Clone BO11822 Report

Search the DGRC for BO11822

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:118
Well:22
Vector:pDNR-Dual
Associated Gene/TranscriptPhk-3-RA
Protein status:BO11822.pep: validated full length
Sequenced Size:397

Clone Sequence Records

BO11822.3prime Sequence

395 bp (394 high quality bases) assembled on 2006-04-19

> BO11822.3prime
ATGGTCTAGAAAGCTTGCGTGTCCCTCGTGCTTTGCTCTGTAGATGCCTT
GGGGATCGTACTTGTTCAGGAGGAGCTTCCATTCGCCGGCTTTGTTGGCG
CGAAGGTAGTTGATTACCTTTTGTGAGTTTTTGCGTTGGACTTCCGTGCA
CTTTGAGCAGTCGGAATGAAGGGCGTCGGGTAAAAGGCGCTTAAGTTCAC
GACCCTCTGCTGTGCATGGGCCCTTGTCCATCAGGCACTTGAGATAATTA
CCCAACACTCGGTTGTTGCCCAGAACTTCATCCACGTTGACACTGTCGTA
CTTGTTGGTGTAGGTTTTTTCAGGAGCAGCTGCCGCAAGACCGACACAAA
CACAGAACACTAGAGCTAGCGAGGCTTTCATGTCGACTGATAACT

BO11822.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:31:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG9358-PA 366 Phk-3-RA 1..363 381..19 1815 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 20:16:31
Subject Length Description Subject Range Query Range Score Percent Strand
Phk-3-RC 718 CG9358-RC 257..619 381..19 1815 100 Minus
Phk-3-RB 635 CG9358-RB 174..536 381..19 1815 100 Minus
Phk-3-RA 546 CG9358-RA 85..447 381..19 1815 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 20:16:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24970942..24971304 19..381 1815 100 Plus
Blast to na_te.dros performed on 2015-01-31 20:16:28 has no hits.

BO11822.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:17:45 Download gff for BO11822.3prime
Subject Subject Range Query Range Percent Splice Strand
Phk-3-PA 1..366 16..381 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:45:55 Download gff for BO11822.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9358-PA 1..366 16..381 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 11:38:14 Download gff for BO11822.3prime
Subject Subject Range Query Range Percent Splice Strand
Phk-3-RA 85..457 10..381 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 22:51:02 Download gff for BO11822.3prime
Subject Subject Range Query Range Percent Splice Strand
Phk-3-RA 85..457 10..381 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 22:51:02 Download gff for BO11822.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 24970932..24971304 10..381 98 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 11:38:14 Download gff for BO11822.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20858455..20858827 10..381 98 <- Plus

BO11822.5prime Sequence

395 bp (394 high quality bases) assembled on 2006-04-19

> BO11822.5prime
GAAGTTATCAGTCGACATGAAAGCCTCGCTAGCTCTAGTGTTCTGTGTTT
GTGTCGGTCTTGCGGCAGCTGCTCCTGAAAAAACCTACACCAACAAGTAC
GACAGTGTCAACGTGGATGAAGTTCTGGGCAACAACCGAGTGTTGGGTAA
TTATCTCAAGTGCCTGATGGACAAGGGCCCATGCACAGCAGAGGGTCGTG
AACTTAAGCGCCTTTTACCCGACGCCCTTCATTCCGACTGCTCAAAGTGC
ACGGAAGTCCAACGCAAAAACTCACAAAAGGTAATCAACTACCTTCGCGC
CAACAAAGCCGGCGAATGGAAGCTCCTCCTGAACAAGTACGATCCCCAAG
GCATCTACAGAGCAAAGCACGAGGGACACGCAAGCTTTCTAGACC

BO11822.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:31:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG9358-PA 366 Phk-3-RA 1..363 17..379 1815 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:22:38
Subject Length Description Subject Range Query Range Score Percent Strand
Phk-3-RC 718 CG9358-RC 257..619 17..379 1815 100 Plus
Phk-3-RB 635 CG9358-RB 174..536 17..379 1815 100 Plus
Phk-3-RA 546 CG9358-RA 85..447 17..379 1815 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:22:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24970942..24971304 379..17 1815 100 Minus
Blast to na_te.dros performed on 2015-02-11 15:22:37 has no hits.

BO11822.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:17:47 Download gff for BO11822.5prime
Subject Subject Range Query Range Percent Splice Strand
Phk-3-PA 1..366 17..382 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:45:57 Download gff for BO11822.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9358-PA 1..366 17..382 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:23:08 Download gff for BO11822.5prime
Subject Subject Range Query Range Percent Splice Strand
Phk-3-RA 85..457 17..388 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:18:22 Download gff for BO11822.5prime
Subject Subject Range Query Range Percent Splice Strand
Phk-3-RA 85..457 17..388 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:18:22 Download gff for BO11822.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24970932..24971304 17..388 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:23:08 Download gff for BO11822.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20858455..20858827 17..388 98 <- Minus

BO11822.complete Sequence

397 bp assembled on 2006-10-11

GenBank Submission: FJ632208

> BO11822.complete
GAAGTTATCAGTCGACATGAAAGCCTCGCTAGCTCTAGTGTTCTGTGTTT
GTGTCGGTCTTGCGGCAGCTGCTCCTGAAAAAACCTACACCAACAAGTAC
GACAGTGTCAACGTGGATGAAGTTCTGGGCAACAACCGAGTGTTGGGTAA
TTATCTCAAGTGCCTGATGGACAAGGGCCCATGCACAGCAGAGGGTCGTG
AACTTAAGCGCCTTTTACCCGACGCCCTTCATTCCGACTGCTCAAAGTGC
ACGGAAGTCCAACGCAAAAACTCACAAAAGGTAATCAACTACCTTCGCGC
CAACAAAGCCGGCGAATGGAAGCTCCTCCTGAACAAGTACGATCCCCAAG
GCATCTACAGAGCAAAGCACGAGGGACACGCAAGCTTTCTAGACCAT

BO11822.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:54:51
Subject Length Description Subject Range Query Range Score Percent Strand
Phk-3-RC 366 CG9358-PC 1..363 17..379 1815 100 Plus
Phk-3-RB 366 CG9358-PB 1..363 17..379 1815 100 Plus
Phk-3-RA 366 CG9358-PA 1..363 17..379 1815 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:54:52
Subject Length Description Subject Range Query Range Score Percent Strand
Phk-3-RC 718 CG9358-RC 257..619 17..379 1815 100 Plus
Phk-3-RB 635 CG9358-RB 174..536 17..379 1815 100 Plus
Phk-3-RA 546 CG9358-RA 85..447 17..379 1815 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:54:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24970942..24971304 379..17 1815 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:54:50 has no hits.

BO11822.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:49:29 Download gff for BO11822.complete
Subject Subject Range Query Range Percent Splice Strand
Phk-3-RA 1..366 17..382 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:03:23 Download gff for BO11822.complete
Subject Subject Range Query Range Percent Splice Strand
Phk-3-RA 82..454 17..388 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:28:25 Download gff for BO11822.complete
Subject Subject Range Query Range Percent Splice Strand
Phk-3-RA 85..447 17..381 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:49:29 Download gff for BO11822.complete
Subject Subject Range Query Range Percent Splice Strand
Phk-3-RA 82..454 17..388 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:58:57 Download gff for BO11822.complete
Subject Subject Range Query Range Percent Splice Strand
Phk-3-RA 85..447 17..381 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:58:57 Download gff for BO11822.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24970939..24971304 17..381 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:28:25 Download gff for BO11822.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20858462..20858827 17..381 99   Minus

BO11822.pep Sequence

Translation from 16 to 397

> BO11822.pep
MKASLALVFCVCVGLAAAAPEKTYTNKYDSVNVDEVLGNNRVLGNYLKCL
MDKGPCTAEGRELKRLLPDALHSDCSKCTEVQRKNSQKVINYLRANKAGE
WKLLLNKYDPQGIYRAKHEGHASFLDH

BO11822.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:31:20
Subject Length Description Subject Range Query Range Score Percent Strand
Phk-3-PC 121 CG9358-PC 1..121 1..121 646 100 Plus
Phk-3-PB 121 CG9358-PB 1..121 1..121 646 100 Plus
Phk-3-PA 121 CG9358-PA 1..121 1..121 646 100 Plus
PebIII-PC 126 CG11390-PC 1..119 1..122 336 54.1 Plus
PebIII-PB 126 CG11390-PB 1..119 1..122 336 54.1 Plus