Clone BO11816 Report

Search the DGRC for BO11816

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:118
Well:16
Vector:pDNR-Dual
Associated Gene/Transcriptdysb-RA
Protein status:BO11816.pep: validated full length
Sequenced Size:898

Clone Sequence Records

BO11816.3prime Sequence

770 bp (769 high quality bases) assembled on 2006-04-19

> BO11816.3prime
ATGGTCTAGAAAGCTTGCGCCATTTAGAAATTGTTCCAGAGCATCCTTTG
TCTCCACTTCGTTGGCTTCAAGGACGACTTCCTCCAGAGCCAACTTGTTG
CTGGTGGTTTGAATTTTTGTCAGCTGGCCGCGCTGTTTGTACTCCTCCAT
ATCCTCCCGGAAGGCGTCGTCGAAGACAGCCTGTCGTTCCCTCTGCAGCT
TCAGGAGGGTCTGCTCCTGATCCTTGATTTTGGATTGGTGTTTCTGGGCT
ATTTGCTGGCGATACTGCTCCAGTTCGTTCAGTTTCTTTTGCTTGTGCCG
GGAGAGCTGAAACTGCTGCTCAAGGATGAACTCTTGGAGCTCACACTCCT
CGCGCAGATCCTCCAGCTTCTCGAGCTCAATCTCCAACTGCTTACCCATT
TCCTCCAGGGAATTAAGAACCTGTGAGCTGTTTTGCAGTTGGGCTATCAA
CGTGGGAATTCCCGCCAGACTACTGTTCAGCTCACTCATGATCCTGTGCT
GATGGCTGGCCTGGTCTTGGATGCCGGAGATTTGGTTAGCAATCTGCGCA
GCCTTCTCCGCGTTCTTTTCGTTGGCGCCATGAATCTGCTGCCAATCATC
CTCGTATTTGGCAAGCAAACTGCAACCAGCTGCCACATTTAGGTGACTGG
GCACTCCATCGGTTAGCTGGAAGGGAGCACTAAGGGAGAGGCTACTGCTC
CTGCTGGACGACAGACTTTCGTTAAGGCCCAGTGGCGAAATGGGGGTCGT
AATCCCACTGGCTTGGCTAC

BO11816.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:31:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG6856-PA 867 CG6856-RA 113..864 770..19 3760 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:23:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dysb-RB 1117 CG6856-RB 222..973 770..19 3760 100 Minus
Dysb-RA 1391 CG6856-RA 222..973 770..19 3760 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:23:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18867992..18868645 770..117 3270 100 Minus
3L 28110227 3L 18868704..18868801 116..19 490 100 Minus
Blast to na_te.dros performed 2015-02-10 20:23:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2758..2868 296..186 132 60.2 Minus

BO11816.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:17:35 Download gff for BO11816.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6856-PA 113..867 15..770 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:45:41 Download gff for BO11816.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6856-PA 113..867 15..770 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 20:39:14 Download gff for BO11816.3prime
Subject Subject Range Query Range Percent Splice Strand
dysb-RA 222..978 12..770 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:20:58 Download gff for BO11816.3prime
Subject Subject Range Query Range Percent Splice Strand
Dysb-RA 222..978 12..770 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:20:58 Download gff for BO11816.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 18867992..18868645 117..770 100 -> Minus
3L 18868704..18868806 12..116 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 20:39:14 Download gff for BO11816.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18861804..18861906 12..116 97   Minus
arm_3L 18861092..18861745 117..770 100 -> Minus

BO11816.5prime Sequence

862 bp (828 high quality bases) assembled on 2006-04-19

> BO11816.5prime
GAAGTTATCAGTCGACATGTTCGGGAACCTGAAAAAGAAGCTTAGCAGTG
CGATCCAGGAGGGCCTGGTGATCTCGGAGAATCTGCAACAGCAATATCGC
CAGCGTGTCAGTTCCGGAAACTCGGGGAGTAGCCAAGCCAGTGGGATTAC
GACCCCCATTTCGCCACTGGGCCTTAACGAAAGTCTGTCGTCCAGCAGGA
GCAGTAGCCTCTCCCTTAGTGCTCCCTTCCAGCTAACCGATGGAGTGCCC
AGTCACCTAAATGTGGCAGCTGGTTGCAGTTTGCTTGCCAAATACGAGGA
TGATTGGCAGCAGATTCATGGCGCCAACGAAAAGAACGCGGAGAAGGCTG
CGCAGATTGCTAACCAAATCTCCGGCATCCAAGACCAGGCCAGCCATCAG
CACAGGATCATGAGTGAGCTGAACAGTAGTCTGGCGGGAATTCCCACGTT
GATAGCCCAACTGCAAAACAGCTCACAGGTTCTTAATTCCCTGGAGGAAA
TGGGTAAGCAGTTGGAGATTGAGCTCGAGAAGCTGGAGGATCTGCGCGAG
GAGTGTGAGCTCCAAGAGTTCATCCTTGAGCAGCAGTTTCAGCTCTCCCG
GCACAAGCAAAAGAAACTGAACGAACTGGAGCAGTATCGCCAGCAAATAG
CCCAGAAACACCAATCCAAAATCAAGGATCAGGAGCAGACCCTCCTGAAG
CTGCAGAGGGAACGACAGGCTGTCTTCGACGACGCCTTCCGGGAGGATAT
GGAGGAGTACAAACAGCGCGGCCAGCTGACAAAAATTCAAACCACCAGCA
ACAAGTTGGCTCTGGAGGAAGTCGTCCTTGAGGCCAACGAAGTGAAGACA
AAGGATGCTCTG

BO11816.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:31:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG6856-PA 867 CG6856-RA 1..846 17..862 4180 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:14:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dysb-RB 1117 CG6856-RB 110..955 17..862 4200 99.8 Plus
Dysb-RA 1391 CG6856-RA 110..955 17..862 4200 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:14:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18867880..18868645 17..782 3830 100 Plus
3L 28110227 3L 18868704..18868783 783..862 370 97.5 Plus
Blast to na_te.dros performed 2015-02-12 05:14:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2758..2868 603..713 132 60.2 Plus

BO11816.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:17:36 Download gff for BO11816.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6856-PA 1..846 17..862 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:45:43 Download gff for BO11816.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6856-PA 1..846 17..862 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:52:01 Download gff for BO11816.5prime
Subject Subject Range Query Range Percent Splice Strand
dysb-RA 103..955 8..862 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:57:00 Download gff for BO11816.5prime
Subject Subject Range Query Range Percent Splice Strand
Dysb-RA 103..955 8..862 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:57:00 Download gff for BO11816.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 18867873..18868645 8..782 99 -> Plus
3L 18868704..18868783 783..862 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:52:01 Download gff for BO11816.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18860973..18861745 8..782 99 -> Plus
arm_3L 18861804..18861883 783..862 97   Plus

BO11816.complete Sequence

898 bp assembled on 2006-10-11

GenBank Submission: FJ632207

> BO11816.complete
GAAGTTATCAGTCGACATGTTCGGGAACCTGAAAAAGAAGCTTAGCAGTG
CGATCCAGGAGGGCCTGGTGATCTCGGAGAATCTGCAACAGCAATATCGC
CAGCGTGTCAGTTCCGGAAACTCGGGGAGTAGCCAAGCCAGTGGGATTAC
GACCCCCATTTCGCCACTGGGCCTTAACGAAAGTCTGTCGTCCAGCAGGA
GCAGTAGCCTCTCCCTTAGTGCTCCCTTCCAGCTAACCGATGGAGTGCCC
AGTCACCTAAATGTGGCAGCTGGTTGCAGTTTGCTTGCCAAATACGAGGA
TGATTGGCAGCAGATTCATGGCGCCAACGAAAAGAACGCGGAGAAGGCTG
CGCAGATTGCTAACCAAATCTCCGGCATCCAAGACCAGGCCAGCCATCAG
CACAGGATCATGAGTGAGCTGAACAGTAGTCTGGCGGGAATTCCCACGTT
GATAGCCCAACTGCAAAACAGCTCACAGGTTCTTAATTCCCTGGAGGAAA
TGGGTAAGCAGTTGGAGATTGAGCTCGAGAAGCTGGAGGATCTGCGCGAG
GAGTGTGAGCTCCAAGAGTTCATCCTTGAGCAGCAGTTTCAGCTCTCCCG
GCACAAGCAAAAGAAACTGAACGAACTGGAGCAGTATCGCCAGCAAATAG
CCCAGAAACACCAATCCAAAATCAAGGATCAGGAGCAGACCCTCCTGAAG
CTGCAGAGGGAACGACAGGCTGTCTTCGACGACGCCTTCCGGGAGGATAT
GGAGGAGTACAAACAGCGCGGCCAGCTGACAAAAATTCAAACCACCAGCA
ACAAGTTGGCTCTGGAGGAAGTCGTCCTTGAAGCCAACGAAGTGGAGACA
AAGGATGCTCTGGAACAATTTCTAAATGGCGCAAGCTTTCTAGACCAT

BO11816.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:31:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dysb-RB 867 CG6856-PB 1..864 17..880 4320 100 Plus
Dysb-RA 867 CG6856-PA 1..864 17..880 4320 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:31:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dysb-RB 1117 CG6856-RB 110..973 17..880 4320 100 Plus
Dysb-RA 1391 CG6856-RA 110..973 17..880 4320 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:31:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18867880..18868645 17..782 3830 100 Plus
3L 28110227 3L 18868704..18868801 783..880 490 100 Plus
Blast to na_te.dros performed 2014-11-27 20:31:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2758..2868 603..713 132 60.2 Plus

BO11816.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:49:28 Download gff for BO11816.complete
Subject Subject Range Query Range Percent Splice Strand
CG6856-RA 1..867 17..884 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:04:29 Download gff for BO11816.complete
Subject Subject Range Query Range Percent Splice Strand
CG6856-RA 97..972 8..887 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:10:55 Download gff for BO11816.complete
Subject Subject Range Query Range Percent Splice Strand
dysb-RA 115..973 22..882 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:49:28 Download gff for BO11816.complete
Subject Subject Range Query Range Percent Splice Strand
CG6856-RA 97..972 8..887 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:22:54 Download gff for BO11816.complete
Subject Subject Range Query Range Percent Splice Strand
Dysb-RA 115..973 22..882 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:22:54 Download gff for BO11816.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18868704..18868801 783..882 98   Plus
3L 18867885..18868645 22..782 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:10:55 Download gff for BO11816.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18860985..18861745 22..782 100 -> Plus
arm_3L 18861804..18861901 783..882 98   Plus

BO11816.pep Sequence

Translation from 16 to 898

> BO11816.pep
MFGNLKKKLSSAIQEGLVISENLQQQYRQRVSSGNSGSSQASGITTPISP
LGLNESLSSSRSSSLSLSAPFQLTDGVPSHLNVAAGCSLLAKYEDDWQQI
HGANEKNAEKAAQIANQISGIQDQASHQHRIMSELNSSLAGIPTLIAQLQ
NSSQVLNSLEEMGKQLEIELEKLEDLREECELQEFILEQQFQLSRHKQKK
LNELEQYRQQIAQKHQSKIKDQEQTLLKLQRERQAVFDDAFREDMEEYKQ
RGQLTKIQTTSNKLALEEVVLEANEVETKDALEQFLNGASFLDH

BO11816.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:31:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dysb-PB 288 CG6856-PB 1..288 1..288 1422 100 Plus
Dysb-PA 288 CG6856-PA 1..288 1..288 1422 100 Plus