Clone BO11811 Report

Search the DGRC for BO11811

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:118
Well:11
Vector:pDNR-Dual
Associated Gene/TranscriptCG31259-RA
Protein status:BO11811.pep: validated full length
Sequenced Size:1399

Clone Sequence Records

BO11811.3prime Sequence

589 bp (540 high quality bases) assembled on 2006-04-19

> BO11811.3prime
ATGGTCTAGAAAGCTTGCGACAGTCAGGGCGTAAAGGGGGAAGGGTGAGG
TCATGTCGATGCCCAGTTTCTTGATCACATAGTTGATCTGGTCCTGGCTC
TTCAGTCCGTAAGCCTCGAAGGGCTTCACATTAAAGCGACTGATGCGATT
TCCGGAGATGCCCATGAGGAACTTGTAGTAGCTGGGCCGCAGGGAACGAG
CCTCCAGGATTGCCGAGTGGAAGAGCACGGCCGTGAAGAATCCGTACATG
AGCATCGCAAAGTGCGGCACCTCGGGCAACTTGCCCTCCGCGATGCCCCA
GTTGTAGAGCAGATGCATGGACTTCCACATTAGATAACAGGCCACCGTGG
TGTTCGGGAAACGGAAGAAGCCAATCGATCCGATGAGGCCAGCCGGAATG
GCGAAGAGAGCATTGTCGAAACCAAACGTGTGACGCAGTCCGCAGGTAGT
CGACTTGAAAAGAAATGAGAAGATGCCCAGCGCCAATCCCAACTGCAAGG
ATCCCCCGTTGAAGATGTGCTTGCGCCACTGCATCTTAGACTTTAAGATC
TTGGGAATGTTGAGCAACAACTTTAAACCCACCGATAGG

BO11811.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:30:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG31259-PA 1368 CG31259-RA 795..1365 589..19 2755 99.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:14:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG31259-RB 2464 CG31259-RB 1272..1842 589..19 2795 99.3 Minus
CG31259-RA 1919 CG31259-RA 1272..1842 589..19 2795 99.3 Minus
CG31454-RA 1736 CG31454-RA 1170..1706 582..46 510 73.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:13:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8525609..8526045 455..19 2185 100 Minus
3R 32079331 3R 8525402..8525537 589..454 620 97.1 Minus
3R 32079331 3R 8523099..8523490 437..46 295 71.7 Minus
3R 32079331 3R 8522900..8523028 582..454 210 77.5 Minus
Blast to na_te.dros performed on 2015-02-12 17:14:00 has no hits.

BO11811.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:17:27 Download gff for BO11811.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31259-PA 795..1368 18..589 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:45:29 Download gff for BO11811.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31259-PA 795..1368 18..589 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 21:29:17 Download gff for BO11811.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31259-RA 1272..1842 19..589 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:31:08 Download gff for BO11811.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31259-RA 1272..1842 19..589 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:31:08 Download gff for BO11811.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 8525402..8525537 454..589 97 -> Minus
3R 8525611..8526045 19..453 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 21:29:17 Download gff for BO11811.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4351124..4351259 454..589 97 -> Minus
arm_3R 4351333..4351767 19..453 100   Minus

BO11811.5prime Sequence

868 bp (785 high quality bases) assembled on 2006-04-19

> BO11811.5prime
GAAGTTATCAGTCGACATGGGCGCCCAAAGTAAACTGGCCGAGATAGCCT
TGAACTGCACCTGCTATGAGTATCACCATCCGTGGACAAAGAGCTGTGCC
TGCGCTGCGGCAGGAATGATGATCTCTGAGATCCCTCCCAGTCTGCGCAC
CTACGCCACTGTATACGTGTTTGCTCTAATCATGCGAGGACGCATTCCAT
CGCTGAAGGATCTGAGACGCACTGCATCTGGAATCCTACAGTCGACAGCG
TTTCTTTCGATGAATGGAGGCCTCTTTGTCTTTGCCGTGTGCTACTTGCG
ACAGATCTTGGGAGGATTCTACTTCGGCACAGTTGCTTGGCTGCCCTCGT
TTTTGGCCAGCTTTGCATGTCTTGCCTTCGAGCGTCCGGAACGCCGTGCT
CCTCTCGCATTGTATGTGGCCAATGTGGGTATCGAAACGCTGTGGAAGAT
GATGGAGGCACGAGGCTGGGTTCGATCCATTCCTAATGGACAGGTGTTCA
TCATGGGTGCAAGTGTGACCGCCTTGATGTATTTATATCGCGCCGGATTG
CACAAGACAGTGGCCAAGGATCCGACGTTCAAGGCTATTGCCCTGATCGT
GGGCAAAGAGGACGAGGGTCCACTGAAGACACCGGTGGTCACCACCACGC
AAAGCTCTCGCCAGGCTCCCCTCAACTTCCAAAGCATTTCAGCCTACGTA
CAGCTCTATGACCGCATGCTGAAGGCCAAACATCCAAGTTGTCCCCACAA
GAGGGGCTGTGTTCCCTACGCCCTTATTGGAGGACTAAAGCCATTCCTGG
GCGGTGTTGGCCTATCGGTGGGTCTAAAGCTGCTGCTCAACATTCCCAAG
ATCTTTAAGTCTAAGATG

BO11811.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:30:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG31259-PA 1368 CG31259-RA 1..852 17..868 4260 100 Plus
CG31454-PA 1368 CG31454-RA 362..431 378..447 200 91.4 Plus
CG31454-PA 1368 CG31454-RA 472..536 488..552 150 89.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:14:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG31259-RB 2464 CG31259-RB 477..1329 16..868 4265 100 Plus
CG31259-RA 1919 CG31259-RA 477..1329 16..868 4265 100 Plus
CG31454-RA 1736 CG31454-RA 591..980 239..628 630 78.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:14:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8524760..8525459 169..868 3500 100 Plus
3R 32079331 3R 8524420..8524573 16..169 770 100 Plus
3R 32079331 3R 8522321..8522710 239..628 630 77.4 Plus
Blast to na_te.dros performed on 2015-02-12 05:14:16 has no hits.

BO11811.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:17:28 Download gff for BO11811.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31259-PA 1..852 17..868 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:45:30 Download gff for BO11811.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31259-PA 1..852 17..868 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:52:03 Download gff for BO11811.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31259-RA 470..1329 10..868 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:57:02 Download gff for BO11811.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31259-RA 470..1329 10..868 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:57:02 Download gff for BO11811.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 8524413..8524573 10..169 98 -> Plus
3R 8524761..8525459 170..868 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:52:03 Download gff for BO11811.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4350135..4350295 10..169 98 -> Plus
arm_3R 4350483..4351181 170..868 100   Plus

BO11811.complete Sequence

1399 bp assembled on 2007-10-17

GenBank Submission: FJ632204

> BO11811.complete
GAAGTTATCAGTCGACATGGGCGCCCAAAGTAAACTGGCCGAGATAGCCT
TGAACTGCACCTGCTATGAGTATCACCATCCGTGGACAAAGAGCTGTGCC
TGCGCTGCGGCAGGAATGATGATCTCTGAGATCCCTCCCAGTCTGCGCAC
CTACGCCACTGTATACGTGTTTGCTCTAATCATGCGAGGACGCATTCCAT
CGCTGAAGGATCTGAGACGCACTGCATCTGGAATCCTACAGTCGACAGCG
TTTCTTTCGATGAATGGAGGCCTCTTTGTCTTTGCCGTGTGCTACTTGCG
ACAGATCTTGGGAGGATTCTACTTCGGCACAGTTGCTTGGCTGCCCTCGT
TTTTGGCCAGCTTTGCATGTCTTGCCTTCGAGCGTCCGGAACGCCGTGCT
CCTCTCGCATTGTATGTGGCCAATGTGGGTATCGAAACGCTGTGGAAGAT
GATGGAGGCACGAGGCTGGGTTCGATCCATTCCTAATGGACAGGTGTTCA
TCATGGGTGCAAGTGTGACCGCCTTGATGTATTTATATCGCGCCGGATTG
CACAAGACAGTGGCCAAGGATCCGACGTTCAAGGCTATTGCCCTGATCGT
GGGCAAAGAGGACGAGGGTCCACTGAAGACACCGGTGGTCACCACCACGC
AAAGCTCTCGCCAGGCTCCCCTCAACTTCCAAAGCATTTCAGCCTACGTA
CAGCTCTATGACCGCATGCTGAAGGCCAAACATCCAAGTTGTCCCCACAA
GAGGGGCTGTGTTCCCTACGCCCTTATTGGAGGACTAAAGCCATTCCTGG
GCGGTGTTGGCCTATCGGTGGGTCTAAAGCTGCTGCTCAACATTCCCAAG
ATCTTTAAGTCTAAGATGCAGTGGCGCAAGCACATCTTCAACGGGGGATC
CTTGCAGTTGGGATTGGCGCTGGGCATCTTCTCATTTCTTTTCAAGTCGA
CTACCTGCGGACTGCGTCACACGTTTGGTTTCGACAATGCTCTCTTCGCC
ATTCCGGCTGGCCTCATCGGATCGATTGGCTTCTTCCGTTTCCCGAACAC
CACGGTGGCCTGTTATCTAATGTGGAAGTCCATGCATCTGCTCTACAACT
GGGGCATCGCGGAGGGCAAGTTGCCCGAGGTGCCGCACTTTGCGATGCTC
ATGTACGGATTCTTCACGGCCGTGCTCTTCCACTCGGCAATCCTGGAGGC
TCGTTCCCTGCGGCCCAGCTACTACAAGTTCCTCATGGGCATCTCCGGAA
ATCGCATCAGTCGCTTTAATGTGAAGCCCTTCGAGGCTTACGGACTGAAG
AGCCAGGACCAGATCAACTATGTGATCAAGAAACTGGGCATCGACATGAC
CTCACCCTTCCCCCTTTACGCCCTGACTGTCGCAAGCTTTCTAGACCAT

BO11811.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:56:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG31259-RB 1368 CG31259-PB 1..1365 17..1381 6825 100 Plus
CG31259-RA 1368 CG31259-PA 1..1365 17..1381 6825 100 Plus
CG31454-RA 1368 CG31454-PA 223..1338 239..1354 915 72.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:56:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG31259-RB 2464 CG31259-RB 477..1842 16..1381 6830 100 Plus
CG31259-RA 1919 CG31259-RA 477..1842 16..1381 6830 100 Plus
CG31454-RA 1736 CG31454-RA 591..1706 239..1354 915 72.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:56:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8524760..8525537 169..946 3890 100 Plus
3R 32079331 3R 8525609..8526045 945..1381 2185 100 Plus
3R 32079331 3R 8524420..8524573 16..169 770 100 Plus
3R 32079331 3R 8522321..8523028 239..946 660 72.9 Plus
3R 32079331 3R 8523099..8523490 963..1354 295 71.7 Plus
Blast to na_te.dros performed on 2014-11-27 13:56:49 has no hits.

BO11811.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:59:06 Download gff for BO11811.complete
Subject Subject Range Query Range Percent Splice Strand
CG31259-RA 1..1368 17..1382 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:10:53 Download gff for BO11811.complete
Subject Subject Range Query Range Percent Splice Strand
CG31259-RA 468..1840 10..1381 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:29:27 Download gff for BO11811.complete
Subject Subject Range Query Range Percent Splice Strand
CG31259-RA 478..1842 17..1383 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:47:07 Download gff for BO11811.complete
Subject Subject Range Query Range Percent Splice Strand
CG31259-RA 476..1840 17..1383 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:59:43 Download gff for BO11811.complete
Subject Subject Range Query Range Percent Splice Strand
CG31259-RA 478..1842 17..1383 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:59:43 Download gff for BO11811.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8524421..8524573 17..169 100 -> Plus
3R 8524761..8525537 170..946 100 -> Plus
3R 8525611..8526045 947..1383 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:29:27 Download gff for BO11811.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4350143..4350295 17..169 100 -> Plus
arm_3R 4350483..4351259 170..946 100 -> Plus
arm_3R 4351333..4351767 947..1383 99   Plus

BO11811.pep Sequence

Translation from 16 to 1399

> BO11811.pep
MGAQSKLAEIALNCTCYEYHHPWTKSCACAAAGMMISEIPPSLRTYATVY
VFALIMRGRIPSLKDLRRTASGILQSTAFLSMNGGLFVFAVCYLRQILGG
FYFGTVAWLPSFLASFACLAFERPERRAPLALYVANVGIETLWKMMEARG
WVRSIPNGQVFIMGASVTALMYLYRAGLHKTVAKDPTFKAIALIVGKEDE
GPLKTPVVTTTQSSRQAPLNFQSISAYVQLYDRMLKAKHPSCPHKRGCVP
YALIGGLKPFLGGVGLSVGLKLLLNIPKIFKSKMQWRKHIFNGGSLQLGL
ALGIFSFLFKSTTCGLRHTFGFDNALFAIPAGLIGSIGFFRFPNTTVACY
LMWKSMHLLYNWGIAEGKLPEVPHFAMLMYGFFTAVLFHSAILEARSLRP
SYYKFLMGISGNRISRFNVKPFEAYGLKSQDQINYVIKKLGIDMTSPFPL
YALTVASFLDH

BO11811.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:51:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG31259-PB 455 CG31259-PB 1..455 1..455 2389 100 Plus
CG31259-PA 455 CG31259-PA 1..455 1..455 2389 100 Plus
CG31454-PA 455 CG31454-PA 1..455 1..455 1648 67.3 Plus
CG11737-PC 455 CG11737-PC 1..452 1..452 1187 50.5 Plus
CG11737-PB 455 CG11737-PB 1..452 1..452 1187 50.5 Plus