Clone Sequence Records
BO11815.3prime Sequence
877 bp (840 high quality bases) assembled on 2006-04-19
> BO11815.3prime
ATGGTCTAGAAAGCTTGCGAAGTCCGTTTCTGGGCTCTGTGGCCTCGGAC
TCTCAGGTTGCGGTTGATGGTTTGGATGAAGGTCTCTGGTTATCGGAAGC
ACAGCTTGGACCTGCGGTTGGGTGACCACCACATCGTCGGTGTCTACAGT
GTCTAGACCCCTGTCCGCCTCCTGTTTGGGAGGATTGAAGGACTTCAGGT
TGCCCAACTGGCTGCGAACGTCCGACTCGGAGAGCAGATGCAATGGTACG
TTCGCTGGGACGGCCAACCGCTTGGGACTGGTGCTACCATCATCTGGCTT
ACGTCTGTCTGGTGGAAAGACCACTTGTGCATAGGTGACCCCACTCTCAC
TGGGCTCCACAATGCTCTGTGCTCCACCCGATGAAGTAGTCACCGAACTG
GGATTCCTGAATACCGCTGTCTCTGTCCGTGGTTCTGGAGCGGCATCTCT
GCGTTGAATGGGCGATGAGGTGGTGGTGGTGGTTACTGGACTTCCTCCAC
GTGGAGCACTGGGCGACGTTGTCGCATCCTCATGCGGAATTGGTGCGTAC
AGAGAGGGTGTGTAATTATTGTCCGTCACCTTGCAGTTGTAAAGATTGAG
TCCTTTGGCGAATATGTATACGAGTATGTCGAAAAGCACACTGGCCAGGA
TCAATGAGGCTGTGAGAATATCGAGGATGTTGCCATGCTTCGGCGTTTCT
CGCAGCAGACAGCGCTCGTAGTTGGGTGCCCAGTAAACGCAGGTTGTACG
GGTGACAATGTCGTAGCTGAGATGCACTGGAACATAGGCGAAAAGGCCCA
CGATCATTAGTTCAAAGGCCAGGGCCAATGACTTATCCTGTGGCAGGACA
GCTCGCATTGTGATCATCGTCTTTCCT
BO11815.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:31:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6417-PA | 2445 | Oatp33Eb-RA | 1584..2442 | 877..19 | 4245 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:30:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Oatp33Eb-RA | 2743 | CG6417-RA | 1762..2620 | 877..19 | 4265 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:30:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12451194..12451924 | 749..19 | 3655 | 100 | Minus |
2L | 23513712 | 2L | 12451002..12451131 | 877..748 | 620 | 98.5 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:30:45 has no hits.
BO11815.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:17:33 Download gff for
BO11815.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6417-PA | 1584..2445 | 15..877 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:45:38 Download gff for
BO11815.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6417-PA | 1584..2445 | 15..877 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:56:41 Download gff for
BO11815.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oatp33Eb-RA | 1762..2623 | 15..877 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:02:31 Download gff for
BO11815.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oatp33Eb-RA | 1762..2623 | 15..877 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:02:31 Download gff for
BO11815.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12451002..12451129 | 750..877 | 98 | -> | Minus |
2L | 12451194..12451927 | 15..749 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:56:41 Download gff for
BO11815.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12451002..12451129 | 750..877 | 98 | -> | Minus |
arm_2L | 12451194..12451927 | 15..749 | 99 | | Minus |
BO11815.5prime Sequence
902 bp (778 high quality bases) assembled on 2006-04-19
> BO11815.5prime
GAAGTTATCAGTCGACATGGCGCATAATACGCGCAACTCCGATTTATCGC
AGATAGCTGTCAATGCCAACAATATACCCGATGACAGCGTCGATTGTGGC
ATCAAGGGTCTGGGATGGTGTCGCGGTCCCGGATGCCAGAAATATGCCCG
ACTGCGCACCTTCATCCTGGTACTGGCCATCTCGGGAACCCTACAGGGCG
CCTGCGAATCCTACTTCCGCGTGTCGGCCAAACAGGCTTCCTTTCAGTTC
GGTTGGAATCCACTGATTGTGGATTGGCTGCTGGTGGCCAGTGGATTATT
CCAGGCGGTCTTTGCGTTGGCTTTCGCCTACTGGGCGGACGTCTATCATC
CCATCAAATGGCTGGTGGGAACTCTGATGCTGCAGGCGGTCACCTGTGTG
GTGGCTGTGATTCCCTCCATTATGAACTTTGCCGATGGCAACCAGGCAAA
GGATGCTCTGCTGGATGCCAATATGTGCGCCACATCCTTGGCACAGTTCC
AAAGGCTCACACTGACCGAGGCCCAGAGCAGCAGCCTAACCCTTGCGATG
CTCTTCGTTCTTCAGCTGGCCTTGGGAATGGGAGGATTGGCCTACTACAC
GCTGGGGGTTAGCTACATCGACGACAACTCCCTGTCCCAAGATAGTCCGG
CGGTGATAGGTGCTGCTCTGGCTGCGCGCGTATTTGGCCAGCAGGCTGGA
TCCTTCCTAGTGCTTGGCGTTGGTCTCACCCATGTGGGTTGGTGGCTCGG
TTGGGTGATACTGGCACCCTTCATTTTCGTGGGCGCTGTGCTCCTGGGAC
TGTTTCCCAAACGACTGCCCAAGACCGTCATTCACCAGGCGGCGCAACGG
ATCATTGAGCAGTCCAGCATGCGTAGGTTTGGCAGCCAGTTCTCCACTAT
AT
BO11815.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:31:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6417-PA | 2445 | Oatp33Eb-RA | 1..878 | 17..894 | 4365 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:46:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Oatp33Eb-RA | 2743 | CG6417-RA | 179..1065 | 17..902 | 4380 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:46:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12449832..12450296 | 430..894 | 2310 | 99.8 | Plus |
2L | 23513712 | 2L | 12448806..12448995 | 83..272 | 950 | 100 | Plus |
2L | 23513712 | 2L | 12449596..12449753 | 272..429 | 790 | 100 | Plus |
2L | 23513712 | 2L | 12448662..12448728 | 17..83 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:46:18 has no hits.
BO11815.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:17:34 Download gff for
BO11815.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6417-PA | 1..885 | 17..902 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:45:39 Download gff for
BO11815.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6417-PA | 1..885 | 17..902 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 11:13:37 Download gff for
BO11815.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oatp33Eb-RA | 179..1063 | 17..902 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:14:56 Download gff for
BO11815.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oatp33Eb-RA | 179..1063 | 17..902 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:14:56 Download gff for
BO11815.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12448662..12448728 | 17..83 | 100 | -> | Plus |
2L | 12448807..12448995 | 84..272 | 100 | -> | Plus |
2L | 12449597..12449753 | 273..429 | 100 | -> | Plus |
2L | 12449832..12450303 | 430..902 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 11:13:37 Download gff for
BO11815.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12448807..12448995 | 84..272 | 100 | -> | Plus |
arm_2L | 12449597..12449753 | 273..429 | 100 | -> | Plus |
arm_2L | 12448662..12448728 | 17..83 | 100 | -> | Plus |
arm_2L | 12449832..12450303 | 430..902 | 99 | | Plus |
BO11815.complete Sequence
2476 bp assembled on 2008-01-17
GenBank Submission: FJ632206
> BO11815.complete
GAAGTTATCAGTCGACATGGCGCATAATACGCGCAACTCCGATTTATCGC
AGATAGCTGTCAATGCCAACAATATACCCGATGACAGCGTCGATTGTGGC
ATCAAGGGTCTGGGATGGTGTCGCGGTCCCGGATGCCAGAAATATGCCCG
ACTGCGCACCTTCATCCTGGTACTGGCCATCTCGGGAACCCTACAGGGCG
CCTGCGAATCCTACTTCCGCGTGTCGGCCAAACAGGCTTCCTTTCAGTTC
GGTTGGAATCCACTGATTGTGGATTGGCTGCTGGTGGCCAGTGGATTATT
CCAGGCGGTCTTTGCGTTGGCTTTCGCCTACTGGGCGGACGTCTATCATC
CCATCAAATGGCTGGTGGGAACTCTGATGCTGCAGGCGGTCACCTGTGTG
GTGGCTGTGATTCCCTCCATTATGAACTTTGCCGATGGCAACCAGGCAAA
GGATGCTCTGCTGGATGCCAATATGTGCGCCACATCCTTGGCACAGTTCC
AAAGGCTCACACTGACCGAGGCCCAGAGCAGCAGCCTAACCCTTGCGATG
CTCTTCGTTCTTCAGCTGGCCTTGGGAATGGGAGGATTGGCCTACTACAC
GCTGGGGGTTAGCTACATCGACGACAACTCCCTGTCCCAAGATAGTCCGG
CGGTGATAGGTGCTGCTCTGGCTGCGCGCGTATTTGGCCAGCAGGCTGGA
TCCTTCCTAGTGCTTGGCGTTGGTCTCACCCATGTGGGTTGGTGGCTCGG
TTGGGTGATACTGGCACCCTTCATTTTCGTGGGCGCTGTGCTCCTGGGAC
TGTTTCCCAAACGACTGCCAAAGACCGTCATTCACCAGGCGGCGCAACGG
ATCATTGAGCAGTCCAGCATGCGTAGGTTTGGCAGCCAGTTCTCAACATA
TATGGATGACTCCGATTTTTGGCCATCTCTGAAGAGGCTATTCAATAACC
GCCTACTGATGTTCAATCTGTTGAGCATCATGTGCGTGCAGAGTGCAGTC
GTGAACTATGGCCTCCAGGAGGAGAGCTATCTGCAGAGCAGATTCTTTTT
GCCCTACAACGAACAGGATGGCTTGGCGGCAGAGTGGAGATCGGCATTCG
TTTCCTATTTCCTCAAGCCGCCAGTTATGGCATTGGGAATGCTGATAAGT
GGCCTGGTCATCTCGAAGGCCAAGTTATCTGCTCGTAAAATCACCGGTAT
AAACATAGCCCTCAGTATACATCTGGTAGCGATTTTCATCGGCCTGATCT
TTGTCCAGTGCGATGTGGGCGCCATTGCTGGTGTGGAGGGTGGTAAGCTA
AAACAGCCCTATTGCTCCAGTCAGTGCCTATGCACACCCACTGCCTTCAT
GCCCGTGTGTCCGGAAAACAGTTCCGTCACCTACTTCTCGCCCTGCTACG
CGGGTTGCACCAAAAAGACCACCATCAATAGCTTTCAGTTGTTCGAGGGC
TGCAGCTGCAGCGGGGATCAGTCCTTGAATTCCACTGGTCAGATGAGGGC
AACCGCTGGAGCTTGCAGCTCCGACAATTGCCAGAGTGCCATCATCATCT
TCCAGATCATGAGCATTTCGGTGGCATTTCTAATGGGCGTCGGAGCCATA
GGAAAGACGTTGATCACACTGCGAGCTGTCCTGCCACAGGATAAGTCATT
GGCCCTGGCCTTTGAACTAATGATCGTGGGCCTTTTCGCCTATGTTCCAG
TGCATCTCAGCTACGACATTGTCACCCGTACAACCTGCGTTTACTGGGCA
CCCAACTACGAGCGCTGTCTGCTGCGAGAAACGCCGAAGCATGGCAACAT
CCTCGATATTCTCACAGCCTCATTGATCCTGGCCAGTGTGCTTTTCGACA
TACTCGTATACATATTCGCCAAAGGACTCAATCTTTACAACTGCAAGGTG
ACGGACAATAATTACACACCCTCTCTGTACGCACCAATTCCGCATGAGGA
TGCGACAACGTCGCCCAGTGCTCCACGTGGAGGAAGTCCAGTAACCACCA
CCACCACCTCATCGCCCATTCAACGCAGAGATGCCGCTCCAGAACCACGG
ACAGAGACAGCGGTATTCAGGAATCCCAGTTCGGTGACTACTTCATCGGG
TGGAGCACAGAGCATTGTGGAGCCCAGTGAGAGTGGGGTCACCTATGCAC
AAGTGGTCTTTCCACCAGACAGACGTAAGCCAGATGATGGTAGCACCAGT
CCCAAGCGGTTGGCCGTCCCAGCGAACGTACCATTGCATCTGCTCTCCGA
GTCGGACGTTCGCAGCCAGTTGGGCAACCTGAAGTCCTTCAATCCTCCCA
AACAGGAGGCGGACAGGGGTCTAGACACTGTAGACACCGACGATGTGGTG
GTCACCCAACCGCAGGTCCAAGCTGTGCTTCCGATAACCAGAGACCTTCA
TCCAAACCATCAACCGCAACCTGAGAGTCCGAGGCCACAGAGCCCAGAAA
CGGACTTCGCAAGCTTTCTAGACCAT
BO11815.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:05:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Oatp33Eb-RA | 2445 | CG6417-PA | 1..2442 | 17..2458 | 12210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:05:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Oatp33Eb-RA | 2743 | CG6417-RA | 179..2620 | 17..2458 | 12210 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:05:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12449832..12451131 | 430..1729 | 6500 | 100 | Plus |
2L | 23513712 | 2L | 12451194..12451924 | 1728..2458 | 3655 | 100 | Plus |
2L | 23513712 | 2L | 12448806..12448995 | 83..272 | 950 | 100 | Plus |
2L | 23513712 | 2L | 12449596..12449753 | 272..429 | 790 | 100 | Plus |
2L | 23513712 | 2L | 12448662..12448728 | 17..83 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:05:44 has no hits.
BO11815.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:59:09 Download gff for
BO11815.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oatp33Eb-RA | 1..2445 | 17..2462 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:30:33 Download gff for
BO11815.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oatp33Eb-RA | 177..2618 | 17..2460 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:53:09 Download gff for
BO11815.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oatp33Eb-RA | 179..2620 | 17..2460 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:59:09 Download gff for
BO11815.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oatp33Eb-RA | 177..2621 | 17..2462 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:10:47 Download gff for
BO11815.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oatp33Eb-RA | 179..2620 | 17..2460 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:10:47 Download gff for
BO11815.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12448662..12448728 | 17..83 | 100 | -> | Plus |
2L | 12448807..12448995 | 84..272 | 100 | -> | Plus |
2L | 12449597..12449753 | 273..429 | 100 | -> | Plus |
2L | 12449832..12451129 | 430..1727 | 100 | -> | Plus |
2L | 12451194..12451924 | 1728..2460 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:53:09 Download gff for
BO11815.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12448662..12448728 | 17..83 | 100 | -> | Plus |
arm_2L | 12448807..12448995 | 84..272 | 100 | -> | Plus |
arm_2L | 12449597..12449753 | 273..429 | 100 | -> | Plus |
arm_2L | 12449832..12451129 | 430..1727 | 100 | -> | Plus |
arm_2L | 12451194..12451924 | 1728..2460 | 99 | | Plus |
BO11815.pep Sequence
Translation from 16 to 2476
> BO11815.pep
MAHNTRNSDLSQIAVNANNIPDDSVDCGIKGLGWCRGPGCQKYARLRTFI
LVLAISGTLQGACESYFRVSAKQASFQFGWNPLIVDWLLVASGLFQAVFA
LAFAYWADVYHPIKWLVGTLMLQAVTCVVAVIPSIMNFADGNQAKDALLD
ANMCATSLAQFQRLTLTEAQSSSLTLAMLFVLQLALGMGGLAYYTLGVSY
IDDNSLSQDSPAVIGAALAARVFGQQAGSFLVLGVGLTHVGWWLGWVILA
PFIFVGAVLLGLFPKRLPKTVIHQAAQRIIEQSSMRRFGSQFSTYMDDSD
FWPSLKRLFNNRLLMFNLLSIMCVQSAVVNYGLQEESYLQSRFFLPYNEQ
DGLAAEWRSAFVSYFLKPPVMALGMLISGLVISKAKLSARKITGINIALS
IHLVAIFIGLIFVQCDVGAIAGVEGGKLKQPYCSSQCLCTPTAFMPVCPE
NSSVTYFSPCYAGCTKKTTINSFQLFEGCSCSGDQSLNSTGQMRATAGAC
SSDNCQSAIIIFQIMSISVAFLMGVGAIGKTLITLRAVLPQDKSLALAFE
LMIVGLFAYVPVHLSYDIVTRTTCVYWAPNYERCLLRETPKHGNILDILT
ASLILASVLFDILVYIFAKGLNLYNCKVTDNNYTPSLYAPIPHEDATTSP
SAPRGGSPVTTTTTSSPIQRRDAAPEPRTETAVFRNPSSVTTSSGGAQSI
VEPSESGVTYAQVVFPPDRRKPDDGSTSPKRLAVPANVPLHLLSESDVRS
QLGNLKSFNPPKQEADRGLDTVDTDDVVVTQPQVQAVLPITRDLHPNHQP
QPESPRPQSPETDFASFLDH
BO11815.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:27:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Oatp33Eb-PA | 814 | CG6417-PA | 1..814 | 1..814 | 4214 | 100 | Plus |
Oatp58Db-PB | 680 | CG3382-PB | 36..652 | 31..625 | 511 | 25.1 | Plus |
Oatp58Dc-PC | 789 | CG3380-PC | 89..764 | 22..625 | 461 | 23.4 | Plus |
Oatp58Dc-PB | 789 | CG3380-PB | 89..764 | 22..625 | 461 | 23.4 | Plus |
Oatp58Dc-PA | 789 | CG3380-PA | 89..764 | 22..625 | 461 | 23.4 | Plus |