Clone Sequence Records
BO11816.3prime Sequence
770 bp (769 high quality bases) assembled on 2006-04-19
> BO11816.3prime
ATGGTCTAGAAAGCTTGCGCCATTTAGAAATTGTTCCAGAGCATCCTTTG
TCTCCACTTCGTTGGCTTCAAGGACGACTTCCTCCAGAGCCAACTTGTTG
CTGGTGGTTTGAATTTTTGTCAGCTGGCCGCGCTGTTTGTACTCCTCCAT
ATCCTCCCGGAAGGCGTCGTCGAAGACAGCCTGTCGTTCCCTCTGCAGCT
TCAGGAGGGTCTGCTCCTGATCCTTGATTTTGGATTGGTGTTTCTGGGCT
ATTTGCTGGCGATACTGCTCCAGTTCGTTCAGTTTCTTTTGCTTGTGCCG
GGAGAGCTGAAACTGCTGCTCAAGGATGAACTCTTGGAGCTCACACTCCT
CGCGCAGATCCTCCAGCTTCTCGAGCTCAATCTCCAACTGCTTACCCATT
TCCTCCAGGGAATTAAGAACCTGTGAGCTGTTTTGCAGTTGGGCTATCAA
CGTGGGAATTCCCGCCAGACTACTGTTCAGCTCACTCATGATCCTGTGCT
GATGGCTGGCCTGGTCTTGGATGCCGGAGATTTGGTTAGCAATCTGCGCA
GCCTTCTCCGCGTTCTTTTCGTTGGCGCCATGAATCTGCTGCCAATCATC
CTCGTATTTGGCAAGCAAACTGCAACCAGCTGCCACATTTAGGTGACTGG
GCACTCCATCGGTTAGCTGGAAGGGAGCACTAAGGGAGAGGCTACTGCTC
CTGCTGGACGACAGACTTTCGTTAAGGCCCAGTGGCGAAATGGGGGTCGT
AATCCCACTGGCTTGGCTAC
BO11816.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:31:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6856-PA | 867 | CG6856-RA | 113..864 | 770..19 | 3760 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:23:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dysb-RB | 1117 | CG6856-RB | 222..973 | 770..19 | 3760 | 100 | Minus |
Dysb-RA | 1391 | CG6856-RA | 222..973 | 770..19 | 3760 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:23:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18867992..18868645 | 770..117 | 3270 | 100 | Minus |
3L | 28110227 | 3L | 18868704..18868801 | 116..19 | 490 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 20:23:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2758..2868 | 296..186 | 132 | 60.2 | Minus |
BO11816.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:17:35 Download gff for
BO11816.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6856-PA | 113..867 | 15..770 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:45:41 Download gff for
BO11816.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6856-PA | 113..867 | 15..770 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 20:39:14 Download gff for
BO11816.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dysb-RA | 222..978 | 12..770 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:20:58 Download gff for
BO11816.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dysb-RA | 222..978 | 12..770 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:20:58 Download gff for
BO11816.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18867992..18868645 | 117..770 | 100 | -> | Minus |
3L | 18868704..18868806 | 12..116 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 20:39:14 Download gff for
BO11816.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18861804..18861906 | 12..116 | 97 | | Minus |
arm_3L | 18861092..18861745 | 117..770 | 100 | -> | Minus |
BO11816.5prime Sequence
862 bp (828 high quality bases) assembled on 2006-04-19
> BO11816.5prime
GAAGTTATCAGTCGACATGTTCGGGAACCTGAAAAAGAAGCTTAGCAGTG
CGATCCAGGAGGGCCTGGTGATCTCGGAGAATCTGCAACAGCAATATCGC
CAGCGTGTCAGTTCCGGAAACTCGGGGAGTAGCCAAGCCAGTGGGATTAC
GACCCCCATTTCGCCACTGGGCCTTAACGAAAGTCTGTCGTCCAGCAGGA
GCAGTAGCCTCTCCCTTAGTGCTCCCTTCCAGCTAACCGATGGAGTGCCC
AGTCACCTAAATGTGGCAGCTGGTTGCAGTTTGCTTGCCAAATACGAGGA
TGATTGGCAGCAGATTCATGGCGCCAACGAAAAGAACGCGGAGAAGGCTG
CGCAGATTGCTAACCAAATCTCCGGCATCCAAGACCAGGCCAGCCATCAG
CACAGGATCATGAGTGAGCTGAACAGTAGTCTGGCGGGAATTCCCACGTT
GATAGCCCAACTGCAAAACAGCTCACAGGTTCTTAATTCCCTGGAGGAAA
TGGGTAAGCAGTTGGAGATTGAGCTCGAGAAGCTGGAGGATCTGCGCGAG
GAGTGTGAGCTCCAAGAGTTCATCCTTGAGCAGCAGTTTCAGCTCTCCCG
GCACAAGCAAAAGAAACTGAACGAACTGGAGCAGTATCGCCAGCAAATAG
CCCAGAAACACCAATCCAAAATCAAGGATCAGGAGCAGACCCTCCTGAAG
CTGCAGAGGGAACGACAGGCTGTCTTCGACGACGCCTTCCGGGAGGATAT
GGAGGAGTACAAACAGCGCGGCCAGCTGACAAAAATTCAAACCACCAGCA
ACAAGTTGGCTCTGGAGGAAGTCGTCCTTGAGGCCAACGAAGTGAAGACA
AAGGATGCTCTG
BO11816.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:31:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6856-PA | 867 | CG6856-RA | 1..846 | 17..862 | 4180 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:14:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dysb-RB | 1117 | CG6856-RB | 110..955 | 17..862 | 4200 | 99.8 | Plus |
Dysb-RA | 1391 | CG6856-RA | 110..955 | 17..862 | 4200 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:14:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18867880..18868645 | 17..782 | 3830 | 100 | Plus |
3L | 28110227 | 3L | 18868704..18868783 | 783..862 | 370 | 97.5 | Plus |
Blast to na_te.dros performed 2015-02-12 05:14:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2758..2868 | 603..713 | 132 | 60.2 | Plus |
BO11816.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:17:36 Download gff for
BO11816.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6856-PA | 1..846 | 17..862 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:45:43 Download gff for
BO11816.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6856-PA | 1..846 | 17..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:52:01 Download gff for
BO11816.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dysb-RA | 103..955 | 8..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:57:00 Download gff for
BO11816.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dysb-RA | 103..955 | 8..862 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:57:00 Download gff for
BO11816.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18867873..18868645 | 8..782 | 99 | -> | Plus |
3L | 18868704..18868783 | 783..862 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:52:01 Download gff for
BO11816.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18860973..18861745 | 8..782 | 99 | -> | Plus |
arm_3L | 18861804..18861883 | 783..862 | 97 | | Plus |
BO11816.complete Sequence
898 bp assembled on 2006-10-11
GenBank Submission: FJ632207
> BO11816.complete
GAAGTTATCAGTCGACATGTTCGGGAACCTGAAAAAGAAGCTTAGCAGTG
CGATCCAGGAGGGCCTGGTGATCTCGGAGAATCTGCAACAGCAATATCGC
CAGCGTGTCAGTTCCGGAAACTCGGGGAGTAGCCAAGCCAGTGGGATTAC
GACCCCCATTTCGCCACTGGGCCTTAACGAAAGTCTGTCGTCCAGCAGGA
GCAGTAGCCTCTCCCTTAGTGCTCCCTTCCAGCTAACCGATGGAGTGCCC
AGTCACCTAAATGTGGCAGCTGGTTGCAGTTTGCTTGCCAAATACGAGGA
TGATTGGCAGCAGATTCATGGCGCCAACGAAAAGAACGCGGAGAAGGCTG
CGCAGATTGCTAACCAAATCTCCGGCATCCAAGACCAGGCCAGCCATCAG
CACAGGATCATGAGTGAGCTGAACAGTAGTCTGGCGGGAATTCCCACGTT
GATAGCCCAACTGCAAAACAGCTCACAGGTTCTTAATTCCCTGGAGGAAA
TGGGTAAGCAGTTGGAGATTGAGCTCGAGAAGCTGGAGGATCTGCGCGAG
GAGTGTGAGCTCCAAGAGTTCATCCTTGAGCAGCAGTTTCAGCTCTCCCG
GCACAAGCAAAAGAAACTGAACGAACTGGAGCAGTATCGCCAGCAAATAG
CCCAGAAACACCAATCCAAAATCAAGGATCAGGAGCAGACCCTCCTGAAG
CTGCAGAGGGAACGACAGGCTGTCTTCGACGACGCCTTCCGGGAGGATAT
GGAGGAGTACAAACAGCGCGGCCAGCTGACAAAAATTCAAACCACCAGCA
ACAAGTTGGCTCTGGAGGAAGTCGTCCTTGAAGCCAACGAAGTGGAGACA
AAGGATGCTCTGGAACAATTTCTAAATGGCGCAAGCTTTCTAGACCAT
BO11816.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:31:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dysb-RB | 867 | CG6856-PB | 1..864 | 17..880 | 4320 | 100 | Plus |
Dysb-RA | 867 | CG6856-PA | 1..864 | 17..880 | 4320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:31:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dysb-RB | 1117 | CG6856-RB | 110..973 | 17..880 | 4320 | 100 | Plus |
Dysb-RA | 1391 | CG6856-RA | 110..973 | 17..880 | 4320 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:31:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18867880..18868645 | 17..782 | 3830 | 100 | Plus |
3L | 28110227 | 3L | 18868704..18868801 | 783..880 | 490 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 20:31:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2758..2868 | 603..713 | 132 | 60.2 | Plus |
BO11816.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:49:28 Download gff for
BO11816.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6856-RA | 1..867 | 17..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:04:29 Download gff for
BO11816.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6856-RA | 97..972 | 8..887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:10:55 Download gff for
BO11816.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dysb-RA | 115..973 | 22..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:49:28 Download gff for
BO11816.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6856-RA | 97..972 | 8..887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:22:54 Download gff for
BO11816.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dysb-RA | 115..973 | 22..882 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:22:54 Download gff for
BO11816.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18868704..18868801 | 783..882 | 98 | | Plus |
3L | 18867885..18868645 | 22..782 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:10:55 Download gff for
BO11816.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18860985..18861745 | 22..782 | 100 | -> | Plus |
arm_3L | 18861804..18861901 | 783..882 | 98 | | Plus |
BO11816.pep Sequence
Translation from 16 to 898
> BO11816.pep
MFGNLKKKLSSAIQEGLVISENLQQQYRQRVSSGNSGSSQASGITTPISP
LGLNESLSSSRSSSLSLSAPFQLTDGVPSHLNVAAGCSLLAKYEDDWQQI
HGANEKNAEKAAQIANQISGIQDQASHQHRIMSELNSSLAGIPTLIAQLQ
NSSQVLNSLEEMGKQLEIELEKLEDLREECELQEFILEQQFQLSRHKQKK
LNELEQYRQQIAQKHQSKIKDQEQTLLKLQRERQAVFDDAFREDMEEYKQ
RGQLTKIQTTSNKLALEEVVLEANEVETKDALEQFLNGASFLDH
BO11816.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:31:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dysb-PB | 288 | CG6856-PB | 1..288 | 1..288 | 1422 | 100 | Plus |
Dysb-PA | 288 | CG6856-PA | 1..288 | 1..288 | 1422 | 100 | Plus |