Clone Sequence Records
BO11811.3prime Sequence
589 bp (540 high quality bases) assembled on 2006-04-19
> BO11811.3prime
ATGGTCTAGAAAGCTTGCGACAGTCAGGGCGTAAAGGGGGAAGGGTGAGG
TCATGTCGATGCCCAGTTTCTTGATCACATAGTTGATCTGGTCCTGGCTC
TTCAGTCCGTAAGCCTCGAAGGGCTTCACATTAAAGCGACTGATGCGATT
TCCGGAGATGCCCATGAGGAACTTGTAGTAGCTGGGCCGCAGGGAACGAG
CCTCCAGGATTGCCGAGTGGAAGAGCACGGCCGTGAAGAATCCGTACATG
AGCATCGCAAAGTGCGGCACCTCGGGCAACTTGCCCTCCGCGATGCCCCA
GTTGTAGAGCAGATGCATGGACTTCCACATTAGATAACAGGCCACCGTGG
TGTTCGGGAAACGGAAGAAGCCAATCGATCCGATGAGGCCAGCCGGAATG
GCGAAGAGAGCATTGTCGAAACCAAACGTGTGACGCAGTCCGCAGGTAGT
CGACTTGAAAAGAAATGAGAAGATGCCCAGCGCCAATCCCAACTGCAAGG
ATCCCCCGTTGAAGATGTGCTTGCGCCACTGCATCTTAGACTTTAAGATC
TTGGGAATGTTGAGCAACAACTTTAAACCCACCGATAGG
BO11811.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:30:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31259-PA | 1368 | CG31259-RA | 795..1365 | 589..19 | 2755 | 99.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:14:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31259-RB | 2464 | CG31259-RB | 1272..1842 | 589..19 | 2795 | 99.3 | Minus |
CG31259-RA | 1919 | CG31259-RA | 1272..1842 | 589..19 | 2795 | 99.3 | Minus |
CG31454-RA | 1736 | CG31454-RA | 1170..1706 | 582..46 | 510 | 73.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:13:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8525609..8526045 | 455..19 | 2185 | 100 | Minus |
3R | 32079331 | 3R | 8525402..8525537 | 589..454 | 620 | 97.1 | Minus |
3R | 32079331 | 3R | 8523099..8523490 | 437..46 | 295 | 71.7 | Minus |
3R | 32079331 | 3R | 8522900..8523028 | 582..454 | 210 | 77.5 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:14:00 has no hits.
BO11811.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:17:27 Download gff for
BO11811.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31259-PA | 795..1368 | 18..589 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:45:29 Download gff for
BO11811.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31259-PA | 795..1368 | 18..589 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 21:29:17 Download gff for
BO11811.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31259-RA | 1272..1842 | 19..589 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:31:08 Download gff for
BO11811.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31259-RA | 1272..1842 | 19..589 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:31:08 Download gff for
BO11811.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8525402..8525537 | 454..589 | 97 | -> | Minus |
3R | 8525611..8526045 | 19..453 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 21:29:17 Download gff for
BO11811.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4351124..4351259 | 454..589 | 97 | -> | Minus |
arm_3R | 4351333..4351767 | 19..453 | 100 | | Minus |
BO11811.5prime Sequence
868 bp (785 high quality bases) assembled on 2006-04-19
> BO11811.5prime
GAAGTTATCAGTCGACATGGGCGCCCAAAGTAAACTGGCCGAGATAGCCT
TGAACTGCACCTGCTATGAGTATCACCATCCGTGGACAAAGAGCTGTGCC
TGCGCTGCGGCAGGAATGATGATCTCTGAGATCCCTCCCAGTCTGCGCAC
CTACGCCACTGTATACGTGTTTGCTCTAATCATGCGAGGACGCATTCCAT
CGCTGAAGGATCTGAGACGCACTGCATCTGGAATCCTACAGTCGACAGCG
TTTCTTTCGATGAATGGAGGCCTCTTTGTCTTTGCCGTGTGCTACTTGCG
ACAGATCTTGGGAGGATTCTACTTCGGCACAGTTGCTTGGCTGCCCTCGT
TTTTGGCCAGCTTTGCATGTCTTGCCTTCGAGCGTCCGGAACGCCGTGCT
CCTCTCGCATTGTATGTGGCCAATGTGGGTATCGAAACGCTGTGGAAGAT
GATGGAGGCACGAGGCTGGGTTCGATCCATTCCTAATGGACAGGTGTTCA
TCATGGGTGCAAGTGTGACCGCCTTGATGTATTTATATCGCGCCGGATTG
CACAAGACAGTGGCCAAGGATCCGACGTTCAAGGCTATTGCCCTGATCGT
GGGCAAAGAGGACGAGGGTCCACTGAAGACACCGGTGGTCACCACCACGC
AAAGCTCTCGCCAGGCTCCCCTCAACTTCCAAAGCATTTCAGCCTACGTA
CAGCTCTATGACCGCATGCTGAAGGCCAAACATCCAAGTTGTCCCCACAA
GAGGGGCTGTGTTCCCTACGCCCTTATTGGAGGACTAAAGCCATTCCTGG
GCGGTGTTGGCCTATCGGTGGGTCTAAAGCTGCTGCTCAACATTCCCAAG
ATCTTTAAGTCTAAGATG
BO11811.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:30:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31259-PA | 1368 | CG31259-RA | 1..852 | 17..868 | 4260 | 100 | Plus |
CG31454-PA | 1368 | CG31454-RA | 362..431 | 378..447 | 200 | 91.4 | Plus |
CG31454-PA | 1368 | CG31454-RA | 472..536 | 488..552 | 150 | 89.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:14:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31259-RB | 2464 | CG31259-RB | 477..1329 | 16..868 | 4265 | 100 | Plus |
CG31259-RA | 1919 | CG31259-RA | 477..1329 | 16..868 | 4265 | 100 | Plus |
CG31454-RA | 1736 | CG31454-RA | 591..980 | 239..628 | 630 | 78.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:14:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8524760..8525459 | 169..868 | 3500 | 100 | Plus |
3R | 32079331 | 3R | 8524420..8524573 | 16..169 | 770 | 100 | Plus |
3R | 32079331 | 3R | 8522321..8522710 | 239..628 | 630 | 77.4 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:14:16 has no hits.
BO11811.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:17:28 Download gff for
BO11811.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31259-PA | 1..852 | 17..868 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:45:30 Download gff for
BO11811.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31259-PA | 1..852 | 17..868 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:52:03 Download gff for
BO11811.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31259-RA | 470..1329 | 10..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:57:02 Download gff for
BO11811.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31259-RA | 470..1329 | 10..868 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:57:02 Download gff for
BO11811.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8524413..8524573 | 10..169 | 98 | -> | Plus |
3R | 8524761..8525459 | 170..868 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:52:03 Download gff for
BO11811.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4350135..4350295 | 10..169 | 98 | -> | Plus |
arm_3R | 4350483..4351181 | 170..868 | 100 | | Plus |
BO11811.complete Sequence
1399 bp assembled on 2007-10-17
GenBank Submission: FJ632204
> BO11811.complete
GAAGTTATCAGTCGACATGGGCGCCCAAAGTAAACTGGCCGAGATAGCCT
TGAACTGCACCTGCTATGAGTATCACCATCCGTGGACAAAGAGCTGTGCC
TGCGCTGCGGCAGGAATGATGATCTCTGAGATCCCTCCCAGTCTGCGCAC
CTACGCCACTGTATACGTGTTTGCTCTAATCATGCGAGGACGCATTCCAT
CGCTGAAGGATCTGAGACGCACTGCATCTGGAATCCTACAGTCGACAGCG
TTTCTTTCGATGAATGGAGGCCTCTTTGTCTTTGCCGTGTGCTACTTGCG
ACAGATCTTGGGAGGATTCTACTTCGGCACAGTTGCTTGGCTGCCCTCGT
TTTTGGCCAGCTTTGCATGTCTTGCCTTCGAGCGTCCGGAACGCCGTGCT
CCTCTCGCATTGTATGTGGCCAATGTGGGTATCGAAACGCTGTGGAAGAT
GATGGAGGCACGAGGCTGGGTTCGATCCATTCCTAATGGACAGGTGTTCA
TCATGGGTGCAAGTGTGACCGCCTTGATGTATTTATATCGCGCCGGATTG
CACAAGACAGTGGCCAAGGATCCGACGTTCAAGGCTATTGCCCTGATCGT
GGGCAAAGAGGACGAGGGTCCACTGAAGACACCGGTGGTCACCACCACGC
AAAGCTCTCGCCAGGCTCCCCTCAACTTCCAAAGCATTTCAGCCTACGTA
CAGCTCTATGACCGCATGCTGAAGGCCAAACATCCAAGTTGTCCCCACAA
GAGGGGCTGTGTTCCCTACGCCCTTATTGGAGGACTAAAGCCATTCCTGG
GCGGTGTTGGCCTATCGGTGGGTCTAAAGCTGCTGCTCAACATTCCCAAG
ATCTTTAAGTCTAAGATGCAGTGGCGCAAGCACATCTTCAACGGGGGATC
CTTGCAGTTGGGATTGGCGCTGGGCATCTTCTCATTTCTTTTCAAGTCGA
CTACCTGCGGACTGCGTCACACGTTTGGTTTCGACAATGCTCTCTTCGCC
ATTCCGGCTGGCCTCATCGGATCGATTGGCTTCTTCCGTTTCCCGAACAC
CACGGTGGCCTGTTATCTAATGTGGAAGTCCATGCATCTGCTCTACAACT
GGGGCATCGCGGAGGGCAAGTTGCCCGAGGTGCCGCACTTTGCGATGCTC
ATGTACGGATTCTTCACGGCCGTGCTCTTCCACTCGGCAATCCTGGAGGC
TCGTTCCCTGCGGCCCAGCTACTACAAGTTCCTCATGGGCATCTCCGGAA
ATCGCATCAGTCGCTTTAATGTGAAGCCCTTCGAGGCTTACGGACTGAAG
AGCCAGGACCAGATCAACTATGTGATCAAGAAACTGGGCATCGACATGAC
CTCACCCTTCCCCCTTTACGCCCTGACTGTCGCAAGCTTTCTAGACCAT
BO11811.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:56:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31259-RB | 1368 | CG31259-PB | 1..1365 | 17..1381 | 6825 | 100 | Plus |
CG31259-RA | 1368 | CG31259-PA | 1..1365 | 17..1381 | 6825 | 100 | Plus |
CG31454-RA | 1368 | CG31454-PA | 223..1338 | 239..1354 | 915 | 72.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:56:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31259-RB | 2464 | CG31259-RB | 477..1842 | 16..1381 | 6830 | 100 | Plus |
CG31259-RA | 1919 | CG31259-RA | 477..1842 | 16..1381 | 6830 | 100 | Plus |
CG31454-RA | 1736 | CG31454-RA | 591..1706 | 239..1354 | 915 | 72.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:56:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8524760..8525537 | 169..946 | 3890 | 100 | Plus |
3R | 32079331 | 3R | 8525609..8526045 | 945..1381 | 2185 | 100 | Plus |
3R | 32079331 | 3R | 8524420..8524573 | 16..169 | 770 | 100 | Plus |
3R | 32079331 | 3R | 8522321..8523028 | 239..946 | 660 | 72.9 | Plus |
3R | 32079331 | 3R | 8523099..8523490 | 963..1354 | 295 | 71.7 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:56:49 has no hits.
BO11811.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:59:06 Download gff for
BO11811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31259-RA | 1..1368 | 17..1382 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:10:53 Download gff for
BO11811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31259-RA | 468..1840 | 10..1381 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:29:27 Download gff for
BO11811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31259-RA | 478..1842 | 17..1383 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:47:07 Download gff for
BO11811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31259-RA | 476..1840 | 17..1383 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:59:43 Download gff for
BO11811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31259-RA | 478..1842 | 17..1383 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:59:43 Download gff for
BO11811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8524421..8524573 | 17..169 | 100 | -> | Plus |
3R | 8524761..8525537 | 170..946 | 100 | -> | Plus |
3R | 8525611..8526045 | 947..1383 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:29:27 Download gff for
BO11811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4350143..4350295 | 17..169 | 100 | -> | Plus |
arm_3R | 4350483..4351259 | 170..946 | 100 | -> | Plus |
arm_3R | 4351333..4351767 | 947..1383 | 99 | | Plus |
BO11811.pep Sequence
Translation from 16 to 1399
> BO11811.pep
MGAQSKLAEIALNCTCYEYHHPWTKSCACAAAGMMISEIPPSLRTYATVY
VFALIMRGRIPSLKDLRRTASGILQSTAFLSMNGGLFVFAVCYLRQILGG
FYFGTVAWLPSFLASFACLAFERPERRAPLALYVANVGIETLWKMMEARG
WVRSIPNGQVFIMGASVTALMYLYRAGLHKTVAKDPTFKAIALIVGKEDE
GPLKTPVVTTTQSSRQAPLNFQSISAYVQLYDRMLKAKHPSCPHKRGCVP
YALIGGLKPFLGGVGLSVGLKLLLNIPKIFKSKMQWRKHIFNGGSLQLGL
ALGIFSFLFKSTTCGLRHTFGFDNALFAIPAGLIGSIGFFRFPNTTVACY
LMWKSMHLLYNWGIAEGKLPEVPHFAMLMYGFFTAVLFHSAILEARSLRP
SYYKFLMGISGNRISRFNVKPFEAYGLKSQDQINYVIKKLGIDMTSPFPL
YALTVASFLDH
BO11811.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:51:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31259-PB | 455 | CG31259-PB | 1..455 | 1..455 | 2389 | 100 | Plus |
CG31259-PA | 455 | CG31259-PA | 1..455 | 1..455 | 2389 | 100 | Plus |
CG31454-PA | 455 | CG31454-PA | 1..455 | 1..455 | 1648 | 67.3 | Plus |
CG11737-PC | 455 | CG11737-PC | 1..452 | 1..452 | 1187 | 50.5 | Plus |
CG11737-PB | 455 | CG11737-PB | 1..452 | 1..452 | 1187 | 50.5 | Plus |