Clone Sequence Records
BO11807.3prime Sequence
828 bp (771 high quality bases) assembled on 2006-04-19
> BO11807.3prime
ATGGTCTAGAAAGCTTGGCGGCCAAGATGATCTGGCTCTTCTTGATCCAG
TCAACATACTGGCTGACCTTGCAGTAAACACCCGGATAGGGTGCCACGGT
GCAGGGCTTGATGCTCCACGACACGATGCCCACCTGCTGGCCATTGTAGA
TGAGGGGTCCACCCGAATCTCCGCTGCACTGTCCCTTGCCACCCTCGTCC
ACCCCTCCGCAGATGTGGTACCTGGGATCGGTGCGACCGCCATGGCGTTC
GGTGCACTCCTCGTCTGAGTAGACCTTCAATTCCACCTCCTGCAGTGTGG
ATTGGATGTATCCGCCAGTCGCATTGAGTCCCCATCCGATGAGCACCCCC
TCGCCACCGGCATCCGTTTGAGGTGTGGCAAAGGCGAGCTCCGGCAACTT
TACGGGTGCAACCGTGACGCCATCAAACTCGAATGGCTCCTCCACGAGCA
GCAGTGAAATATCGTTGGCATAGTTGTTGTAGGGATTATAATCCTCGTGC
TGGATGATCTTCTTCACGCGCACCACATTCGGACCGGTGGCATTAATCTT
AGTCACTCCATACTGAACAGACAAATCCGATGCCTTGCGTCCATCCGTAC
AATGAGCAGCAGTCATTACAAACTGCTTGGAAATAATGGAGCCACCGCAG
GAATGCGAGCCACTGGATCCACGCATCGAAATCACGAAGGGGTATTTCTC
CACGCTGGAATCCGTGCCATTGACCACACGACCCATTTGGGGAGCTCCAT
GGGAAATGCCCGCGGTGGTCAAGAGGGCGAATACCGCCAGGCAGAGATCC
TGATTCCGCGACATGTCGACTGATAACT
BO11807.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:30:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16749-PA | 798 | CG16749-RA | 1..795 | 814..20 | 3950 | 99.8 | Minus |
CG12951-PA | 798 | CG12951-RA | 628..773 | 187..42 | 505 | 93.8 | Minus |
CG12951-PA | 798 | CG12951-RA | 153..215 | 662..600 | 140 | 88.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:45:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16749-RA | 873 | CG16749-RA | 7..801 | 814..20 | 3960 | 99.9 | Minus |
CG12951-RA | 857 | CG12951-RA | 94..779 | 727..42 | 1060 | 77.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:45:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9331320..9331683 | 320..683 | 1805 | 99.7 | Plus |
3R | 32079331 | 3R | 9330957..9331257 | 20..320 | 1505 | 100 | Plus |
3R | 32079331 | 3R | 9329301..9329488 | 42..229 | 670 | 90.4 | Plus |
3R | 32079331 | 3R | 9331748..9331879 | 683..814 | 660 | 100 | Plus |
3R | 32079331 | 3R | 9329643..9329983 | 322..662 | 430 | 75.1 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:45:30 has no hits.
BO11807.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:17:19 Download gff for
BO11807.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16749-PA | 1..798 | 19..814 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:45:17 Download gff for
BO11807.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16749-PA | 1..798 | 19..814 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:28:34 Download gff for
BO11807.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16749-RA | 1..801 | 20..817 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:05:45 Download gff for
BO11807.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16749-RA | 1..801 | 20..817 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:05:45 Download gff for
BO11807.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9330957..9331256 | 20..319 | 100 | <- | Plus |
3R | 9331320..9331682 | 320..682 | 99 | <- | Plus |
3R | 9331748..9331879 | 683..814 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:28:34 Download gff for
BO11807.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5156679..5156978 | 20..319 | 100 | <- | Plus |
arm_3R | 5157042..5157404 | 320..682 | 99 | <- | Plus |
arm_3R | 5157470..5157601 | 683..814 | 100 | | Plus |
BO11807.5prime Sequence
828 bp (789 high quality bases) assembled on 2006-04-19
> BO11807.5prime
GAAGTTATCAGTCGACATGTCGCGGAATCAGGATCTCTGCCTGGCGGTAT
TCGCCCTCTTGACCACCGCGGGCATTTCCCATGGAGCTCCCCAAATGGGT
CGTGTGGTCAATGGCACGGATTCCAGCGTGGAGAAATACCCCTTCGTGAT
TTCGATGCGTGGATCCAGTGGCTCGCATTCCTGCGGTGGCTCCATTATTT
CCAAGCAGTTTGTAATGACTGCTGCTCATTGTACGGATGGACGCAAGGCA
TCGGATTTGTCTGTTCAGTATGGAGTGACTAAGATTAATGCCACCGGTCC
GAATGTGGTGCGCGTGAAGAAGATCATCCAGCACGAGGATTATAATCCCT
ACAACAACTATGCCAACGATATTTCACTGCTGCTCGTGGAGGAGCCATTC
GAGTTTGATGGCGTCACGGTTGCACCCGTAAAGTTGCCGGAGCTCGCCTT
TGCCACACCTCAAACGGATGCCGGTGGCGAGGGGGTGCTCATCGGATGGG
GACTCAATGCGACTGGCGGATACATCCAATCCACACTGCAGGAGGTGGAA
TTGAAGGTCTACTCAGACGAGGAGTGCACCGAACGCCATGGCGGTCGCAC
CGATCCCAGGTACCACATCTGCGGAGGGGTGGACGAGGGTGGCAAGGGAC
AGTGCAGCGGAGATTCGGGTGGACCCCTCATCTACAATGGCCAGCAGGTG
GGCATCGTGTCGTGGAGCATCAAGCCCTGCACCGTGGCACCCTATCCGGG
TGTTTACTGCAAGGTCAGCCAGTATGTTGACTGGATCAAGAAGAGCCAGA
TCATCTTGGCCGCCAAGCTTTCTAGACC
BO11807.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:30:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16749-PA | 798 | CG16749-RA | 1..795 | 17..811 | 3950 | 99.8 | Plus |
CG12951-PA | 798 | CG12951-RA | 628..773 | 644..789 | 505 | 93.8 | Plus |
CG12951-PA | 798 | CG12951-RA | 153..215 | 169..231 | 140 | 88.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:45:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16749-RA | 873 | CG16749-RA | 7..801 | 17..811 | 3960 | 99.9 | Plus |
CG12951-RA | 857 | CG12951-RA | 94..779 | 104..789 | 1060 | 77.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:44:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9331320..9331683 | 511..148 | 1805 | 99.7 | Minus |
3R | 32079331 | 3R | 9330957..9331257 | 811..511 | 1505 | 100 | Minus |
3R | 32079331 | 3R | 9329301..9329488 | 789..602 | 670 | 90.4 | Minus |
3R | 32079331 | 3R | 9331748..9331879 | 148..17 | 660 | 100 | Minus |
3R | 32079331 | 3R | 9329643..9329983 | 509..169 | 430 | 75.1 | Minus |
Blast to na_te.dros performed on 2015-02-13 09:44:59 has no hits.
BO11807.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:17:20 Download gff for
BO11807.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16749-PA | 1..798 | 17..812 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:45:19 Download gff for
BO11807.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16749-PA | 1..798 | 17..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:46:04 Download gff for
BO11807.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16749-RA | 1..801 | 14..811 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:08:32 Download gff for
BO11807.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16749-RA | 1..801 | 14..811 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:08:32 Download gff for
BO11807.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9331748..9331879 | 17..148 | 100 | | Minus |
3R | 9330957..9331256 | 512..811 | 100 | <- | Minus |
3R | 9331320..9331682 | 149..511 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:46:04 Download gff for
BO11807.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5156679..5156978 | 512..811 | 100 | <- | Minus |
arm_3R | 5157042..5157404 | 149..511 | 99 | <- | Minus |
arm_3R | 5157470..5157601 | 17..148 | 100 | | Minus |
BO11807.complete Sequence
830 bp assembled on 2008-08-15
> BO11807.complete
GAAGTTATCAGTCGACATGTCGCGGAATCAGGATCTCTGCCTGGCGGTAT
TCGCCCTCTTGACCACCGCGGGCATTTCCCATGGAGCTCCCCAAATGGGT
CGTGTGGTCAATGGCACGGATTCCAGCGTGGAGAAATACCCCTTCGTGAT
TTCGATGCGTGGATCCAGTGGCTCGCATTCCTGCGGTGGCTCCATTATTT
CCAAGCAGTTTGTAATGACTGCTGCTCATTGTACGGATGGACGCAAGGCA
TCGGATTTGTCTGTTCAGTATGGAGTGACTAAGATTAATGCCACCGGTCC
GAATGTGGTGCGCGTGAAGAAGATCATCCAGCACGAGGATTATAATCCCT
ACAACAACTATGCCAACGATATTTCACTGCTGCTCGTGGAGGAGCCATTC
GAGTTTGATGGCGTCACGGTTGCACCCGTAAAGTTGCCGGAGCTCGCCTT
TGCCACACCTCAAACGGATGCCGGTGGCGAGGGGGTGCTCATCGGATGGG
GACTCAATGCGACTGGCGGATACATCCAATCCACACTGCAGGAGGTGGAA
TTGAAGGTCTACTCAGACGAGGAGTGCACCGAACGCCATGGCGGTCGCAC
CGATCCCAGGTACCACATCTGCGGAGGGGTGGACGAGGGTGGCAAGGGAC
AGTGCAGCGGAGATTCGGGTGGACCCCTCATCTACAATGGCCAGCAGGTG
GGCATCGTGTCGTGGAGCATCAAGCCCTGCACCGTGGCACCCTATCCGGG
TGTTTACTGCAAGGTCAGCCAGTATGTTGACTGGATCAAGAAGAGCCAGA
TCATCTTGGCCGCCAAGCTTTCTAGACCAT
BO11807.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:15:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16749-RA | 798 | CG16749-PA | 1..795 | 17..811 | 3960 | 99.9 | Plus |
CG12951-RA | 798 | CG12951-PA | 88..773 | 104..789 | 1045 | 76.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:15:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16749-RA | 873 | CG16749-RA | 7..801 | 17..811 | 3960 | 99.9 | Plus |
CG12951-RA | 857 | CG12951-RA | 94..779 | 104..789 | 1045 | 76.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:15:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9331320..9331683 | 511..148 | 1805 | 99.7 | Minus |
3R | 32079331 | 3R | 9330957..9331257 | 811..511 | 1505 | 100 | Minus |
3R | 32079331 | 3R | 9329301..9329488 | 789..602 | 670 | 90.4 | Minus |
3R | 32079331 | 3R | 9331748..9331879 | 148..17 | 660 | 100 | Minus |
3R | 32079331 | 3R | 9329643..9329983 | 509..169 | 430 | 75.1 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:15:46 has no hits.
BO11807.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:07:41 Download gff for
BO11807.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16749-RA | 17..811 | 17..811 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:18 Download gff for
BO11807.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16749-RA | 7..801 | 17..814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:05:03 Download gff for
BO11807.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16749-RA | 17..811 | 17..814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:03:35 Download gff for
BO11807.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16749-RA | 7..801 | 17..814 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:03:35 Download gff for
BO11807.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9330952..9331256 | 512..814 | 99 | <- | Minus |
3R | 9331320..9331682 | 149..511 | 99 | <- | Minus |
3R | 9331748..9331879 | 17..148 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:18 Download gff for
BO11807.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5156674..5156978 | 512..814 | 99 | <- | Minus |
arm_3R | 5157042..5157404 | 149..511 | 99 | <- | Minus |
arm_3R | 5157470..5157601 | 17..148 | 100 | | Minus |
BO11807.pep Sequence
Translation from 16 to 829
> BO11807.pep
MSRNQDLCLAVFALLTTAGISHGAPQMGRVVNGTDSSVEKYPFVISMRGS
SGSHSCGGSIISKQFVMTAAHCTDGRKASDLSVQYGVTKINATGPNVVRV
KKIIQHEDYNPYNNYANDISLLLVEEPFEFDGVTVAPVKLPELAFATPQT
DAGGEGVLIGWGLNATGGYIQSTLQEVELKVYSDEECTERHGGRTDPRYH
ICGGVDEGGKGQCSGDSGGPLIYNGQQVGIVSWSIKPCTVAPYPGVYCKV
SQYVDWIKKSQIILAAKLSRP
BO11807.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:18:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16749-PA | 265 | CG16749-PA | 1..265 | 1..265 | 1408 | 100 | Plus |
CG12951-PA | 265 | CG12951-PA | 1..265 | 1..265 | 1088 | 75.8 | Plus |
CG32808-PA | 284 | CG32808-PA | 7..255 | 9..257 | 560 | 47.2 | Plus |
etaTry-PA | 262 | CG12386-PA | 9..258 | 9..261 | 385 | 36 | Plus |
CG31954-PA | 277 | CG31954-PA | 49..273 | 28..259 | 382 | 40.5 | Plus |