Clone Sequence Records
BO11806.5prime Sequence
755 bp (754 high quality bases) assembled on 2006-04-19
> BO11806.5prime
GAAGTTATCAGTCGACATGGGTCTTAGGTCCCTGCGCATTTCCACAACGC
AATCCGATTCCGCGTGCAGCAGTTCGGCGGAATCGTCGGATTGCGAGAGC
TCCAGCCACCATCACCACCACCACAGTCACCACAACTACAACGAGGCGCC
CGTGGAGATAATCCCTGGACTACTCTTCCTGGGAAATGCCACACACAGCT
GCGACTCGGAAGCGTTGAAAAAGTACAATATAAAGTATGTTTTGAATGTG
ACACCAGATTTGCCAAATAAGTTCAAGGAGTCGGGCGACATCAAGTATCT
GCAGATTCCGATCACGGATCACTACTCACAAGATTTGGCCATACATTTCC
CGGATGCCATACAGTTTATAGAGGAAGCGCGGTCCGCAAGCTCGGTGGTG
CTGGTCCACTGCCTGGCCGGAGTTTCGCGCTCGGTGACCGTGACGCTCGC
CTACTTGATGCACACGCGGGGCCTGAGTCTCAACGACGCCTTCGCGATGG
TGCGGGACCGGAAGCCGGATGTATCGCCCAACTTCCACTTCATGCAGCAG
CTGCTGTCCTTCGAGAGCCAACTGCGCCTGAGACCCGGCTCCAGGTTCTC
GTGCAGCTGCATTGCGCCGGACTGCAATTGCATGCAGACCACGGGCTTTA
TGGCCACCCATCTGGCGAATGCTACCGGGGTCTCGCCAGACTCCGGCATC
GAGTTCGATCGCTGGACCCCGTCGGACACGGGTCTTAAAGCAAGCTTTCT
AGACC
BO11806.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:30:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14080-PB | 1236 | Mkp3-RB | 511..1233 | 17..739 | 3615 | 100 | Plus |
CG14080-PA | 726 | Mkp3-RA | 1..723 | 17..739 | 3615 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:22:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mkp3-RD | 4696 | CG14080-RD | 1214..1936 | 17..739 | 3615 | 100 | Plus |
Mkp3-RC | 3119 | CG14080-RC | 1214..1936 | 17..739 | 3615 | 100 | Plus |
Mkp3-RA | 2053 | CG14080-RA | 148..870 | 17..739 | 3615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:22:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19068915..19069284 | 739..370 | 1850 | 100 | Minus |
3L | 28110227 | 3L | 19069682..19069891 | 235..26 | 1050 | 100 | Minus |
3L | 28110227 | 3L | 19069487..19069624 | 371..234 | 690 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 01:22:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
I-element | 5371 | I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). | 1236..1272 | 106..141 | 110 | 81.1 | Plus |
BO11806.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:17:18 Download gff for
BO11806.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mkp3-PA | 1..726 | 17..742 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:45:16 Download gff for
BO11806.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14080-PA | 1..726 | 17..742 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:20:17 Download gff for
BO11806.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mkp3-RA | 140..870 | 7..739 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:31:30 Download gff for
BO11806.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mkp3-RA | 140..870 | 7..739 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:31:30 Download gff for
BO11806.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19068915..19069282 | 372..739 | 100 | <- | Minus |
3L | 19069487..19069622 | 236..371 | 100 | <- | Minus |
3L | 19069682..19069891 | 26..235 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:20:17 Download gff for
BO11806.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19062015..19062382 | 372..739 | 100 | <- | Minus |
arm_3L | 19062587..19062722 | 236..371 | 100 | <- | Minus |
arm_3L | 19062782..19062991 | 26..235 | 100 | | Minus |
BO11806.3prime Sequence
755 bp (754 high quality bases) assembled on 2006-04-19
> BO11806.3prime
ATGGTCTAGAAAGCTTGCTTTAAGACCCGTGTCCGACGGGGTCCAGCGAT
CGAACTCGATGCCGGAGTCTGGCGAGACCCCGGTAGCATTCGCCAGATGG
GTGGCCATAAAGCCCGTGGTCTGCATGCAATTGCAGTCCGGCGCAATGCA
GCTGCACGAGAACCTGGAGCCGGGTCTCAGGCGCAGTTGGCTCTCGAAGG
ACAGCAGCTGCTGCATGAAGTGGAAGTTGGGCGATACATCCGGCTTCCGG
TCCCGCACCATCGCGAAGGCGTCGTTGAGACTCAGGCCCCGCGTGTGCAT
CAAGTAGGCGAGCGTCACGGTCACCGAGCGCGAAACTCCGGCCAGGCAGT
GGACCAGCACCACCGAGCTTGCGGACCGCGCTTCCTCTATAAACTGTATG
GCATCCGGGAAATGTATGGCCAAATCTTGTGAGTAGTGATCCGTGATCGG
AATCTGCAGATACTTGATGTCGCCCGACTCCTTGAACTTATTTGGCAAAT
CTGGTGTCACATTCAAAACATACTTTATATTGTACTTTTTCAACGCTTCC
GAGTCGCAGCTGTGTGTGGCATTTCCCAGGAAGAGTAGTCCAGGGATTAT
CTCCACGGGCGCCTCGTTGTAGTTGTGGTGACTGTGGTGGTGGTGATGGT
GGCTGGAGCTCTCGCAATCCGACGATTCCGCCGAACTGCTGCACGCGGAA
TCGGATTGCGTTGTGGAAATGCGCAGGGACCTAAGACCCATGTCGACTGA
TAACT
BO11806.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:30:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14080-PB | 1236 | Mkp3-RB | 511..1233 | 741..19 | 3615 | 100 | Minus |
CG14080-PA | 726 | Mkp3-RA | 1..723 | 741..19 | 3615 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:33:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mkp3-RD | 4696 | CG14080-RD | 1214..1936 | 741..19 | 3615 | 100 | Minus |
Mkp3-RC | 3119 | CG14080-RC | 1214..1936 | 741..19 | 3615 | 100 | Minus |
Mkp3-RA | 2053 | CG14080-RA | 148..870 | 741..19 | 3615 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:33:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19068915..19069284 | 19..388 | 1850 | 100 | Plus |
3L | 28110227 | 3L | 19069682..19069891 | 523..732 | 1050 | 100 | Plus |
3L | 28110227 | 3L | 19069487..19069624 | 387..524 | 690 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 22:33:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
I-element | 5371 | I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). | 1236..1272 | 652..617 | 110 | 81.1 | Minus |
BO11806.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:17:17 Download gff for
BO11806.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mkp3-PA | 1..726 | 16..741 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:45:15 Download gff for
BO11806.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14080-PA | 1..726 | 16..741 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:56:57 Download gff for
BO11806.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mkp3-RA | 140..870 | 19..751 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:03:04 Download gff for
BO11806.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mkp3-RA | 140..870 | 19..751 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:03:04 Download gff for
BO11806.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19069682..19069891 | 523..732 | 100 | | Plus |
3L | 19068915..19069282 | 19..386 | 100 | <- | Plus |
3L | 19069487..19069622 | 387..522 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:56:57 Download gff for
BO11806.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19062015..19062382 | 19..386 | 100 | <- | Plus |
arm_3L | 19062587..19062722 | 387..522 | 100 | <- | Plus |
arm_3L | 19062782..19062991 | 523..732 | 100 | | Plus |
BO11806.complete Sequence
757 bp assembled on 2006-10-11
GenBank Submission: FJ638688
> BO11806.complete
GAAGTTATCAGTCGACATGGGTCTTAGGTCCCTGCGCATTTCCACAACGC
AATCCGATTCCGCGTGCAGCAGTTCGGCGGAATCGTCGGATTGCGAGAGC
TCCAGCCACCATCACCACCACCACAGTCACCACAACTACAACGAGGCGCC
CGTGGAGATAATCCCTGGACTACTCTTCCTGGGAAATGCCACACACAGCT
GCGACTCGGAAGCGTTGAAAAAGTACAATATAAAGTATGTTTTGAATGTG
ACACCAGATTTGCCAAATAAGTTCAAGGAGTCGGGCGACATCAAGTATCT
GCAGATTCCGATCACGGATCACTACTCACAAGATTTGGCCATACATTTCC
CGGATGCCATACAGTTTATAGAGGAAGCGCGGTCCGCAAGCTCGGTGGTG
CTGGTCCACTGCCTGGCCGGAGTTTCGCGCTCGGTGACCGTGACGCTCGC
CTACTTGATGCACACGCGGGGCCTGAGTCTCAACGACGCCTTCGCGATGG
TGCGGGACCGGAAGCCGGATGTATCGCCCAACTTCCACTTCATGCAGCAG
CTGCTGTCCTTCGAGAGCCAACTGCGCCTGAGACCCGGCTCCAGGTTCTC
GTGCAGCTGCATTGCGCCGGACTGCAATTGCATGCAGACCACGGGCTTTA
TGGCCACCCATCTGGCGAATGCTACCGGGGTCTCGCCAGACTCCGGCATC
GAGTTCGATCGCTGGACCCCGTCGGACACGGGTCTTAAAGCAAGCTTTCT
AGACCAT
BO11806.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:41:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mkp3-RD | 1236 | CG14080-PD | 511..1233 | 17..739 | 3615 | 100 | Plus |
Mkp3-RC | 1494 | CG14080-PC | 511..1233 | 17..739 | 3615 | 100 | Plus |
Mkp3-RA | 726 | CG14080-PA | 1..723 | 17..739 | 3615 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:41:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mkp3-RD | 4696 | CG14080-RD | 1214..1936 | 17..739 | 3615 | 100 | Plus |
Mkp3-RC | 3119 | CG14080-RC | 1214..1936 | 17..739 | 3615 | 100 | Plus |
Mkp3-RA | 2053 | CG14080-RA | 148..870 | 17..739 | 3615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:41:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19068915..19069284 | 739..370 | 1850 | 100 | Minus |
3L | 28110227 | 3L | 19069682..19069891 | 235..26 | 1050 | 100 | Minus |
3L | 28110227 | 3L | 19069487..19069624 | 371..234 | 690 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 10:41:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
I-element | 5371 | I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). | 1236..1272 | 106..141 | 110 | 81.1 | Plus |
BO11806.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:49:25 Download gff for
BO11806.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mkp3-RA | 1..726 | 17..742 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:04:25 Download gff for
BO11806.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mkp3-RA | 140..870 | 7..739 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:34:06 Download gff for
BO11806.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mkp3-RA | 148..870 | 17..741 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:49:26 Download gff for
BO11806.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mkp3-RA | 140..870 | 7..739 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:28:21 Download gff for
BO11806.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mkp3-RA | 148..870 | 17..741 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:28:21 Download gff for
BO11806.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19068912..19069282 | 372..741 | 99 | <- | Minus |
3L | 19069487..19069622 | 236..371 | 100 | <- | Minus |
3L | 19069682..19069891 | 26..235 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:34:06 Download gff for
BO11806.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19062012..19062382 | 372..741 | 99 | <- | Minus |
arm_3L | 19062587..19062722 | 236..371 | 100 | <- | Minus |
arm_3L | 19062782..19062991 | 26..235 | 100 | | Minus |
BO11806.pep Sequence
Translation from 16 to 757
> BO11806.pep
MGLRSLRISTTQSDSACSSSAESSDCESSSHHHHHHSHHNYNEAPVEIIP
GLLFLGNATHSCDSEALKKYNIKYVLNVTPDLPNKFKESGDIKYLQIPIT
DHYSQDLAIHFPDAIQFIEEARSASSVVLVHCLAGVSRSVTVTLAYLMHT
RGLSLNDAFAMVRDRKPDVSPNFHFMQQLLSFESQLRLRPGSRFSCSCIA
PDCNCMQTTGFMATHLANATGVSPDSGIEFDRWTPSDTGLKASFLDH
BO11806.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:48:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mkp3-PA | 241 | CG14080-PA | 1..241 | 1..241 | 1276 | 100 | Plus |
Mkp3-PD | 411 | CG14080-PD | 171..411 | 1..241 | 1276 | 100 | Plus |
Mkp3-PB | 411 | CG14080-PB | 171..411 | 1..241 | 1276 | 100 | Plus |
Mkp3-PC | 497 | CG14080-PC | 171..411 | 1..241 | 1276 | 100 | Plus |
puc-PA | 476 | CG7850-PA | 100..271 | 9..187 | 267 | 38 | Plus |