Clone BO11826 Report

Search the DGRC for BO11826

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:118
Well:26
Vector:pDNR-Dual
Associated Gene/TranscriptCG3408-RA
Protein status:BO11826.pep: validated full length
Sequenced Size:1027

Clone Sequence Records

BO11826.3prime Sequence

888 bp (776 high quality bases) assembled on 2006-04-19

> BO11826.3prime
ATGGTCTAGAAAGCTTGCGTGTTCCTCCGGTGGTGTTCGGAATTCCGAGA
TCCAGTCGGTAACACGCAGCCGAAAGATCTCCGTTTTGGTCAGGATCCAA
TCGCGATACTGGTGTGGTATATACTCCACCAGCTTGTCGGCGATGTCCGG
ATTCTTGAACATGATCATGTAAATGATTAACAAGTTGATGATAAAGAGAA
CCAGAAAGCTGACCAGCGACGATAGGGCAGCTCTCGACAGTAGATTCAAC
CAGGAATCGCCTTTCGAGTTCTTTTTCTTTTGATTGTTCTTTTGAGTTGA
TTTGGATCCCAGTGCGATTGCTCCTGATCCTCCTGATCCCACTGCATTTA
CTGGTTTGATTGTCAGCTCATTGTCTCCCCCACCGGCGAGTTTTTTAGCT
TTGGCTTTCTTATTATTCGGTTTCGTCGACTTCTTTCCACCAGCTGCGCC
GCCATTCGTTTGAACGGCGTTGGCACTGGAATCCCCGGCTCCGGCCATTT
TCTGGCTCTCTTGGGCGGCCAAACGTTCGCGTTCAATGAATTCCGGCTTG
TAGTTGGCGCAGATGCTGACTGTATTCTTGGCCGCCTGCTGGCAGTCCTT
TTGCGTGGAGCAGCAGCCCACAATCTTCTCCCAGGCGGGCGTCAGTGGAT
TCCCCTTCAGGTCTAAGTACCGCAAACGACGCAGCTGACCGAAGCTAATG
GGCAGGTGCTCCAAGCAATTGTTGTACAAGTCCAAGTGGCGCAACTGCTC
CAGCTGGCCAAAGTCCTCGGGCAGGAATTTTATTTGGTTCTTGCTTAGGT
CCAGGCGCACCAAGCGTGTGAGAATCGAAAGTTTTTTTCCCAGTTGACCA
GACGATTGCTGGAGAGATCCAAAACGGTGACGCCCTTG

BO11826.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:31:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG3408-PA 996 CG3408-RA 170..993 842..19 4070 99.7 Minus
CG3408-PA 996 CG3408-RA 128..183 883..828 230 96.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:56:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG3408-RB 1876 CG3408-RB 242..1112 888..19 4285 99.5 Minus
CG3408-RA 1888 CG3408-RA 254..1124 888..19 4285 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:55:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9507582..9508133 19..570 2760 100 Plus
3L 28110227 3L 9508218..9508486 569..837 1315 99.3 Plus
3L 28110227 3L 9508570..9508616 842..888 220 97.9 Plus
Blast to na_te.dros performed on 2015-02-10 18:55:59 has no hits.

BO11826.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:17:53 Download gff for BO11826.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3408-PA 123..996 16..888 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:46:06 Download gff for BO11826.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3408-PA 123..996 16..888 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 12:54:23 Download gff for BO11826.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3408-RA 254..1132 11..888 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:15:54 Download gff for BO11826.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3408-RA 254..1132 11..888 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:15:54 Download gff for BO11826.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 9507574..9508133 11..570 99 <- Plus
3L 9508220..9508486 571..836 99 <- Plus
3L 9508565..9508616 837..888 94   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 12:54:23 Download gff for BO11826.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9500674..9501233 11..570 99 <- Plus
arm_3L 9501320..9501586 571..836 99 <- Plus
arm_3L 9501665..9501716 837..888 94   Plus

BO11826.5prime Sequence

878 bp (815 high quality bases) assembled on 2006-04-19

> BO11826.5prime
GAAGTTATCAGTCGACATGCCGAAACCCGGTGACAAGGCGAAGGTGAAGG
TGAACGTCAAGGAGCGGGTGGTGGACGAAACCTGCGACTTGAGTCTCTCC
GAACTGAGCGAAATACCGGTGCGGGAGATCGCTTCGTTCAAGCGCGTCAC
CGTTTTGGATCTCTCCAGCAATCGTCTGGTCAACTTGGGAAAAAACTTTT
CGATTCTCACACGCTTGGTGCGCCTGGACCTAAGCAAGAACCAAATAAAA
TTCCTGCCCGAGGACTTTGGCCAGCTGGAGCAGTTGCGCCACTTGGACTT
GTACAACAATTGCTTGGAGCACCTGCCCATTAGCTTCGGTCAGCTGCGTC
GTTTGCGGTACTTAGACCTGAAGGGGAATCCACTGACGCCCGCCTGGGAG
AAGATTGTGGGCTGCTGCTCCACGCAAAAGGACTGCCAGCAGGCGGCCAA
GAATACAGTCAGCATCTGCGCCAACTACAAGCCGGAATTCATTGAACGCG
AACGTTTGGCCGCCCAAGAGAGCCAGAAAATGGCCGGAGCCGGGGATTCC
AGTGCCAACGCCGTTCAAACGAATGGCGGCGCAGCTGGTGGAAAGAAGTC
GACGAAACCGAATAATAAGAAAGCCAAAGCTAAAAAACTCGCCGGTGGGG
GAGACAATGAGCTGACAATCAAACCAGTAAATGCAGTGGGATCAGGAGGA
TCAGGAGCAATCGCACTGGGATCCAAATCAACTCAAAAGAACAATCAAAA
GAAAAAGAACTCGAAAGGCGATTCCTGGTTGAATCTACTGTCGAGAGCTG
CCCTATCGTCGCTGGTCAGCTTTCTGGGTCTCTTTATCATCAACTTGTTA
ATCATTTACATGATCATGTTCAAGATTC

BO11826.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:31:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG3408-PA 996 CG3408-RA 1..859 17..875 4270 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:21:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG3408-RA 1888 CG3408-RA 128..990 13..875 4285 99.8 Plus
CG3408-RB 1876 CG3408-RB 128..978 13..875 4095 98.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:21:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9507716..9508133 875..458 2075 99.8 Minus
3L 28110227 3L 9508218..9508486 459..191 1345 100 Minus
3L 28110227 3L 9509338..9509456 131..13 580 99.2 Minus
3L 28110227 3L 9508565..9508624 190..131 300 100 Minus
Blast to na_te.dros performed on 2015-02-12 13:21:12 has no hits.

BO11826.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:17:54 Download gff for BO11826.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3408-PA 1..862 17..878 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:46:07 Download gff for BO11826.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3408-PA 1..862 17..878 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:26:08 Download gff for BO11826.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3408-RA 119..993 2..878 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:02:38 Download gff for BO11826.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3408-RA 119..993 2..878 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 17:02:38 Download gff for BO11826.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9507713..9508133 458..878 99 <- Minus
3L 9508220..9508486 191..457 100 <- Minus
3L 9508565..9508624 131..190 100 <- Minus
3L 9509339..9509465 2..130 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:26:08 Download gff for BO11826.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9500813..9501233 458..878 99 <- Minus
arm_3L 9501320..9501586 191..457 100 <- Minus
arm_3L 9501665..9501724 131..190 100 <- Minus
arm_3L 9502439..9502565 2..130 96   Minus

BO11826.complete Sequence

1027 bp assembled on 2006-10-11

GenBank Submission: FJ632210

> BO11826.complete
GAAGTTATCAGTCGACATGCCGAAACCCGGTGACAAGGCGAAGGTGAAGG
TGAACGTCAAGGAGCGGGTGGTGGACGAAACCTGCGACTTGAGTCTCTCC
GAACTGAGCGAAATACCGGTGCGGGAGATCGCTTCGTTCAAGCGCGTCAC
CGTTTTGGATCTCTCCAGCAATCGTCTGGTCAACTTGGGAAAAAACTTTT
CGATTCTCACACGCTTGGTGCGCCTGGACCTAAGCAAGAACCAAATAAAA
TTCCTGCCCGAGGACTTTGGCCAGCTGGAGCAGTTGCGCCACTTGGACTT
GTACAACAATTGCTTGGAGCACCTGCCCATTAGCTTCGGTCAGCTGCGTC
GTTTGCGGTACTTAGACCTGAAGGGGAATCCACTGACGCCCGCCTGGGAG
AAGATTGTGGGCTGCTGCTCCACGCAAAAGGACTGCCAGCAGGCGGCCAA
GAATACAGTCAGCATCTGCGCCAACTACAAGCCGGAATTCATTGAACGCG
AACGTTTGGCCGCCCAAGAGAGCCAGAAAATGGCCGGAGCCGGGGATTCC
AGTGCCAACGCCGTTCAAACGAATGGCGGCGCAGCTGGTGGAAAGAAGTC
GACGAAACCGAATAATAAGAAAGCCAAAGCTAAAAAACTCGCCGGTGGGG
GAGACAATGAGCTGACAATCAAACCAGTAAATGCAGTGGGATCAGGAGGA
TCAGGAGCAATCGCACTGGGATCCAAATCAACTCAAAAGAACAATCAAAA
GAAAAAGAACTCGAAAGGCGATTCCTGGTTGAATCTACTGTCGAGAGCTG
CCCTATCGTCGCTGGTCAGCTTTCTGGTTCTCTTTATCATCAACTTGTTA
ATCATTTACATGATCATGTTCAAGAATCCGGACATCGCCGACAAGCTGGT
GGAGTATATACCACACCAGTATCGCGATTGGATCCTGACCAAAACGGAGA
TCTTTCGGCTGCGTGTTACCGACTGGATCTCGGAATTCCGAACACCACCG
GAGGAACACGCAAGCTTTCTAGACCAT

BO11826.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:44:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG3408-RA 996 CG3408-PA 1..993 17..1009 4965 100 Plus
CG3408-RB 984 CG3408-PB 1..981 17..1009 4750 98.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:44:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG3408-RA 1888 CG3408-RA 128..1124 13..1009 4970 99.9 Plus
CG3408-RB 1876 CG3408-RB 128..1112 13..1009 4755 98.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:44:54
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9507582..9508133 1009..458 2760 100 Minus
3L 28110227 3L 9508218..9508486 459..191 1345 100 Minus
3L 28110227 3L 9509338..9509456 131..13 580 99.2 Minus
3L 28110227 3L 9508565..9508624 190..131 300 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:44:55 has no hits.

BO11826.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:49:30 Download gff for BO11826.complete
Subject Subject Range Query Range Percent Splice Strand
CG3408-RA 1..996 17..1012 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:04:30 Download gff for BO11826.complete
Subject Subject Range Query Range Percent Splice Strand
CG3408-RA 116..1129 2..1017 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:13:33 Download gff for BO11826.complete
Subject Subject Range Query Range Percent Splice Strand
CG3408-RA 132..1124 17..1011 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:49:30 Download gff for BO11826.complete
Subject Subject Range Query Range Percent Splice Strand
CG3408-RA 116..1129 2..1017 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:27:26 Download gff for BO11826.complete
Subject Subject Range Query Range Percent Splice Strand
CG3408-RA 132..1124 17..1011 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:27:26 Download gff for BO11826.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9507578..9508133 458..1011 99 <- Minus
3L 9508220..9508486 191..457 100 <- Minus
3L 9508565..9508624 131..190 100 <- Minus
3L 9509339..9509452 17..130 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:13:33 Download gff for BO11826.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9500678..9501233 458..1011 99 <- Minus
arm_3L 9501320..9501586 191..457 100 <- Minus
arm_3L 9501665..9501724 131..190 100 <- Minus
arm_3L 9502439..9502552 17..130 100   Minus

BO11826.pep Sequence

Translation from 16 to 1027

> BO11826.pep
MPKPGDKAKVKVNVKERVVDETCDLSLSELSEIPVREIASFKRVTVLDLS
SNRLVNLGKNFSILTRLVRLDLSKNQIKFLPEDFGQLEQLRHLDLYNNCL
EHLPISFGQLRRLRYLDLKGNPLTPAWEKIVGCCSTQKDCQQAAKNTVSI
CANYKPEFIERERLAAQESQKMAGAGDSSANAVQTNGGAAGGKKSTKPNN
KKAKAKKLAGGGDNELTIKPVNAVGSGGSGAIALGSKSTQKNNQKKKNSK
GDSWLNLLSRAALSSLVSFLVLFIINLLIIYMIMFKNPDIADKLVEYIPH
QYRDWILTKTEIFRLRVTDWISEFRTPPEEHASFLDH

BO11826.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:31:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG3408-PA 331 CG3408-PA 1..331 1..331 1698 100 Plus
CG3408-PB 327 CG3408-PB 1..327 1..331 1665 98.8 Plus
CG3494-PB 240 CG3494-PB 42..141 25..121 163 39 Plus
CG3494-PA 240 CG3494-PA 42..141 25..121 163 39 Plus
twin-PB 545 CG31137-PB 51..133 41..123 163 45.8 Plus