Clone Sequence Records
BO11824.3prime Sequence
803 bp (761 high quality bases) assembled on 2006-04-19
> BO11824.3prime
ATGGTCTAGAAAGCTTGCTACATGTATGGTGCTGTTTCGCTCATGGTAAA
TGGTGCTGAGCGAGGATCGGATGAAGGCATCGCTCCGTTCCACGAAGCCA
TCCAAATGGGTCCACAGGAACCAGAAGCTCAGGGAGAAAAACAGCACTTT
GCTGACCCAGTCGAGGATATACAGCCGTCGCAGGACCTTCCTGGCCTGCG
GCAGAGTGTCCTCGCTCTCGCCCAGTATATAGGTGCGCATGCCCACAATG
TAGTTACTGATGTATGTCTCCCAATTGACCTGACCCACCGACGTGTCGAA
GAGGTCCTGATCCAGGAGGCTCAGCTGACTGCTCATCTCCTGGAAGCGCT
CGTTTCGGAACTCCCACCTTTTCGTTGTGTAGTACTGCAGCAGCTTCAGA
CCCATGGACACTTTGCGTTGGACATTGAGTAAGAATGGCTTTTGGCCAAA
GACGAGCAGCCAAAAGTCTATGAAGTATGCGGGCAGATAGTGGAAGAAGA
TGACGCAGAAAAGGTGGTGGTAGTAGTTCTTTTTGATGGATCCACCCGGA
TACCAGAGCGCAAAGCTGAGCGGCGTTTCGTAGAAGAATCGACGACCCGT
CTCGATGCTGTCGCCCCAGGACATCAGCGCCTTGCTGGAGATGCACAGAT
TGCAGAACTCAACACCCGTCTGCTTGTTACCCTTCTCCTGGCTGGCCTTT
CCGCGCTGATAGCCGCACAGGATCATGCCGTTAATGGCCTTGTCTACGGG
TATCACCGTGGAGGCGTAGTCCGGATTGCAGTGCATCGATCGGATGACTC
CGC
BO11824.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:31:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12268-PA | 1596 | CG12268-RA | 809..1593 | 803..19 | 3900 | 99.8 | Minus |
| CG12268-PB | 1596 | CG12268-RB | 809..1593 | 803..19 | 3900 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-07 01:51:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12268-RC | 1864 | CG12268-RC | 1016..1800 | 803..19 | 3910 | 99.9 | Minus |
| CG12268-RB | 1757 | CG12268-RB | 909..1693 | 803..19 | 3910 | 99.9 | Minus |
| CG12268-RA | 1775 | CG12268-RA | 927..1711 | 803..19 | 3910 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-07 01:51:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23943692..23944106 | 19..433 | 2075 | 100 | Plus |
| 3R | 32079331 | 3R | 23944165..23944534 | 434..803 | 1835 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-07 01:51:27 has no hits.
BO11824.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:17:50 Download gff for
BO11824.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12268-PA | 809..1596 | 15..803 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:46:01 Download gff for
BO11824.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12268-PB | 809..1596 | 15..803 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 11:22:57 Download gff for
BO11824.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12268-RA | 927..1722 | 8..803 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-07 06:01:20 Download gff for
BO11824.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12268-RA | 927..1722 | 8..803 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-07 06:01:20 Download gff for
BO11824.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23943681..23944106 | 8..433 | 99 | <- | Plus |
| 3R | 23944165..23944534 | 434..803 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 11:22:57 Download gff for
BO11824.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19769403..19769828 | 8..433 | 99 | <- | Plus |
| arm_3R | 19769887..19770256 | 434..803 | 99 | | Plus |
BO11824.5prime Sequence
866 bp (750 high quality bases) assembled on 2006-04-19
> BO11824.5prime
GAAGTTATCAGTCGACATGGACATACTGAGGAGCGATGCCGATTGCGGCG
AGTCCGATATTGCCAAGTTCTATGCAAACAAAACCATCCTTATTACGGGT
GCCACCGGATTTATGGGCAAGGTTCTGGTGGAGAAACTACTGCGTAGCTG
TGCCGACCTGAACGTCATATATCTATTGATACGCACCAAAAAAGGGGTCG
ATCCCAGTGTGCGCAAGGAGCAGTACTTCAAGTGTGTGATCTTTGGCAAG
CTGCTGGAGAAGAATCCCGGCATCGTGGACAAGGTGCGCGTGGTAAAGGG
CGATCTGCTGGAGCCGGACCTTGGCCTGAGCGCCAATGACACCAACACAC
TCGCCTCCAACGTCGAGGTGGTCTTCCACTGTGCGGCCAATGTGCGCTTC
GACCAGCCGCTGCGTCCCATGGTCATGATGAACGTGGTGGGCACCCTGAA
GGTCCTCCGCCTCGCTGAGAAGATGAGCCAGCTGCAGGCTCTGGTCCACG
TGTCCACCTCATACTGCCAGTGCAACGAGAGCGTTCTGGAGGAGCGAGCC
TACCCGGCTCCACAGAACCCCTTCTCCATCATCGAAATGGTGGAGACGAT
GGACGACGAAGCTCTGGCGGAGATTACACCCAAATTACTAAACGGCTTGC
CAAACACGTACGCTTACAGCAAGGCGCTGTCGGAAGATTTAATTTGCAGA
TACAACAATAAGCTGCCCATAATCATCACAAGGCCCTCGATCGTGACGGC
CGCCATTCACGAGCCATTGCCCGGCTGGATCGAGGGCGTCAATGGACCCA
CCGGCCTAATGATCCGCGCCGCCCGCGGAGTCATCCGATCGATGCACTGC
AATCCGGACTACGCCT
BO11824.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:31:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12268-PA | 1596 | CG12268-RA | 1..850 | 17..866 | 4225 | 99.8 | Plus |
| CG12268-PB | 1596 | CG12268-RB | 1..850 | 17..866 | 4225 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:19:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12268-RC | 1864 | CG12268-RC | 207..1057 | 16..866 | 4240 | 99.9 | Plus |
| CG12268-RB | 1757 | CG12268-RB | 100..950 | 16..866 | 4240 | 99.9 | Plus |
| CG12268-RA | 1775 | CG12268-RA | 118..968 | 16..866 | 4240 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:19:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23945017..23945412 | 633..238 | 1980 | 100 | Minus |
| 3R | 32079331 | 3R | 23946609..23946831 | 238..16 | 1115 | 100 | Minus |
| 3R | 32079331 | 3R | 23944493..23944616 | 866..743 | 605 | 99.2 | Minus |
| 3R | 32079331 | 3R | 23944685..23944794 | 743..634 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:19:17 has no hits.
BO11824.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:17:51 Download gff for
BO11824.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12268-PA | 1..850 | 17..866 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:46:03 Download gff for
BO11824.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12268-PB | 1..850 | 17..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:21:25 Download gff for
BO11824.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12268-RA | 118..968 | 16..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:13:14 Download gff for
BO11824.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12268-RA | 118..968 | 16..866 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:13:14 Download gff for
BO11824.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23944493..23944615 | 744..866 | 99 | <- | Minus |
| 3R | 23944685..23944794 | 634..743 | 100 | <- | Minus |
| 3R | 23945017..23945411 | 239..633 | 100 | <- | Minus |
| 3R | 23946609..23946831 | 16..238 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:21:25 Download gff for
BO11824.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19770215..19770337 | 744..866 | 99 | <- | Minus |
| arm_3R | 19770407..19770516 | 634..743 | 100 | <- | Minus |
| arm_3R | 19770739..19771133 | 239..633 | 100 | <- | Minus |
| arm_3R | 19772331..19772553 | 16..238 | 100 | | Minus |
BO11824.complete Sequence
1627 bp assembled on 2007-10-17
GenBank Submission: FJ632209
> BO11824.complete
GAAGTTATCAGTCGACATGGACATACTGAGGAGCGATGCCGATTGCGGCG
AGTCCGATATTGCCAAGTTCTATGCAAACAAAACCATCCTTATTACGGGT
GCCACCGGATTTATGGGCAAGGTTCTGGTGGAGAAACTACTGCGTAGCTG
TGCCGACCTGAACGTCATATATCTATTGATACGCACCAAAAAAGGGGTCG
ATCCCAGTGTGCGCAAGGAGCAGTACTTCAAGTGTGTGATCTTTGGCAAG
CTGCTGGAGAAGAATCCCGGCATCGTGGACAAGGTGCGCGTGGTAAAGGG
CGATCTGCTGGAGCCGGACCTTGGCCTGAGCGCCAATGACACCAACACAC
TCGCCTCCAACGTCGAGGTGGTCTTCCACTGTGCGGCCAATGTGCGCTTC
GACCAGCCGCTGCGTCCCATGGTCATGATGAACGTGGTGGGCACCCTGAA
GGTCCTCCGCCTCGCTGAGAAGATGAGCCAGCTGCAGGCTCTGGTCCACG
TGTCCACCTCATACTGCCAGTGCAACGAGAGCGTTCTGGAGGAGCGAGCC
TACCCGGCTCCACAGAACCCCTTCTCCATCATCGAAATGGTGGAGACGAT
GGACGACGAAGCTCTGGCGGAGATTACACCCAAATTACTAAACGGCTTGC
CAAACACGTACGCTTACAGCAAGGCGCTGTCGGAAGATTTAATTTGCAGA
TACAACAATAAGCTGCCCATAATCATCACAAGGCCCTCGATCGTGACGGC
CGCCATTCACGAGCCATTGCCCGGCTGGATCGAGGGCGTCAATGGACCCA
CCGGCCTAATGATCGGCGCCGCCCGCGGAGTCATCCGATCGATGCACTGC
AATCCGGACTACGCCTCCACGGTGATACCCGTAGACAAGGCCATTAACGG
CATGATCCTGTGCGGCTATCAGCGCGGAAAGGCCAGCCAGGAGAAGGGTA
ACAAGCAGACGGGTGTTGAGTTCTGCAATCTGTGCATCTCCAGCAAGGCG
CTGATGTCCTGGGGCGACAGCATCGAGACGGGTCGTCGATTCTTCTACGA
AACGCCGCTCAGCTTTGCGCTCTGGTATCCGGGTGGATCCATCAAAAAGA
ACTACTACCACCACCTTTTCTGCGTCATCTTCTTCCACTATCTGCCCGCA
TACTTCATAGACTTTTGGCTGCTCGTCTTTGGCCAAAAGCCATTCTTACT
CAATGTCCAACGCAAAGTGTCCATGGGTCTGAAGCTGCTGCAGTACTACA
CAACGAAAAGGTGGGAGTTCCGAAACGAGCGCTTCCAGGAGATGAGCAGT
CAGCTGAGCCTCCTGGATCAGGACCTCTTCGACACGTCGGTGGGTCAGGT
CAATTGGGAGACATACATCAGTAACTACATTGTGGGCATGCGCACCTATA
TACTGGGCGAGAGCGAGGACACTCTGCCGCAGGCCAGGAAGGTCCTGCGA
CGGCTGTATATCCTCGACTGGGTCAGCAAAGTGCTGTTTTTCTCCCTGAG
CTTCTGGTTCCTGTGGACCCATTTGGATGGCTTCGTGGAACGGAGCGATG
CCTTCATCCGATCCTCGCTCAGCACCATTTACCATGAGCGAAACAGCACC
ATACATGTAGCAAGCTTTCTAGACCAT
BO11824.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:24:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12268-RC | 1596 | CG12268-PC | 1..1593 | 17..1609 | 7950 | 99.9 | Plus |
| CG12268-RB | 1596 | CG12268-PB | 1..1593 | 17..1609 | 7950 | 99.9 | Plus |
| CG12268-RA | 1596 | CG12268-PA | 1..1593 | 17..1609 | 7950 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:24:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12268-RC | 1864 | CG12268-RC | 207..1800 | 16..1609 | 7955 | 99.9 | Plus |
| CG12268-RB | 1757 | CG12268-RB | 100..1693 | 16..1609 | 7955 | 99.9 | Plus |
| CG12268-RA | 1775 | CG12268-RA | 118..1711 | 16..1609 | 7955 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:24:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23944165..23944616 | 1194..743 | 2245 | 99.8 | Minus |
| 3R | 32079331 | 3R | 23943692..23944106 | 1609..1195 | 2075 | 100 | Minus |
| 3R | 32079331 | 3R | 23945017..23945412 | 633..238 | 1980 | 100 | Minus |
| 3R | 32079331 | 3R | 23946609..23946831 | 238..16 | 1115 | 100 | Minus |
| 3R | 32079331 | 3R | 23944685..23944794 | 743..634 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:24:49 has no hits.
BO11824.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:59:11 Download gff for
BO11824.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12268-RB | 1..1596 | 17..1613 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:10:58 Download gff for
BO11824.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12268-RB | 95..1699 | 16..1620 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:40:43 Download gff for
BO11824.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12268-RA | 119..1711 | 17..1611 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:36:29 Download gff for
BO11824.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12268-RB | 96..1688 | 17..1611 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:07:06 Download gff for
BO11824.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12268-RA | 119..1711 | 17..1611 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:07:06 Download gff for
BO11824.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23943690..23944106 | 1195..1611 | 99 | <- | Minus |
| 3R | 23944685..23944794 | 634..743 | 100 | <- | Minus |
| 3R | 23944165..23944615 | 744..1194 | 99 | <- | Minus |
| 3R | 23945017..23945411 | 239..633 | 100 | <- | Minus |
| 3R | 23946609..23946830 | 17..238 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:40:43 Download gff for
BO11824.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19769412..19769828 | 1195..1611 | 99 | <- | Minus |
| arm_3R | 19769887..19770337 | 744..1194 | 99 | <- | Minus |
| arm_3R | 19770407..19770516 | 634..743 | 100 | <- | Minus |
| arm_3R | 19770739..19771133 | 239..633 | 100 | <- | Minus |
| arm_3R | 19772331..19772552 | 17..238 | 100 | | Minus |
BO11824.pep Sequence
Translation from 16 to 1627
> BO11824.pep
MDILRSDADCGESDIAKFYANKTILITGATGFMGKVLVEKLLRSCADLNV
IYLLIRTKKGVDPSVRKEQYFKCVIFGKLLEKNPGIVDKVRVVKGDLLEP
DLGLSANDTNTLASNVEVVFHCAANVRFDQPLRPMVMMNVVGTLKVLRLA
EKMSQLQALVHVSTSYCQCNESVLEERAYPAPQNPFSIIEMVETMDDEAL
AEITPKLLNGLPNTYAYSKALSEDLICRYNNKLPIIITRPSIVTAAIHEP
LPGWIEGVNGPTGLMIGAARGVIRSMHCNPDYASTVIPVDKAINGMILCG
YQRGKASQEKGNKQTGVEFCNLCISSKALMSWGDSIETGRRFFYETPLSF
ALWYPGGSIKKNYYHHLFCVIFFHYLPAYFIDFWLLVFGQKPFLLNVQRK
VSMGLKLLQYYTTKRWEFRNERFQEMSSQLSLLDQDLFDTSVGQVNWETY
ISNYIVGMRTYILGESEDTLPQARKVLRRLYILDWVSKVLFFSLSFWFLW
THLDGFVERSDAFIRSSLSTIYHERNSTIHVASFLDH
BO11824.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:34:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12268-PC | 531 | CG12268-PC | 1..531 | 1..531 | 2785 | 100 | Plus |
| CG12268-PB | 531 | CG12268-PB | 1..531 | 1..531 | 2785 | 100 | Plus |
| CG12268-PA | 531 | CG12268-PA | 1..531 | 1..531 | 2785 | 100 | Plus |
| CG30427-PG | 506 | CG30427-PG | 6..487 | 13..497 | 1034 | 40.3 | Plus |
| CG30427-PC | 506 | CG30427-PC | 6..487 | 13..497 | 1034 | 40.3 | Plus |
