Clone Sequence Records
BO11826.3prime Sequence
888 bp (776 high quality bases) assembled on 2006-04-19
> BO11826.3prime
ATGGTCTAGAAAGCTTGCGTGTTCCTCCGGTGGTGTTCGGAATTCCGAGA
TCCAGTCGGTAACACGCAGCCGAAAGATCTCCGTTTTGGTCAGGATCCAA
TCGCGATACTGGTGTGGTATATACTCCACCAGCTTGTCGGCGATGTCCGG
ATTCTTGAACATGATCATGTAAATGATTAACAAGTTGATGATAAAGAGAA
CCAGAAAGCTGACCAGCGACGATAGGGCAGCTCTCGACAGTAGATTCAAC
CAGGAATCGCCTTTCGAGTTCTTTTTCTTTTGATTGTTCTTTTGAGTTGA
TTTGGATCCCAGTGCGATTGCTCCTGATCCTCCTGATCCCACTGCATTTA
CTGGTTTGATTGTCAGCTCATTGTCTCCCCCACCGGCGAGTTTTTTAGCT
TTGGCTTTCTTATTATTCGGTTTCGTCGACTTCTTTCCACCAGCTGCGCC
GCCATTCGTTTGAACGGCGTTGGCACTGGAATCCCCGGCTCCGGCCATTT
TCTGGCTCTCTTGGGCGGCCAAACGTTCGCGTTCAATGAATTCCGGCTTG
TAGTTGGCGCAGATGCTGACTGTATTCTTGGCCGCCTGCTGGCAGTCCTT
TTGCGTGGAGCAGCAGCCCACAATCTTCTCCCAGGCGGGCGTCAGTGGAT
TCCCCTTCAGGTCTAAGTACCGCAAACGACGCAGCTGACCGAAGCTAATG
GGCAGGTGCTCCAAGCAATTGTTGTACAAGTCCAAGTGGCGCAACTGCTC
CAGCTGGCCAAAGTCCTCGGGCAGGAATTTTATTTGGTTCTTGCTTAGGT
CCAGGCGCACCAAGCGTGTGAGAATCGAAAGTTTTTTTCCCAGTTGACCA
GACGATTGCTGGAGAGATCCAAAACGGTGACGCCCTTG
BO11826.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:31:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3408-PA | 996 | CG3408-RA | 170..993 | 842..19 | 4070 | 99.7 | Minus |
CG3408-PA | 996 | CG3408-RA | 128..183 | 883..828 | 230 | 96.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:56:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3408-RB | 1876 | CG3408-RB | 242..1112 | 888..19 | 4285 | 99.5 | Minus |
CG3408-RA | 1888 | CG3408-RA | 254..1124 | 888..19 | 4285 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:55:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9507582..9508133 | 19..570 | 2760 | 100 | Plus |
3L | 28110227 | 3L | 9508218..9508486 | 569..837 | 1315 | 99.3 | Plus |
3L | 28110227 | 3L | 9508570..9508616 | 842..888 | 220 | 97.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:55:59 has no hits.
BO11826.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:17:53 Download gff for
BO11826.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3408-PA | 123..996 | 16..888 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:46:06 Download gff for
BO11826.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3408-PA | 123..996 | 16..888 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 12:54:23 Download gff for
BO11826.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3408-RA | 254..1132 | 11..888 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:15:54 Download gff for
BO11826.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3408-RA | 254..1132 | 11..888 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:15:54 Download gff for
BO11826.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9507574..9508133 | 11..570 | 99 | <- | Plus |
3L | 9508220..9508486 | 571..836 | 99 | <- | Plus |
3L | 9508565..9508616 | 837..888 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 12:54:23 Download gff for
BO11826.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9500674..9501233 | 11..570 | 99 | <- | Plus |
arm_3L | 9501320..9501586 | 571..836 | 99 | <- | Plus |
arm_3L | 9501665..9501716 | 837..888 | 94 | | Plus |
BO11826.5prime Sequence
878 bp (815 high quality bases) assembled on 2006-04-19
> BO11826.5prime
GAAGTTATCAGTCGACATGCCGAAACCCGGTGACAAGGCGAAGGTGAAGG
TGAACGTCAAGGAGCGGGTGGTGGACGAAACCTGCGACTTGAGTCTCTCC
GAACTGAGCGAAATACCGGTGCGGGAGATCGCTTCGTTCAAGCGCGTCAC
CGTTTTGGATCTCTCCAGCAATCGTCTGGTCAACTTGGGAAAAAACTTTT
CGATTCTCACACGCTTGGTGCGCCTGGACCTAAGCAAGAACCAAATAAAA
TTCCTGCCCGAGGACTTTGGCCAGCTGGAGCAGTTGCGCCACTTGGACTT
GTACAACAATTGCTTGGAGCACCTGCCCATTAGCTTCGGTCAGCTGCGTC
GTTTGCGGTACTTAGACCTGAAGGGGAATCCACTGACGCCCGCCTGGGAG
AAGATTGTGGGCTGCTGCTCCACGCAAAAGGACTGCCAGCAGGCGGCCAA
GAATACAGTCAGCATCTGCGCCAACTACAAGCCGGAATTCATTGAACGCG
AACGTTTGGCCGCCCAAGAGAGCCAGAAAATGGCCGGAGCCGGGGATTCC
AGTGCCAACGCCGTTCAAACGAATGGCGGCGCAGCTGGTGGAAAGAAGTC
GACGAAACCGAATAATAAGAAAGCCAAAGCTAAAAAACTCGCCGGTGGGG
GAGACAATGAGCTGACAATCAAACCAGTAAATGCAGTGGGATCAGGAGGA
TCAGGAGCAATCGCACTGGGATCCAAATCAACTCAAAAGAACAATCAAAA
GAAAAAGAACTCGAAAGGCGATTCCTGGTTGAATCTACTGTCGAGAGCTG
CCCTATCGTCGCTGGTCAGCTTTCTGGGTCTCTTTATCATCAACTTGTTA
ATCATTTACATGATCATGTTCAAGATTC
BO11826.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:31:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3408-PA | 996 | CG3408-RA | 1..859 | 17..875 | 4270 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:21:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3408-RA | 1888 | CG3408-RA | 128..990 | 13..875 | 4285 | 99.8 | Plus |
CG3408-RB | 1876 | CG3408-RB | 128..978 | 13..875 | 4095 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:21:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9507716..9508133 | 875..458 | 2075 | 99.8 | Minus |
3L | 28110227 | 3L | 9508218..9508486 | 459..191 | 1345 | 100 | Minus |
3L | 28110227 | 3L | 9509338..9509456 | 131..13 | 580 | 99.2 | Minus |
3L | 28110227 | 3L | 9508565..9508624 | 190..131 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 13:21:12 has no hits.
BO11826.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:17:54 Download gff for
BO11826.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3408-PA | 1..862 | 17..878 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:46:07 Download gff for
BO11826.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3408-PA | 1..862 | 17..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:26:08 Download gff for
BO11826.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3408-RA | 119..993 | 2..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:02:38 Download gff for
BO11826.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3408-RA | 119..993 | 2..878 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 17:02:38 Download gff for
BO11826.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9507713..9508133 | 458..878 | 99 | <- | Minus |
3L | 9508220..9508486 | 191..457 | 100 | <- | Minus |
3L | 9508565..9508624 | 131..190 | 100 | <- | Minus |
3L | 9509339..9509465 | 2..130 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:26:08 Download gff for
BO11826.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9500813..9501233 | 458..878 | 99 | <- | Minus |
arm_3L | 9501320..9501586 | 191..457 | 100 | <- | Minus |
arm_3L | 9501665..9501724 | 131..190 | 100 | <- | Minus |
arm_3L | 9502439..9502565 | 2..130 | 96 | | Minus |
BO11826.complete Sequence
1027 bp assembled on 2006-10-11
GenBank Submission: FJ632210
> BO11826.complete
GAAGTTATCAGTCGACATGCCGAAACCCGGTGACAAGGCGAAGGTGAAGG
TGAACGTCAAGGAGCGGGTGGTGGACGAAACCTGCGACTTGAGTCTCTCC
GAACTGAGCGAAATACCGGTGCGGGAGATCGCTTCGTTCAAGCGCGTCAC
CGTTTTGGATCTCTCCAGCAATCGTCTGGTCAACTTGGGAAAAAACTTTT
CGATTCTCACACGCTTGGTGCGCCTGGACCTAAGCAAGAACCAAATAAAA
TTCCTGCCCGAGGACTTTGGCCAGCTGGAGCAGTTGCGCCACTTGGACTT
GTACAACAATTGCTTGGAGCACCTGCCCATTAGCTTCGGTCAGCTGCGTC
GTTTGCGGTACTTAGACCTGAAGGGGAATCCACTGACGCCCGCCTGGGAG
AAGATTGTGGGCTGCTGCTCCACGCAAAAGGACTGCCAGCAGGCGGCCAA
GAATACAGTCAGCATCTGCGCCAACTACAAGCCGGAATTCATTGAACGCG
AACGTTTGGCCGCCCAAGAGAGCCAGAAAATGGCCGGAGCCGGGGATTCC
AGTGCCAACGCCGTTCAAACGAATGGCGGCGCAGCTGGTGGAAAGAAGTC
GACGAAACCGAATAATAAGAAAGCCAAAGCTAAAAAACTCGCCGGTGGGG
GAGACAATGAGCTGACAATCAAACCAGTAAATGCAGTGGGATCAGGAGGA
TCAGGAGCAATCGCACTGGGATCCAAATCAACTCAAAAGAACAATCAAAA
GAAAAAGAACTCGAAAGGCGATTCCTGGTTGAATCTACTGTCGAGAGCTG
CCCTATCGTCGCTGGTCAGCTTTCTGGTTCTCTTTATCATCAACTTGTTA
ATCATTTACATGATCATGTTCAAGAATCCGGACATCGCCGACAAGCTGGT
GGAGTATATACCACACCAGTATCGCGATTGGATCCTGACCAAAACGGAGA
TCTTTCGGCTGCGTGTTACCGACTGGATCTCGGAATTCCGAACACCACCG
GAGGAACACGCAAGCTTTCTAGACCAT
BO11826.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:44:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3408-RA | 996 | CG3408-PA | 1..993 | 17..1009 | 4965 | 100 | Plus |
CG3408-RB | 984 | CG3408-PB | 1..981 | 17..1009 | 4750 | 98.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:44:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3408-RA | 1888 | CG3408-RA | 128..1124 | 13..1009 | 4970 | 99.9 | Plus |
CG3408-RB | 1876 | CG3408-RB | 128..1112 | 13..1009 | 4755 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:44:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9507582..9508133 | 1009..458 | 2760 | 100 | Minus |
3L | 28110227 | 3L | 9508218..9508486 | 459..191 | 1345 | 100 | Minus |
3L | 28110227 | 3L | 9509338..9509456 | 131..13 | 580 | 99.2 | Minus |
3L | 28110227 | 3L | 9508565..9508624 | 190..131 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:44:55 has no hits.
BO11826.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:49:30 Download gff for
BO11826.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3408-RA | 1..996 | 17..1012 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:04:30 Download gff for
BO11826.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3408-RA | 116..1129 | 2..1017 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:13:33 Download gff for
BO11826.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3408-RA | 132..1124 | 17..1011 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:49:30 Download gff for
BO11826.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3408-RA | 116..1129 | 2..1017 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:27:26 Download gff for
BO11826.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3408-RA | 132..1124 | 17..1011 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:27:26 Download gff for
BO11826.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9507578..9508133 | 458..1011 | 99 | <- | Minus |
3L | 9508220..9508486 | 191..457 | 100 | <- | Minus |
3L | 9508565..9508624 | 131..190 | 100 | <- | Minus |
3L | 9509339..9509452 | 17..130 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:13:33 Download gff for
BO11826.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9500678..9501233 | 458..1011 | 99 | <- | Minus |
arm_3L | 9501320..9501586 | 191..457 | 100 | <- | Minus |
arm_3L | 9501665..9501724 | 131..190 | 100 | <- | Minus |
arm_3L | 9502439..9502552 | 17..130 | 100 | | Minus |
BO11826.pep Sequence
Translation from 16 to 1027
> BO11826.pep
MPKPGDKAKVKVNVKERVVDETCDLSLSELSEIPVREIASFKRVTVLDLS
SNRLVNLGKNFSILTRLVRLDLSKNQIKFLPEDFGQLEQLRHLDLYNNCL
EHLPISFGQLRRLRYLDLKGNPLTPAWEKIVGCCSTQKDCQQAAKNTVSI
CANYKPEFIERERLAAQESQKMAGAGDSSANAVQTNGGAAGGKKSTKPNN
KKAKAKKLAGGGDNELTIKPVNAVGSGGSGAIALGSKSTQKNNQKKKNSK
GDSWLNLLSRAALSSLVSFLVLFIINLLIIYMIMFKNPDIADKLVEYIPH
QYRDWILTKTEIFRLRVTDWISEFRTPPEEHASFLDH
BO11826.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:31:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3408-PA | 331 | CG3408-PA | 1..331 | 1..331 | 1698 | 100 | Plus |
CG3408-PB | 327 | CG3408-PB | 1..327 | 1..331 | 1665 | 98.8 | Plus |
CG3494-PB | 240 | CG3494-PB | 42..141 | 25..121 | 163 | 39 | Plus |
CG3494-PA | 240 | CG3494-PA | 42..141 | 25..121 | 163 | 39 | Plus |
twin-PB | 545 | CG31137-PB | 51..133 | 41..123 | 163 | 45.8 | Plus |