCESSSHHHHHHSHHNYNEAPVEIIP
GLLFLGNATHSCDSEALKKYNIKYVLNVTPDLPNKFKESGDIKYLQIPIT
DHYSQDLAIHFPDAIQFIEEARSASSVVLVHCLAGVSRSVTVTLAYLMHT
RGLSLNDAFAMVRDRKPDVSPNFHFMQQLLSFESQLRLRPGSRFSCSCIA
PDCNCMQTTGFMATHLANATGVSPDSGIEFDRWTPSDTGLKASFLDH

BO11806.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:48:44
Subject Length Description Subject Range Query Range Score Percent Strand
Mkp3-PA 241 CG14080-PA 1..241 1..241 1276 100 Plus
Mkp3-PD 411 CG14080-PD 171..411 1..241 1276 100 Plus
Mkp3-PB 411 CG14080-PB 171..411 1..241 1276 100 Plus
Mkp3-PC 497 CG14080-PC 171..411 1..241 1276 100 Plus
puc-PA 476 CG7850-PA 100..271 9..187 267 38 Plus